Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.87512 * 2 1 4 4 C 1.54323 * 110.01199 * 121.10511 * 2 1 3 5 5 H 1.08996 * 110.71396 * 215.65844 * 4 2 1 6 6 N 1.46898 * 110.72020 * 338.75321 * 4 2 1 7 7 C 1.46899 * 111.00093 * 198.61652 * 6 4 2 8 8 C 1.50697 * 109.47341 * 180.02562 * 7 6 4 9 9 N 1.31077 * 126.65965 * 269.68270 * 8 7 6 10 10 N 1.28844 * 107.99074 * 179.89362 * 9 8 7 11 11 N 1.28738 * 109.39487 * 0.37804 * 10 9 8 12 12 N 1.29020 * 108.80985 * 359.76597 * 11 10 9 13 13 C 1.46506 * 126.43354 * 179.97438 * 12 11 10 14 14 C 1.55271 * 103.00799 * 97.37446 * 4 2 1 15 15 C 1.54909 * 101.53165 * 35.35929 * 14 4 2 16 16 N 1.47028 * 109.87851 * 238.98702 * 2 1 3 17 17 C 1.34774 * 125.64620 * 59.35008 * 16 2 1 18 18 O 1.21281 * 120.00212 * 359.97438 * 17 16 2 19 19 C 1.50696 * 119.99880 * 179.97438 * 17 16 2 20 20 S 1.80998 * 109.47464 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00494 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99573 * 0.02562 * 21 20 19 23 23 C 1.38793 * 120.00271 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99987 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00005 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47207 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47121 * 120.00314 * 25 23 21 28 28 H 1.48499 * 109.47115 * 239.99891 * 25 23 21 29 29 H 1.08998 * 109.46748 * 187.10579 * 1 2 3 30 30 H 1.08998 * 109.46867 * 307.10022 * 1 2 3 31 31 H 1.08992 * 109.47322 * 67.09957 * 1 2 3 32 32 H 1.00904 * 110.99879 * 322.56448 * 6 4 2 33 33 H 1.09002 * 109.46906 * 299.99531 * 7 6 4 34 34 H 1.08995 * 109.47559 * 59.99250 * 7 6 4 35 35 H 1.08999 * 109.47033 * 270.01980 * 13 12 11 36 36 H 1.08998 * 109.47160 * 30.02719 * 13 12 11 37 37 H 1.09001 * 109.47006 * 150.02573 * 13 12 11 38 38 H 1.09008 * 110.95747 * 277.33416 * 14 4 2 39 39 H 1.09006 * 111.10323 * 153.44960 * 14 4 2 40 40 H 1.08997 * 110.36873 * 204.23252 * 15 14 4 41 41 H 1.08999 * 110.36571 * 82.01982 * 15 14 4 42 42 H 1.09006 * 109.47426 * 299.99611 * 19 17 16 43 43 H 1.09004 * 109.47504 * 59.99799 * 19 17 16 44 44 H 0.97009 * 120.00268 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0582 -0.7491 1.2416 5 1 2.9685 -0.2809 1.6160 6 7 1.0328 -0.8015 2.2922 7 6 1.6331 -1.0998 3.5993 8 6 0.5531 -1.1459 4.6493 9 7 0.1237 -0.1423 5.3749 10 7 -0.8042 -0.5823 6.1531 11 7 -0.9723 -1.8421 5.9483 12 7 -0.1537 -2.2268 5.0282 13 6 -0.0187 -3.5852 4.4963 14 6 2.3603 -2.1691 0.6908 15 6 2.8599 -1.8465 -0.7396 16 7 2.0300 -0.7124 -1.1850 17 6 1.7720 -0.3833 -2.4662 18 8 1.0719 0.5748 -2.7171 19 6 2.3535 -1.2056 -3.5872 20 16 1.8284 -0.5166 -5.1763 21 6 2.6284 -1.6376 -6.2754 22 1 3.2237 -2.4479 -5.8812 23 6 2.4927 -1.4799 -7.6477 24 7 1.7668 -0.4925 -8.1281 25 14 3.3403 -2.6688 -8.8128 26 1 4.0893 -3.6823 -8.0273 27 1 2.3223 -3.3482 -9.6538 28 1 4.2828 -1.9213 -9.6836 29 1 -0.3633 -1.0198 0.1271 30 1 -0.3633 0.6199 0.8196 31 1 -0.3633 0.3999 -0.9466 32 1 0.5042 0.0574 2.3246 33 1 2.1381 -2.0648 3.5554 34 1 2.3547 -0.3234 3.8535 35 1 0.7209 -4.1324 5.0809 36 1 -0.9796 -4.0961 4.5562 37 1 0.3034 -3.5377 3.4560 38 1 1.4555 -2.7763 0.6609 39 1 3.1388 -2.6594 1.2753 40 1 2.7129 -2.7047 -1.3953 41 1 3.9118 -1.5618 -0.7188 42 1 3.4416 -1.1874 -3.5247 43 1 2.0020 -2.2341 -3.5036 44 1 1.6716 -0.3825 -9.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178148195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = 98.159757 kcal Electronic energy + Delta-G solvation = -26753.889875 eV Core-core repulsion = 22870.856327 eV Total energy + Delta-G solvation = -3883.033548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.57895 -40.33688 -38.02951 -36.22790 -35.67490 -33.13041 -32.46180 -31.56544 -30.88964 -29.12182 -28.50929 -26.73405 -25.53434 -25.20198 -23.84032 -23.15088 -22.30504 -20.50712 -19.14456 -17.98708 -17.78373 -17.71709 -16.84324 -16.44887 -16.44029 -15.51559 -15.26753 -14.97267 -14.83455 -14.47168 -14.25531 -14.10423 -13.92390 -13.71271 -13.35674 -13.07148 -12.89735 -12.65450 -12.59047 -12.50253 -12.44902 -12.00916 -11.81291 -11.68862 -11.53985 -11.32415 -11.24713 -11.09988 -11.05044 -10.94066 -10.78768 -10.55809 -9.83959 -9.38592 -9.20926 -9.10579 -8.58773 -8.26262 -6.53622 -6.24884 -3.95678 0.75784 1.54928 1.79631 2.77856 3.01331 3.18833 3.20316 3.27191 3.30547 3.55649 3.68287 3.74695 4.02283 4.17200 4.20450 4.27204 4.34673 4.61441 4.66349 4.73797 4.82268 4.90528 4.96944 4.99507 5.10342 5.10715 5.26119 5.28487 5.29887 5.37081 5.45208 5.59061 5.60832 5.66450 5.74941 5.86506 5.98140 6.08807 6.24743 6.28647 6.49872 6.60820 7.56382 7.61137 8.19081 8.32046 8.51773 9.20501 10.82549 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029619 B = 0.001937 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.114184 B =14454.327888 C =14830.636348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 H 0.074 0.926 4 C 0.078 3.922 5 H 0.068 0.932 6 N -0.674 5.674 7 C 0.139 3.861 8 C 0.187 3.813 9 N -0.300 5.300 10 N -0.076 5.076 11 N -0.095 5.095 12 N -0.296 5.296 13 C 0.077 3.923 14 C -0.122 4.122 15 C 0.100 3.900 16 N -0.621 5.621 17 C 0.550 3.450 18 O -0.511 6.511 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.357 0.643 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 -8.334 25.985 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.032 4.032 5 H 0.086 0.914 6 N -0.309 5.309 7 C 0.007 3.993 8 C -0.091 4.091 9 N -0.150 5.150 10 N -0.069 5.069 11 N -0.081 5.081 12 N -0.098 5.098 13 C -0.065 4.065 14 C -0.160 4.160 15 C -0.024 4.024 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.385 6.385 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.179 0.821 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.630 -6.845 26.228 27.114 hybrid contribution 2.274 -1.707 -0.867 2.972 sum 2.904 -8.552 25.361 26.921 Atomic orbital electron populations 1.22016 0.94046 1.02579 1.02927 1.21453 0.95565 0.95615 0.83867 0.90789 1.22608 0.93057 0.96991 0.90551 0.91417 1.60678 1.25236 1.43007 1.02027 1.20381 0.90048 1.04163 0.84737 1.25884 0.99270 0.83399 1.00583 1.75035 1.08924 1.24611 1.06417 1.78652 1.10881 1.00277 1.17116 1.78914 1.12841 1.09879 1.06426 1.48369 1.23989 1.12161 1.25294 1.22482 1.06149 0.76407 1.01421 1.22890 1.02166 0.96046 0.94946 1.22280 0.94965 0.89955 0.95193 1.48496 1.51867 1.30860 1.04651 1.20010 0.80082 0.84727 0.81291 1.90701 1.37105 1.28164 1.82548 1.23510 1.03728 1.02519 0.99953 1.85424 1.66810 1.40547 0.90602 1.22888 1.36260 1.16069 0.93077 0.90892 1.24997 0.95258 0.95982 0.97388 1.70027 1.37222 1.29321 1.13640 0.86115 0.79075 0.80175 0.80113 1.19623 1.20560 1.20555 0.91740 0.92371 0.90573 0.82053 0.88011 0.90330 0.88486 0.87412 0.86826 0.89436 0.90102 0.90034 0.91316 0.89346 0.89345 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.30 37.16 0.31 -1.46 16 2 C 0.14 1.45 3.40 -66.95 -0.23 1.22 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.08 0.48 3.09 -65.82 -0.20 0.28 16 5 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 6 N -0.67 -3.69 5.51 -106.00 -0.58 -4.27 16 7 C 0.14 0.58 5.68 -4.98 -0.03 0.55 16 8 C 0.19 1.39 7.65 -155.43 -1.19 0.20 16 9 N -0.30 -3.29 12.36 32.70 0.40 -2.89 16 10 N -0.08 -0.93 13.43 60.35 0.81 -0.12 16 11 N -0.09 -0.98 13.29 60.35 0.80 -0.18 16 12 N -0.30 -2.03 3.75 -65.02 -0.24 -2.28 16 13 C 0.08 0.14 11.09 59.85 0.66 0.81 16 14 C -0.12 -0.66 6.67 -24.52 -0.16 -0.83 16 15 C 0.10 0.86 6.69 -2.53 -0.02 0.85 16 16 N -0.62 -7.97 3.08 -163.02 -0.50 -8.47 16 17 C 0.55 10.01 7.64 -10.99 -0.08 9.92 16 18 O -0.51 -11.29 14.66 5.56 0.08 -11.21 16 19 C -0.15 -2.87 5.16 36.00 0.19 -2.69 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 21 C -0.53 -14.95 9.50 30.94 0.29 -14.65 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 25 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 30 H 0.06 0.54 6.72 -51.93 -0.35 0.20 16 31 H 0.08 1.15 6.52 -51.93 -0.34 0.81 16 32 H 0.36 2.39 6.71 -39.29 -0.26 2.12 16 33 H 0.10 0.17 7.75 -51.93 -0.40 -0.24 16 34 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.11 0.06 7.75 -51.93 -0.40 -0.34 16 38 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 43 H 0.09 1.60 7.85 -51.91 -0.41 1.19 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -37.35 379.05 -6.88 -44.23 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.30 Total: -3.75 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -0.56 Total: -3.85 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 1.42 Total: -43.32 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.35 -6.88 -44.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178148195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.387 kcal (2) G-P(sol) polarization free energy of solvation -37.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds