Wall clock time and date at job start Sat Apr 11 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50205 * 2 1 4 4 C 1.53199 * 109.49372 * 120.09475 * 2 1 3 5 5 N 1.46935 * 108.77396 * 65.31440 * 4 2 1 6 6 C 1.34770 * 120.62892 * 233.58529 * 5 4 2 7 7 O 1.21649 * 120.00418 * 354.69047 * 6 5 4 8 8 C 1.47032 * 119.99915 * 174.68343 * 6 5 4 9 9 C 1.38546 * 126.90692 * 268.66143 * 8 6 5 10 10 Cl 1.73601 * 127.33400 * 0.02562 * 9 8 6 11 11 C 1.39807 * 105.32512 * 179.91266 * 9 8 6 12 12 N 1.30838 * 107.87658 * 0.35681 * 11 9 8 13 13 N 1.28438 * 110.98218 * 359.77143 * 12 11 9 14 14 C 1.46496 * 125.18816 * 180.02562 * 13 12 11 15 15 C 1.46929 * 118.73652 * 53.60726 * 5 4 2 16 16 C 1.53185 * 108.77666 * 306.39136 * 15 5 4 17 17 C 1.53037 * 109.50089 * 239.92888 * 2 1 3 18 18 H 1.08995 * 109.46664 * 181.41235 * 17 2 1 19 19 C 1.53002 * 109.45644 * 61.44049 * 17 2 1 20 20 N 1.46497 * 109.47230 * 175.00108 * 19 17 2 21 21 C 1.36941 * 120.00272 * 180.27077 * 20 19 17 22 22 H 1.07996 * 119.99884 * 359.72781 * 21 20 19 23 23 C 1.38809 * 120.00166 * 179.72185 * 21 20 19 24 24 N 1.31618 * 120.00068 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00113 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47145 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47267 * 120.00226 * 25 23 21 28 28 H 1.48501 * 109.47206 * 240.00456 * 25 23 21 29 29 H 1.08992 * 109.47378 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47207 * 300.07384 * 1 2 3 31 31 H 1.09004 * 109.46379 * 60.06306 * 1 2 3 32 32 H 1.08993 * 109.58787 * 185.10297 * 4 2 1 33 33 H 1.08996 * 109.58736 * 305.38635 * 4 2 1 34 34 H 1.08001 * 126.06372 * 180.14232 * 11 9 8 35 35 H 1.08999 * 109.47219 * 274.88094 * 14 13 12 36 36 H 1.09003 * 109.47395 * 34.87414 * 14 13 12 37 37 H 1.08994 * 109.47538 * 154.87917 * 14 13 12 38 38 H 1.09006 * 109.58405 * 66.18258 * 15 5 4 39 39 H 1.08994 * 109.58529 * 186.60196 * 15 5 4 40 40 H 1.08993 * 109.49913 * 294.68326 * 16 15 5 41 41 H 1.09005 * 109.49951 * 174.58559 * 16 15 5 42 42 H 1.08994 * 109.47466 * 55.00100 * 19 17 2 43 43 H 1.09004 * 109.46977 * 294.99708 * 19 17 2 44 44 H 0.97000 * 120.00313 * 0.02562 * 20 19 17 45 45 H 0.97004 * 120.00255 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7242 1.2495 5 7 1.6513 -2.1385 1.1691 6 6 0.9745 -2.7226 2.1776 7 8 0.7649 -2.1076 3.2060 8 6 0.4893 -4.1032 2.0349 9 6 -0.7477 -4.5052 1.5577 10 17 -2.0434 -3.4905 1.0052 11 6 -0.7292 -5.9020 1.6136 12 7 0.4306 -6.2694 2.0951 13 7 1.1662 -5.2483 2.3519 14 6 2.5236 -5.3023 2.9003 15 6 2.0138 -2.9041 -0.0315 16 6 1.5029 -2.1555 -1.2665 17 6 2.0409 -0.7228 -1.2484 18 1 3.1305 -0.7445 -1.2352 19 6 1.5609 0.0176 -2.4983 20 7 2.1469 -0.6030 -3.6889 21 6 1.8629 -0.1033 -4.9318 22 1 1.2034 0.7457 -5.0347 23 6 2.4228 -0.6878 -6.0595 24 7 3.2263 -1.7227 -5.9342 25 14 2.0359 -0.0057 -7.7549 26 1 1.1144 1.1514 -7.6244 27 1 3.2937 0.4352 -8.4099 28 1 1.3926 -1.0610 -8.5781 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3632 0.5129 -0.8906 32 1 3.1273 -0.6467 1.2980 33 1 1.6026 -0.2721 2.1390 34 1 -1.5314 -6.5609 1.3157 35 1 2.4740 -5.3665 3.9873 36 1 3.0395 -6.1786 2.5079 37 1 3.0672 -4.4020 2.6140 38 1 3.0978 -3.0044 -0.0874 39 1 1.5552 -3.8919 0.0128 40 1 0.4133 -2.1351 -1.2546 41 1 1.8480 -2.6623 -2.1677 42 1 1.8698 1.0614 -2.4434 43 1 0.4738 -0.0369 -2.5579 44 1 2.7390 -1.3658 -3.5966 45 1 3.6179 -2.1310 -6.7222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184400056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:40 Heat of formation + Delta-G solvation = 31.597181 kcal Electronic energy + Delta-G solvation = -28448.131270 eV Core-core repulsion = 24527.874895 eV Total energy + Delta-G solvation = -3920.256375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.76550 -41.40075 -39.30362 -37.68021 -36.60593 -34.96898 -34.40602 -33.32511 -32.01449 -31.90270 -28.52623 -28.28102 -27.86562 -25.66532 -24.35530 -24.12439 -22.92418 -22.55298 -20.93407 -19.73731 -19.27834 -18.74942 -17.91448 -17.09034 -16.90139 -16.82105 -16.55718 -15.85913 -15.72699 -15.44919 -15.33204 -15.30005 -14.76929 -14.72610 -14.33001 -14.11401 -14.00143 -13.76255 -13.66087 -13.55998 -12.97371 -12.93564 -12.84785 -12.80171 -12.68566 -12.49263 -12.15850 -12.04226 -11.90685 -11.64164 -11.60639 -11.54544 -11.25708 -11.18270 -10.89170 -10.37656 -9.87041 -9.81611 -8.94291 -7.93380 -5.20263 0.30783 0.67549 1.08324 1.35552 1.48150 1.48747 1.56243 1.58290 1.97189 2.57441 3.05630 3.40741 3.45939 3.68440 3.72453 3.79051 3.91619 3.98919 4.19081 4.20289 4.22317 4.30949 4.33980 4.35274 4.43360 4.51243 4.66165 4.68377 4.72160 4.77510 4.84165 4.97276 5.06404 5.08228 5.16924 5.18047 5.25343 5.28323 5.45464 5.49466 5.53414 5.60480 6.07487 6.30134 6.74819 6.76447 7.37067 8.14011 8.37589 9.30171 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.003104 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.910628 B = 9017.170778 C = 9323.377025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.100 0.900 4 C 0.119 3.881 5 N -0.581 5.581 6 C 0.597 3.403 7 O -0.552 6.552 8 C -0.019 4.019 9 C -0.131 4.131 10 Cl -0.023 7.023 11 C 0.024 3.976 12 N -0.279 5.279 13 N -0.263 5.263 14 C 0.076 3.924 15 C 0.116 3.884 16 C -0.119 4.119 17 C -0.077 4.077 18 H 0.075 0.925 19 C 0.159 3.841 20 N -0.742 5.742 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.967 3.033 26 H -0.269 1.269 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.017 0.983 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -6.365 20.520 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.118 0.882 4 C -0.002 4.002 5 N -0.312 5.312 6 C 0.382 3.618 7 O -0.429 6.429 8 C -0.150 4.150 9 C -0.169 4.169 10 Cl 0.006 6.994 11 C -0.153 4.153 12 N -0.109 5.109 13 N -0.051 5.051 14 C -0.063 4.063 15 C -0.006 4.006 16 C -0.157 4.157 17 C -0.096 4.096 18 H 0.093 0.907 19 C 0.032 3.968 20 N -0.385 5.385 21 C -0.374 4.374 22 H 0.089 0.911 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.797 3.203 26 H -0.194 1.194 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.237 0.763 35 H 0.121 0.879 36 H 0.143 0.857 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.208 0.792 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.298 -6.754 21.270 22.435 hybrid contribution -0.727 0.758 -1.613 1.925 sum -3.025 -5.996 19.657 20.772 Atomic orbital electron populations 1.21860 0.95265 1.01599 1.01559 1.21434 0.96258 1.00192 0.93061 0.88234 1.21876 1.01140 0.78456 0.98759 1.48083 1.53310 1.12382 1.17419 1.16928 0.77581 0.83974 0.83347 1.90831 1.57717 1.65073 1.29259 1.21153 0.94837 0.89497 1.09515 1.21450 0.91395 0.93116 1.10981 1.98365 1.45923 1.67269 1.87885 1.23965 0.96623 0.91900 1.02815 1.73258 1.04535 1.14681 1.18473 1.45860 1.14540 1.00699 1.44048 1.22636 0.75162 1.07059 1.01398 1.21829 1.01471 0.94393 0.82934 1.21805 1.00981 0.95836 0.97081 1.21187 1.00287 0.94461 0.93621 0.90656 1.20837 0.95372 0.94793 0.85754 1.42557 1.57002 1.37320 1.01581 1.19625 1.22074 1.10389 0.85324 0.91134 1.25449 1.00652 0.99083 1.01187 1.69792 1.37082 1.25852 1.29004 0.85168 0.77116 0.77559 0.80506 1.19364 1.22018 1.22135 0.93377 0.92318 0.92811 0.88602 0.88927 0.76346 0.87864 0.85749 0.88005 0.88674 0.90330 0.92115 0.91784 0.96435 0.96539 0.79161 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.38 71.98 0.60 -2.97 16 2 C -0.09 -2.02 2.72 -10.71 -0.03 -2.05 16 3 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 4 C 0.12 2.37 5.81 86.36 0.50 2.87 16 5 N -0.58 -12.59 2.41 -823.22 -1.98 -14.58 16 6 C 0.60 14.88 6.79 86.55 0.59 15.47 16 7 O -0.55 -16.89 16.55 -4.18 -0.07 -16.96 16 8 C -0.02 -0.44 4.65 40.76 0.19 -0.25 16 9 C -0.13 -3.10 6.89 22.72 0.16 -2.94 16 10 Cl -0.02 -0.55 29.24 -2.72 -0.08 -0.63 16 11 C 0.02 0.49 12.04 85.22 1.03 1.51 16 12 N -0.28 -5.84 11.89 -57.06 -0.68 -6.51 16 13 N -0.26 -5.17 3.75 -355.93 -1.34 -6.50 16 14 C 0.08 0.85 11.22 127.77 1.43 2.28 16 15 C 0.12 2.50 6.35 86.36 0.55 3.05 16 16 C -0.12 -3.32 4.91 30.67 0.15 -3.17 16 17 C -0.08 -2.15 1.96 -10.77 -0.02 -2.18 16 18 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 19 C 0.16 5.98 5.19 86.38 0.45 6.43 16 20 N -0.74 -36.13 5.32 -343.46 -1.83 -37.96 16 21 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 22 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 24 N -0.97 -57.67 13.06 21.65 0.28 -57.39 16 25 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H 0.05 1.28 5.97 -2.39 -0.01 1.27 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.41 6.58 -2.38 -0.02 1.40 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.95 7.04 -2.39 -0.02 1.94 16 34 H 0.22 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.10 0.99 7.66 -2.39 -0.02 0.97 16 38 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.08 1.73 6.32 -2.39 -0.02 1.71 16 40 H 0.06 1.83 6.33 -2.39 -0.02 1.81 16 41 H 0.06 2.14 7.15 -2.38 -0.02 2.12 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.02 0.65 6.74 -2.38 -0.02 0.64 16 44 H 0.38 19.17 6.84 -92.71 -0.63 18.54 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -70.15 375.45 3.62 -66.52 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.39 Total: 24.30 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 6.90 Total: 2.03 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -5.54 Total: -122.94 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.07 Total: -16.96 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -70.15 3.62 -66.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184400056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.120 kcal (2) G-P(sol) polarization free energy of solvation -70.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds