Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.38783 * 2 1 4 4 C 1.54391 * 110.34226 * 237.76994 * 2 1 3 5 5 N 1.48144 * 104.61787 * 217.25754 * 4 2 1 6 6 C 1.34773 * 127.84291 * 219.58458 * 5 4 2 7 7 O 1.21701 * 120.00172 * 191.25268 * 6 5 4 8 8 C 1.46657 * 119.99853 * 11.25266 * 6 5 4 9 9 C 1.36676 * 126.84378 * 15.83154 * 8 6 5 10 10 N 1.33299 * 107.83300 * 180.02562 * 9 8 6 11 11 C 1.31022 * 109.70457 * 359.97438 * 10 9 8 12 12 Cl 1.73605 * 125.43523 * 180.02562 * 11 10 9 13 13 N 1.34597 * 109.12775 * 0.02562 * 11 10 9 14 14 C 1.46509 * 126.48871 * 180.26304 * 13 11 10 15 15 C 1.48155 * 104.31958 * 39.85046 * 5 4 2 16 16 C 1.54282 * 110.34388 * 122.23288 * 2 1 3 17 17 C 1.53002 * 110.34157 * 359.89132 * 16 2 1 18 18 C 1.53000 * 110.34220 * 237.74345 * 16 2 1 19 19 N 1.46501 * 109.47062 * 179.97438 * 18 16 2 20 20 C 1.36943 * 119.99800 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99860 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99700 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99957 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99931 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47212 * 90.00330 * 24 22 20 26 26 H 1.48499 * 109.47240 * 210.00460 * 24 22 20 27 27 H 1.48496 * 109.47023 * 330.00117 * 24 22 20 28 28 H 1.09003 * 109.47235 * 180.77652 * 1 2 3 29 29 H 1.08997 * 109.47255 * 300.77837 * 1 2 3 30 30 H 1.09004 * 109.46951 * 60.77632 * 1 2 3 31 31 H 1.09004 * 110.40670 * 98.48026 * 4 2 1 32 32 H 1.08997 * 110.50540 * 336.09767 * 4 2 1 33 33 H 1.08007 * 126.08191 * 0.04322 * 9 8 6 34 34 H 1.09004 * 109.46611 * 262.54346 * 14 13 11 35 35 H 1.08997 * 109.47307 * 22.53773 * 14 13 11 36 36 H 1.08997 * 109.47122 * 142.54748 * 14 13 11 37 37 H 1.08991 * 110.40857 * 78.93839 * 15 5 4 38 38 H 1.09002 * 110.40484 * 201.36741 * 15 5 4 39 39 H 1.09004 * 109.46538 * 60.00259 * 17 16 2 40 40 H 1.09000 * 109.46989 * 179.97438 * 17 16 2 41 41 H 1.08997 * 109.47204 * 300.00317 * 17 16 2 42 42 H 1.09001 * 109.47020 * 299.99797 * 18 16 2 43 43 H 1.08998 * 109.47322 * 59.99661 * 18 16 2 44 44 H 0.96995 * 120.00353 * 0.02562 * 19 18 16 45 45 H 0.96998 * 119.99867 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 3.2664 -1.4816 -0.7228 6 6 4.4424 -1.6663 -1.3546 7 8 5.2622 -2.4424 -0.9000 8 6 4.7342 -0.9320 -2.5901 9 6 4.0786 0.1702 -3.0627 10 7 4.6540 0.5263 -4.2112 11 6 5.6380 -0.2944 -4.4854 12 17 6.6624 -0.2058 -5.8842 13 7 5.7277 -1.2170 -3.5095 14 6 6.6982 -2.3118 -3.4322 15 6 2.8779 -1.9478 0.6288 16 6 2.0663 -0.7716 1.2236 17 6 0.9061 -1.3012 2.0688 18 6 2.9691 0.1306 2.0674 19 7 3.4667 -0.6199 3.2230 20 6 4.2996 -0.0142 4.1257 21 1 4.5891 1.0167 3.9860 22 6 4.7706 -0.7252 5.2209 23 7 4.4172 -1.9816 5.3914 24 14 5.9061 0.1011 6.4527 25 1 5.0967 0.7335 7.5252 26 1 6.8118 -0.9134 7.0491 27 1 6.7124 1.1400 5.7632 28 1 -0.3634 -1.0276 0.0139 29 1 -0.3633 0.5259 0.8829 30 1 -0.3633 0.5017 -0.8969 31 1 2.3401 -0.0794 -2.0206 32 1 1.3243 -1.4859 -1.5813 33 1 3.2431 0.6649 -2.5896 34 1 6.2436 -3.2275 -3.8103 35 1 7.5729 -2.0651 -4.0339 36 1 6.9999 -2.4574 -2.3949 37 1 2.2595 -2.8426 0.5590 38 1 3.7640 -2.1433 1.2327 39 1 0.2941 -1.9721 1.4658 40 1 1.3006 -1.8436 2.9281 41 1 0.2972 -0.4658 2.4142 42 1 3.8111 0.4690 1.4635 43 1 2.3998 0.9935 2.4128 44 1 3.2070 -1.5460 3.3483 45 1 4.7467 -2.4785 6.1565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182102426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = 58.368101 kcal Electronic energy + Delta-G solvation = -28218.930537 eV Core-core repulsion = 24299.835036 eV Total energy + Delta-G solvation = -3919.095501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.57987 -40.18042 -38.16858 -37.35589 -35.03325 -34.38155 -33.32069 -31.59484 -30.49003 -29.44987 -27.52557 -27.10145 -25.77784 -25.68917 -23.60251 -22.66538 -21.85864 -21.04776 -19.65300 -18.40730 -17.75238 -17.30199 -16.72098 -16.44839 -15.92528 -15.54382 -15.11810 -14.93168 -14.59105 -14.27033 -13.92458 -13.66228 -13.58329 -13.47321 -13.13618 -13.01848 -12.82908 -12.64900 -12.16048 -12.06216 -11.92543 -11.79413 -11.56614 -11.40742 -11.21835 -10.96664 -10.81633 -10.68899 -10.46367 -10.33134 -10.19495 -10.13991 -9.97189 -9.90704 -9.58802 -8.93909 -8.85514 -8.59370 -6.89554 -5.74530 -3.02560 0.85173 0.95609 2.28835 2.36820 3.02434 3.12675 3.45357 3.50789 3.52378 4.17250 4.31734 4.46284 4.56709 4.61054 4.77351 4.87845 4.89531 4.94294 5.23929 5.28477 5.34620 5.43840 5.49321 5.54163 5.61616 5.64732 5.71990 5.84218 5.92031 6.02369 6.05237 6.09971 6.15329 6.20931 6.26308 6.36139 6.42079 6.51126 6.69412 6.78435 6.86894 7.32475 7.50737 7.72585 8.05090 8.44530 9.55952 10.12761 10.47274 11.48382 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.003179 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.806563 B = 8804.563348 C =10202.797846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.084 3.916 5 N -0.606 5.606 6 C 0.614 3.386 7 O -0.533 6.533 8 C -0.054 4.054 9 C 0.034 3.966 10 N -0.467 5.467 11 C 0.256 3.744 12 Cl 0.040 6.960 13 N -0.413 5.413 14 C 0.060 3.940 15 C 0.120 3.880 16 C -0.075 4.075 17 C -0.134 4.134 18 C 0.168 3.832 19 N -0.729 5.729 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.202 0.798 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 0.839 -22.072 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.038 4.038 5 N -0.339 5.339 6 C 0.401 3.599 7 O -0.410 6.410 8 C -0.171 4.171 9 C -0.119 4.119 10 N -0.189 5.189 11 C -0.031 4.031 12 Cl 0.067 6.933 13 N -0.096 5.096 14 C -0.081 4.081 15 C -0.002 4.002 16 C -0.077 4.077 17 C -0.192 4.192 18 C 0.041 3.959 19 N -0.374 5.374 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.218 0.782 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.040 0.960 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.922 1.012 -22.410 22.773 hybrid contribution 1.053 -0.495 1.042 1.562 sum -2.869 0.517 -21.368 21.566 Atomic orbital electron populations 1.21894 0.93975 1.02245 1.01839 1.22159 0.96237 0.99817 0.93635 0.89681 1.23109 0.86780 0.96251 0.97668 1.48422 1.11560 1.55507 1.18390 1.16079 0.80943 0.81183 0.81649 1.90850 1.46646 1.36476 1.67031 1.20830 0.96819 1.03315 0.96141 1.23246 1.01115 0.95199 0.92372 1.70089 1.07327 1.25187 1.16253 1.23195 0.98050 0.91833 0.89975 1.98426 1.63494 1.97542 1.33806 1.45044 1.25083 1.23350 1.16172 1.22438 0.91056 0.87625 1.07023 1.22687 1.00538 0.95927 0.80999 1.21804 0.96016 0.95267 0.94583 1.21873 0.96547 1.00982 0.99765 1.20657 0.93718 0.92975 0.88582 1.42392 1.57291 1.12906 1.24839 1.19197 1.20389 0.95747 1.01576 0.91335 1.24708 1.01093 0.96081 0.98974 1.69646 1.49085 1.08448 1.30980 0.86209 0.80443 0.78167 0.81504 1.21767 1.21804 1.20834 0.92033 0.91672 0.92889 0.89067 0.90504 0.78207 0.89520 0.88989 0.86936 0.91152 0.88174 0.93032 0.91245 0.92044 0.96484 0.96034 0.78105 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 7.93 37.16 0.29 -0.94 16 2 C -0.10 -1.07 3.31 -89.22 -0.30 -1.37 16 3 H 0.08 0.93 7.71 -51.93 -0.40 0.53 16 4 C 0.08 0.86 6.37 -2.41 -0.02 0.84 16 5 N -0.61 -8.56 3.31 -170.59 -0.56 -9.13 16 6 C 0.61 9.72 7.80 -12.86 -0.10 9.62 16 7 O -0.53 -10.17 15.48 5.19 0.08 -10.09 16 8 C -0.05 -0.73 6.78 -82.10 -0.56 -1.29 16 9 C 0.03 0.41 10.50 -17.48 -0.18 0.23 16 10 N -0.47 -6.15 11.21 -11.48 -0.13 -6.28 16 11 C 0.26 3.09 8.48 -90.34 -0.77 2.32 16 12 Cl 0.04 0.37 28.59 -51.86 -1.48 -1.12 16 13 N -0.41 -5.09 3.18 -118.35 -0.38 -5.46 16 14 C 0.06 0.58 10.58 59.85 0.63 1.21 16 15 C 0.12 1.89 5.90 -2.19 -0.01 1.88 16 16 C -0.08 -1.10 0.73 -152.89 -0.11 -1.22 16 17 C -0.13 -1.87 7.11 37.16 0.26 -1.61 16 18 C 0.17 3.27 4.96 -4.04 -0.02 3.25 16 19 N -0.73 -17.97 4.80 -59.91 -0.29 -18.26 16 20 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 24 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H 0.06 0.51 6.62 -51.93 -0.34 0.17 16 29 H 0.06 0.60 6.98 -51.93 -0.36 0.24 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.79 3.50 -51.93 -0.18 0.61 16 32 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 33 H 0.20 1.93 5.12 -52.48 -0.27 1.66 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.65 7.57 -51.93 -0.39 0.26 16 36 H 0.11 1.30 6.69 -51.93 -0.35 0.95 16 37 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 38 H 0.10 2.02 7.08 -51.93 -0.37 1.65 16 39 H 0.05 0.59 6.68 -51.93 -0.35 0.24 16 40 H 0.07 1.18 6.74 -51.93 -0.35 0.83 16 41 H 0.06 0.82 6.89 -51.93 -0.36 0.46 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.38 9.85 5.99 -40.82 -0.24 9.60 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -33.70 368.42 -8.64 -42.34 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.02 Total: 6.54 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.12 Total: 5.66 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -0.63 Total: -66.55 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.48 Total: -1.12 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.70 -8.64 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182102426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.710 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds