Wall clock time and date at job start Sat Apr 11 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50205 * 2 1 4 4 C 1.53199 * 109.49372 * 120.09475 * 2 1 3 5 5 N 1.46935 * 108.77396 * 65.31440 * 4 2 1 6 6 C 1.34770 * 120.62892 * 233.58529 * 5 4 2 7 7 O 1.21649 * 120.00418 * 354.69047 * 6 5 4 8 8 C 1.47032 * 119.99915 * 174.68343 * 6 5 4 9 9 C 1.38546 * 126.90692 * 268.66143 * 8 6 5 10 10 Cl 1.73601 * 127.33400 * 0.02562 * 9 8 6 11 11 C 1.39807 * 105.32512 * 179.91266 * 9 8 6 12 12 N 1.30838 * 107.87658 * 0.35681 * 11 9 8 13 13 N 1.28438 * 110.98218 * 359.77143 * 12 11 9 14 14 C 1.46496 * 125.18816 * 180.02562 * 13 12 11 15 15 C 1.46929 * 118.73652 * 53.60726 * 5 4 2 16 16 C 1.53185 * 108.77666 * 306.39136 * 15 5 4 17 17 C 1.53037 * 109.50089 * 239.92888 * 2 1 3 18 18 H 1.08995 * 109.46664 * 181.41235 * 17 2 1 19 19 C 1.53002 * 109.45644 * 61.44049 * 17 2 1 20 20 N 1.46497 * 109.47230 * 175.00108 * 19 17 2 21 21 C 1.36941 * 120.00272 * 180.27077 * 20 19 17 22 22 H 1.07996 * 119.99884 * 359.72781 * 21 20 19 23 23 C 1.38809 * 120.00166 * 179.72185 * 21 20 19 24 24 N 1.31618 * 120.00068 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00113 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47145 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47267 * 120.00226 * 25 23 21 28 28 H 1.48501 * 109.47206 * 240.00456 * 25 23 21 29 29 H 1.08992 * 109.47378 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47207 * 300.07384 * 1 2 3 31 31 H 1.09004 * 109.46379 * 60.06306 * 1 2 3 32 32 H 1.08993 * 109.58787 * 185.10297 * 4 2 1 33 33 H 1.08996 * 109.58736 * 305.38635 * 4 2 1 34 34 H 1.08001 * 126.06372 * 180.14232 * 11 9 8 35 35 H 1.08999 * 109.47219 * 274.88094 * 14 13 12 36 36 H 1.09003 * 109.47395 * 34.87414 * 14 13 12 37 37 H 1.08994 * 109.47538 * 154.87917 * 14 13 12 38 38 H 1.09006 * 109.58405 * 66.18258 * 15 5 4 39 39 H 1.08994 * 109.58529 * 186.60196 * 15 5 4 40 40 H 1.08993 * 109.49913 * 294.68326 * 16 15 5 41 41 H 1.09005 * 109.49951 * 174.58559 * 16 15 5 42 42 H 1.08994 * 109.47466 * 55.00100 * 19 17 2 43 43 H 1.09004 * 109.46977 * 294.99708 * 19 17 2 44 44 H 0.97000 * 120.00313 * 0.02562 * 20 19 17 45 45 H 0.97004 * 120.00255 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7242 1.2495 5 7 1.6513 -2.1385 1.1691 6 6 0.9745 -2.7226 2.1776 7 8 0.7649 -2.1076 3.2060 8 6 0.4893 -4.1032 2.0349 9 6 -0.7477 -4.5052 1.5577 10 17 -2.0434 -3.4905 1.0052 11 6 -0.7292 -5.9020 1.6136 12 7 0.4306 -6.2694 2.0951 13 7 1.1662 -5.2483 2.3519 14 6 2.5236 -5.3023 2.9003 15 6 2.0138 -2.9041 -0.0315 16 6 1.5029 -2.1555 -1.2665 17 6 2.0409 -0.7228 -1.2484 18 1 3.1305 -0.7445 -1.2352 19 6 1.5609 0.0176 -2.4983 20 7 2.1469 -0.6030 -3.6889 21 6 1.8629 -0.1033 -4.9318 22 1 1.2034 0.7457 -5.0347 23 6 2.4228 -0.6878 -6.0595 24 7 3.2263 -1.7227 -5.9342 25 14 2.0359 -0.0057 -7.7549 26 1 1.1144 1.1514 -7.6244 27 1 3.2937 0.4352 -8.4099 28 1 1.3926 -1.0610 -8.5781 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3632 0.5129 -0.8906 32 1 3.1273 -0.6467 1.2980 33 1 1.6026 -0.2721 2.1390 34 1 -1.5314 -6.5609 1.3157 35 1 2.4740 -5.3665 3.9873 36 1 3.0395 -6.1786 2.5079 37 1 3.0672 -4.4020 2.6140 38 1 3.0978 -3.0044 -0.0874 39 1 1.5552 -3.8919 0.0128 40 1 0.4133 -2.1351 -1.2546 41 1 1.8480 -2.6623 -2.1677 42 1 1.8698 1.0614 -2.4434 43 1 0.4738 -0.0369 -2.5579 44 1 2.7390 -1.3658 -3.5966 45 1 3.6179 -2.1310 -6.7222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184400056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:41 Heat of formation + Delta-G solvation = 51.805152 kcal Electronic energy + Delta-G solvation = -28447.254987 eV Core-core repulsion = 24527.874895 eV Total energy + Delta-G solvation = -3919.380092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.93292 -40.36393 -38.14840 -36.76232 -35.06129 -33.76311 -33.46404 -31.92977 -30.99456 -30.36842 -27.56905 -27.10725 -26.84017 -24.04805 -23.11538 -22.98839 -22.04935 -21.25187 -19.99289 -18.61357 -18.09063 -17.19468 -16.85097 -16.24585 -15.96155 -15.67351 -15.01180 -14.83817 -14.53198 -14.30978 -14.07362 -13.79220 -13.72457 -13.50944 -13.45011 -13.15836 -12.94335 -12.58573 -12.51870 -12.27257 -12.08406 -11.86934 -11.62124 -11.44483 -11.08360 -10.96040 -10.81218 -10.73725 -10.48899 -10.37524 -10.25401 -10.10123 -9.97127 -9.66762 -9.55274 -8.99473 -8.87884 -8.79532 -6.92140 -5.78507 -3.06282 1.18954 1.50968 2.05096 2.19046 2.46667 2.82746 3.42137 3.48325 3.50104 3.97492 4.15272 4.57162 4.64832 4.67807 4.72284 4.85079 4.92612 4.94094 5.01463 5.05212 5.08183 5.17457 5.38030 5.47873 5.57447 5.63277 5.73434 5.77143 5.78062 5.86715 6.01926 6.05366 6.12840 6.23871 6.26881 6.34341 6.39694 6.44872 6.62091 6.78030 6.91835 7.07270 7.58231 7.69786 7.75079 8.40961 9.52343 10.10366 10.44760 11.44579 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.003104 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.910628 B = 9017.170778 C = 9323.377025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.587 5.587 6 C 0.591 3.409 7 O -0.522 6.522 8 C -0.004 4.004 9 C -0.116 4.116 10 Cl -0.015 7.015 11 C 0.026 3.974 12 N -0.271 5.271 13 N -0.268 5.268 14 C 0.087 3.913 15 C 0.105 3.895 16 C -0.126 4.126 17 C -0.088 4.088 18 H 0.072 0.928 19 C 0.159 3.841 20 N -0.732 5.732 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.196 0.804 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.018 0.982 43 H 0.022 0.978 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -6.425 19.651 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.004 4.004 5 N -0.319 5.319 6 C 0.375 3.625 7 O -0.397 6.397 8 C -0.134 4.134 9 C -0.154 4.154 10 Cl 0.013 6.987 11 C -0.152 4.152 12 N -0.102 5.102 13 N -0.056 5.056 14 C -0.052 4.052 15 C -0.017 4.017 16 C -0.164 4.164 17 C -0.107 4.107 18 H 0.090 0.910 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.213 0.787 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.036 0.964 43 H 0.040 0.960 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.729 -6.833 20.383 21.671 hybrid contribution -0.565 0.763 -1.382 1.676 sum -3.294 -6.071 19.001 20.218 Atomic orbital electron populations 1.21901 0.94735 1.02327 1.01615 1.21485 0.96837 0.99545 0.93920 0.89692 1.21808 0.99784 0.79138 0.99703 1.48085 1.53912 1.12106 1.17843 1.16891 0.78146 0.83819 0.83673 1.90848 1.56477 1.64255 1.28075 1.21177 0.94335 0.89309 1.08599 1.21250 0.91405 0.92475 1.10267 1.98374 1.45565 1.66976 1.87762 1.23539 0.96144 0.92144 1.03403 1.73251 1.04221 1.14473 1.18225 1.45490 1.13715 1.01474 1.44919 1.22270 0.76724 1.05711 1.00539 1.21926 1.00445 0.94932 0.84419 1.21954 1.01746 0.95936 0.96766 1.21314 1.00233 0.94560 0.94613 0.90973 1.20705 0.95995 0.94608 0.85565 1.42382 1.56984 1.37370 1.00890 1.19271 1.22890 1.10770 0.83863 0.91232 1.24708 1.00089 0.98382 0.97784 1.69657 1.35738 1.24493 1.28441 0.86143 0.77403 0.78046 0.84779 1.20583 1.21914 1.21882 0.92293 0.93266 0.91799 0.90923 0.88881 0.78718 0.89121 0.87713 0.88737 0.90698 0.90467 0.90976 0.89253 0.96445 0.96004 0.78347 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.38 37.16 0.31 -1.59 16 2 C -0.10 -1.19 2.72 -90.50 -0.25 -1.44 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.31 5.81 -3.70 -0.02 1.29 16 5 N -0.59 -6.88 2.41 -174.18 -0.42 -7.29 16 6 C 0.59 7.75 6.79 -12.70 -0.09 7.66 16 7 O -0.52 -8.26 16.55 5.23 0.09 -8.18 16 8 C 0.00 -0.05 4.65 -82.00 -0.38 -0.43 16 9 C -0.12 -1.42 6.89 -38.88 -0.27 -1.68 16 10 Cl -0.02 -0.19 29.24 -51.86 -1.52 -1.70 16 11 C 0.03 0.28 12.04 -17.39 -0.21 0.07 16 12 N -0.27 -3.05 11.89 30.61 0.36 -2.69 16 13 N -0.27 -2.85 3.75 -63.85 -0.24 -3.09 16 14 C 0.09 0.58 11.22 59.84 0.67 1.26 16 15 C 0.11 1.21 6.35 -3.71 -0.02 1.19 16 16 C -0.13 -1.79 4.91 -26.61 -0.13 -1.92 16 17 C -0.09 -1.29 1.96 -90.58 -0.18 -1.47 16 18 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 19 C 0.16 3.02 5.19 -4.04 -0.02 3.00 16 20 N -0.73 -17.75 5.32 -59.91 -0.32 -18.07 16 21 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 25 Si 0.90 22.19 29.55 -169.99 -5.02 17.17 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H 0.06 0.80 5.97 -51.93 -0.31 0.49 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.86 6.58 -51.93 -0.34 0.51 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.09 7.04 -51.93 -0.37 0.72 16 34 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.57 7.66 -51.93 -0.40 0.17 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.90 6.32 -51.93 -0.33 0.57 16 40 H 0.07 1.08 6.33 -51.93 -0.33 0.75 16 41 H 0.09 1.47 7.15 -51.93 -0.37 1.10 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 44 H 0.38 9.65 6.84 -40.82 -0.28 9.37 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -32.92 375.45 -7.94 -40.85 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.42 Total: 5.46 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.83 Total: -1.21 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.11 Total: -58.06 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.92 -7.94 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184400056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.658 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds