Wall clock time and date at job start Sat Apr 11 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.52172 * 2 1 4 4 C 1.53193 * 109.49607 * 120.07593 * 2 1 3 5 5 N 1.46923 * 108.77724 * 174.58849 * 4 2 1 6 6 C 1.34772 * 120.63460 * 126.36945 * 5 4 2 7 7 O 1.21580 * 119.99849 * 4.84173 * 6 5 4 8 8 C 1.47659 * 120.00348 * 184.84835 * 6 5 4 9 9 N 1.31824 * 126.45991 * 354.45380 * 8 6 5 10 10 N 1.28475 * 110.13986 * 179.73996 * 9 8 6 11 11 C 1.46493 * 124.93740 * 179.97438 * 10 9 8 12 12 C 1.35644 * 110.12869 * 359.97438 * 10 9 8 13 13 C 1.35466 * 107.13327 * 0.02562 * 12 10 9 14 14 Cl 1.73594 * 127.24107 * 180.02562 * 13 12 10 15 15 C 1.46927 * 118.73458 * 306.64643 * 5 4 2 16 16 C 1.52749 * 109.01178 * 53.30830 * 15 5 4 17 17 C 1.53036 * 109.49864 * 239.91330 * 2 1 3 18 18 H 1.08999 * 109.46174 * 298.70734 * 17 2 1 19 19 C 1.53002 * 109.45966 * 58.67909 * 17 2 1 20 20 N 1.46500 * 109.47014 * 184.99936 * 19 17 2 21 21 C 1.36937 * 119.99874 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00146 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00156 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00084 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99649 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47566 * 89.99621 * 25 23 21 27 27 H 1.48502 * 109.46884 * 209.99343 * 25 23 21 28 28 H 1.48504 * 109.47177 * 329.99160 * 25 23 21 29 29 H 1.08996 * 109.46805 * 299.92541 * 1 2 3 30 30 H 1.09000 * 109.46747 * 59.92013 * 1 2 3 31 31 H 1.08997 * 109.47030 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.58464 * 54.79929 * 4 2 1 33 33 H 1.09001 * 109.58695 * 294.37612 * 4 2 1 34 34 H 1.08998 * 109.47605 * 90.02594 * 11 10 9 35 35 H 1.09001 * 109.47035 * 210.02228 * 11 10 9 36 36 H 1.09004 * 109.47265 * 330.01972 * 11 10 9 37 37 H 1.07995 * 126.43514 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.58750 * 173.14414 * 15 5 4 39 39 H 1.08997 * 109.58398 * 293.56355 * 15 5 4 40 40 H 1.09004 * 109.56936 * 185.55012 * 16 15 5 41 41 H 1.09002 * 109.39233 * 65.51656 * 16 15 5 42 42 H 1.08999 * 109.47077 * 304.99810 * 19 17 2 43 43 H 1.09008 * 109.47018 * 64.99690 * 19 17 2 44 44 H 0.96996 * 120.00139 * 359.97438 * 20 19 17 45 45 H 0.97002 * 119.99928 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 3.5046 -0.8290 1.1698 6 6 4.2811 -0.3855 2.1780 7 8 3.7713 0.0263 3.2021 8 6 5.7511 -0.3994 2.0390 9 7 6.4383 -0.9082 1.0357 10 7 7.6971 -0.7443 1.2336 11 6 8.7544 -1.1876 0.3216 12 6 7.9049 -0.1011 2.4096 13 6 6.6878 0.1367 2.9549 14 17 6.3483 0.9326 4.4598 15 6 4.1055 -1.4215 -0.0330 16 6 3.5709 -0.6951 -1.2658 17 6 2.0409 -0.7232 -1.2482 18 1 1.6967 -1.7573 -1.2351 19 6 1.5041 -0.0232 -2.4984 20 7 1.8935 -0.7832 -3.6887 21 6 1.5223 -0.3457 -4.9321 22 1 0.9429 0.5598 -5.0352 23 6 1.8917 -1.0654 -6.0601 24 7 1.5345 -0.6452 -7.2551 25 14 2.8946 -2.6313 -5.8818 26 1 1.9793 -3.7926 -5.7450 27 1 3.7476 -2.8123 -7.0838 28 1 3.7543 -2.5337 -4.6748 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6052 -1.7215 1.2981 33 1 1.7637 -0.1578 2.1389 34 1 8.9759 -0.3935 -0.3914 35 1 9.6520 -1.4233 0.8933 36 1 8.4221 -2.0760 -0.2155 37 1 8.8611 0.1697 2.8323 38 1 5.1895 -1.3159 0.0102 39 1 3.8412 -2.4774 -0.0912 40 1 3.9336 -1.1898 -2.1669 41 1 3.9160 0.3388 -1.2546 42 1 0.4170 0.0347 -2.4438 43 1 1.9191 0.9831 -2.5578 44 1 2.4143 -1.5962 -3.5962 45 1 1.7924 -1.1484 -8.0433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184449682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:55 Heat of formation + Delta-G solvation = 66.620093 kcal Electronic energy + Delta-G solvation = -27920.933188 eV Core-core repulsion = 24002.195520 eV Total energy + Delta-G solvation = -3918.737668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.11825 -40.08448 -37.99110 -36.72949 -35.10640 -34.05985 -33.34420 -31.99414 -31.08114 -30.64638 -28.35239 -27.12228 -26.42508 -23.99221 -22.74316 -22.42762 -21.84622 -21.10711 -20.15436 -19.36054 -17.66811 -17.58878 -16.90762 -16.80950 -15.95758 -15.16966 -14.98801 -14.79222 -14.54839 -14.30192 -14.15361 -13.82299 -13.61526 -13.36207 -13.25833 -13.22150 -13.11196 -12.79224 -12.50121 -12.12925 -11.98536 -11.84458 -11.78363 -11.33353 -11.28581 -10.95721 -10.84267 -10.81904 -10.45447 -10.21241 -10.11190 -10.04895 -9.75945 -9.64976 -9.56006 -9.14983 -8.86403 -8.55446 -7.19094 -5.75446 -3.09949 1.17006 1.52231 1.57145 2.30517 2.93426 3.20665 3.35413 3.38693 3.43982 3.95413 4.21550 4.37321 4.58614 4.59463 4.77826 4.84082 4.88974 4.91675 4.97285 5.04410 5.18165 5.33212 5.40202 5.53148 5.55892 5.65955 5.71894 5.78426 5.83073 5.87918 5.95692 5.98144 6.21085 6.21782 6.27527 6.38989 6.45870 6.47121 6.64463 6.80005 6.88533 7.27619 7.47149 8.02145 8.09647 8.44013 9.23701 9.96122 10.16754 11.43360 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.003168 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.184632 B = 8836.793070 C =10451.249625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.074 0.926 4 C 0.119 3.881 5 N -0.593 5.593 6 C 0.598 3.402 7 O -0.524 6.524 8 C 0.008 3.992 9 N -0.244 5.244 10 N -0.282 5.282 11 C 0.084 3.916 12 C 0.002 3.998 13 C -0.104 4.104 14 Cl -0.009 7.009 15 C 0.072 3.928 16 C -0.123 4.123 17 C -0.094 4.094 18 H 0.071 0.929 19 C 0.161 3.839 20 N -0.755 5.755 21 C -0.240 4.240 22 H 0.089 0.911 23 C 0.002 3.998 24 N -0.936 5.936 25 Si 0.884 3.116 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.192 0.808 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.024 0.976 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.409 -1.229 22.411 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.003 4.003 5 N -0.325 5.325 6 C 0.383 3.617 7 O -0.399 6.399 8 C -0.153 4.153 9 N -0.079 5.079 10 N -0.069 5.069 11 C -0.056 4.056 12 C -0.143 4.143 13 C -0.141 4.141 14 Cl 0.020 6.980 15 C -0.052 4.052 16 C -0.162 4.162 17 C -0.113 4.113 18 H 0.089 0.911 19 C 0.034 3.966 20 N -0.401 5.401 21 C -0.370 4.370 22 H 0.107 0.893 23 C -0.194 4.194 24 N -0.585 5.585 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.209 0.791 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.042 0.958 44 H 0.192 0.808 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.000 -1.399 21.814 26.510 hybrid contribution 0.931 -0.709 0.537 1.287 sum 15.931 -2.108 22.350 27.528 Atomic orbital electron populations 1.21835 0.94195 1.02215 1.02231 1.21448 0.96196 0.99992 0.93964 0.90727 1.21755 0.78256 1.01037 0.99265 1.47935 1.06862 1.59619 1.18070 1.16869 0.83280 0.78059 0.83473 1.90815 1.73362 1.47561 1.28152 1.21938 0.95085 1.05149 0.93106 1.73353 0.90354 1.21375 1.22814 1.45665 1.05135 1.40153 1.15946 1.22325 0.87247 1.02861 0.93117 1.22649 0.99697 1.02707 0.89209 1.20783 0.92501 1.07332 0.93510 1.98367 1.95197 1.77474 1.26970 1.22728 1.02369 0.96616 0.83447 1.21831 0.95754 1.01314 0.97271 1.21419 0.94997 1.00118 0.94791 0.91090 1.20743 0.97175 0.94077 0.84625 1.42734 1.66024 1.28711 1.02625 1.19079 1.28085 1.07883 0.81963 0.89302 1.24671 1.00830 0.98733 0.95119 1.69704 1.51092 1.40632 0.97032 0.86548 0.80472 0.84767 0.76737 1.21124 1.21821 1.20350 0.92846 0.91189 0.92508 0.91343 0.88995 0.89009 0.88234 0.87924 0.79091 0.84870 0.91822 0.90178 0.91749 0.94961 0.95794 0.80757 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.82 37.16 0.33 -1.45 16 2 C -0.10 -1.27 2.41 -90.50 -0.22 -1.49 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.52 5.71 -3.71 -0.02 1.50 16 5 N -0.59 -8.14 2.98 -174.22 -0.52 -8.66 16 6 C 0.60 8.88 7.70 -12.42 -0.10 8.78 16 7 O -0.52 -8.83 15.33 5.30 0.08 -8.75 16 8 C 0.01 0.10 6.90 -82.76 -0.57 -0.47 16 9 N -0.24 -2.75 8.30 33.42 0.28 -2.48 16 10 N -0.28 -2.26 3.72 -67.95 -0.25 -2.51 16 11 C 0.08 0.28 11.32 59.84 0.68 0.96 16 12 C 0.00 0.01 11.49 -16.86 -0.19 -0.18 16 13 C -0.10 -1.17 6.80 -39.31 -0.27 -1.44 16 14 Cl -0.01 -0.10 28.19 -51.86 -1.46 -1.56 16 15 C 0.07 0.94 6.30 -3.94 -0.02 0.91 16 16 C -0.12 -1.84 5.23 -26.84 -0.14 -1.98 16 17 C -0.09 -1.44 1.73 -90.58 -0.16 -1.60 16 18 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 19 C 0.16 3.10 5.41 -4.04 -0.02 3.08 16 20 N -0.76 -17.85 5.12 -59.90 -0.31 -18.16 16 21 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 23 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 24 N -0.94 -29.54 13.97 55.49 0.78 -28.76 16 25 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 26 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.91 6.30 -51.93 -0.33 0.59 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.21 7.03 -51.93 -0.37 0.85 16 34 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.10 0.04 8.13 -51.93 -0.42 -0.38 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.13 1.69 3.69 -119.63 -0.44 1.25 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.30 7.15 -51.93 -0.37 0.93 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.03 0.63 6.14 -51.93 -0.32 0.31 16 43 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 44 H 0.36 8.23 4.70 -40.82 -0.19 8.04 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -35.47 370.86 -8.17 -43.64 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.68 Total: 4.83 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.96 Total: -0.40 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.03 Total: -60.56 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.46 Total: -1.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.47 -8.17 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184449682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.258 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds