Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52098 * 2 1 4 4 C 1.53184 * 109.49973 * 239.91533 * 2 1 3 5 5 N 1.46928 * 108.77992 * 294.68734 * 4 2 1 6 6 C 1.34777 * 120.63287 * 126.40782 * 5 4 2 7 7 O 1.21617 * 120.00073 * 354.50850 * 6 5 4 8 8 C 1.47295 * 119.99612 * 174.50467 * 6 5 4 9 9 C 1.41338 * 126.44063 * 320.19761 * 8 6 5 10 10 N 1.30408 * 108.05217 * 179.85179 * 9 8 6 11 11 N 1.39930 * 108.96077 * 0.41290 * 10 9 8 12 12 C 1.46502 * 125.75355 * 179.73619 * 11 10 9 13 13 C 1.34347 * 108.49561 * 359.72938 * 11 10 9 14 14 Cl 1.73599 * 126.31800 * 180.02562 * 13 11 10 15 15 C 1.46926 * 118.73112 * 306.38965 * 5 4 2 16 16 C 1.53188 * 108.77837 * 53.60792 * 15 5 4 17 17 C 1.53040 * 109.49645 * 120.07507 * 2 1 3 18 18 H 1.08999 * 109.44809 * 178.59844 * 17 2 1 19 19 C 1.52999 * 109.46382 * 298.56790 * 17 2 1 20 20 N 1.46500 * 109.47082 * 185.06236 * 19 17 2 21 21 C 1.36936 * 120.00047 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99577 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00034 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00534 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00060 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46753 * 59.99932 * 25 23 21 27 27 H 1.48493 * 109.47393 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47221 * 300.00251 * 25 23 21 29 29 H 1.08997 * 109.47176 * 299.91886 * 1 2 3 30 30 H 1.09004 * 109.46945 * 59.92118 * 1 2 3 31 31 H 1.08996 * 109.46989 * 179.91840 * 1 2 3 32 32 H 1.08997 * 109.59297 * 174.89213 * 4 2 1 33 33 H 1.09006 * 109.70455 * 54.54186 * 4 2 1 34 34 H 1.07999 * 125.97569 * 0.02562 * 9 8 6 35 35 H 1.08995 * 109.47033 * 269.99399 * 12 11 10 36 36 H 1.09001 * 109.46651 * 29.99686 * 12 11 10 37 37 H 1.08997 * 109.47019 * 149.99567 * 12 11 10 38 38 H 1.08993 * 109.59007 * 293.81669 * 15 5 4 39 39 H 1.09000 * 109.58204 * 173.39163 * 15 5 4 40 40 H 1.09003 * 109.50137 * 185.40609 * 16 15 5 41 41 H 1.09002 * 109.52362 * 65.32821 * 16 15 5 42 42 H 1.09005 * 109.46654 * 65.06676 * 19 17 2 43 43 H 1.08997 * 109.46961 * 305.06839 * 19 17 2 44 44 H 0.97000 * 119.99931 * 0.02562 * 20 19 17 45 45 H 0.97006 * 119.99343 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 1.6515 -2.1382 -1.1695 6 6 0.9747 -2.7221 -2.1782 7 8 0.5937 -2.0552 -3.1211 8 6 0.6967 -4.1680 -2.1386 9 6 1.5768 -5.1803 -1.6931 10 7 0.9663 -6.3267 -1.8098 11 7 -0.3118 -6.1097 -2.3367 12 6 -1.3071 -7.1459 -2.6228 13 6 -0.4723 -4.7908 -2.5358 14 17 -1.8866 -4.0119 -3.1736 15 6 2.0140 -2.9040 0.0309 16 6 1.5030 -2.1557 1.2661 17 6 2.0408 -0.7230 1.2484 18 1 3.1305 -0.7443 1.2351 19 6 1.5606 0.0172 2.4984 20 7 2.1479 -0.6028 3.6888 21 6 1.8600 -0.1063 4.9321 22 1 1.1997 0.7421 5.0351 23 6 2.4168 -0.6934 6.0599 24 7 3.2220 -1.7270 5.9344 25 14 2.0235 -0.0165 7.7560 26 1 0.5600 -0.0984 7.9944 27 1 2.7384 -0.8134 8.7850 28 1 2.4597 1.4007 7.8368 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 3.1275 -0.6463 -1.2980 33 1 1.6028 -0.2738 -2.1402 34 1 2.5786 -5.0303 -1.3186 35 1 -1.1783 -7.5008 -3.6453 36 1 -1.1753 -7.9772 -1.9302 37 1 -2.3079 -6.7305 -2.5057 38 1 3.0979 -3.0043 0.0869 39 1 1.5554 -3.8918 -0.0136 40 1 1.8480 -2.6627 2.1672 41 1 0.4133 -2.1354 1.2547 42 1 0.4737 -0.0385 2.5585 43 1 1.8685 1.0613 2.4431 44 1 2.7413 -1.3645 3.5962 45 1 3.4259 -2.0787 5.0536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184661868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = 52.757052 kcal Electronic energy + Delta-G solvation = -27998.839902 eV Core-core repulsion = 24079.501088 eV Total energy + Delta-G solvation = -3919.338814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87687 -40.10227 -37.93922 -37.29668 -35.11446 -34.14232 -33.30819 -31.83204 -30.56010 -30.17383 -27.95308 -26.88486 -26.33558 -23.73390 -23.12737 -22.72385 -21.64480 -21.37038 -20.03395 -18.55859 -17.82021 -17.21234 -16.76061 -16.29454 -15.92312 -15.36538 -15.11887 -14.91689 -14.47172 -14.20449 -14.04063 -13.82522 -13.62222 -13.49800 -13.27267 -13.17292 -12.88445 -12.78064 -12.45739 -12.38498 -12.18908 -12.07357 -11.58708 -11.37735 -11.22473 -10.95897 -10.69737 -10.69330 -10.35459 -10.22534 -10.14685 -9.94013 -9.93160 -9.75152 -9.14888 -9.04258 -8.84535 -8.54478 -6.96553 -6.08564 -3.07333 0.93721 0.98459 1.81379 2.10475 2.81375 3.14180 3.52648 3.56107 3.73510 3.93622 4.46178 4.56901 4.62632 4.67610 4.81898 4.84203 4.90447 4.93989 5.00622 5.05682 5.15666 5.25583 5.46181 5.54845 5.64154 5.72730 5.77958 5.82215 5.84410 5.90974 5.96939 6.03469 6.06650 6.19655 6.26939 6.36434 6.41829 6.49537 6.62498 6.76802 6.90068 6.97977 7.38261 7.83298 8.15481 8.78036 9.26111 10.12302 10.27695 11.40199 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.002792 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.964809 B =10026.413250 C =10804.243323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.119 3.881 5 N -0.598 5.598 6 C 0.595 3.405 7 O -0.537 6.537 8 C -0.262 4.262 9 C 0.090 3.910 10 N -0.271 5.271 11 N -0.355 5.355 12 C 0.091 3.909 13 C 0.175 3.825 14 Cl 0.022 6.978 15 C 0.101 3.899 16 C -0.126 4.126 17 C -0.090 4.090 18 H 0.070 0.930 19 C 0.164 3.836 20 N -0.743 5.743 21 C -0.329 4.329 22 H 0.063 0.937 23 C -0.046 4.046 24 N -0.945 5.945 25 Si 1.079 2.921 26 H -0.296 1.296 27 H -0.285 1.285 28 H -0.296 1.296 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.201 0.799 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.022 0.978 43 H 0.018 0.982 44 H 0.366 0.634 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 -8.578 -20.913 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.003 4.003 5 N -0.331 5.331 6 C 0.382 3.618 7 O -0.414 6.414 8 C -0.279 4.279 9 C -0.096 4.096 10 N -0.092 5.092 11 N -0.137 5.137 12 C -0.050 4.050 13 C 0.017 3.983 14 Cl 0.050 6.950 15 C -0.022 4.022 16 C -0.164 4.164 17 C -0.108 4.108 18 H 0.089 0.911 19 C 0.037 3.963 20 N -0.389 5.389 21 C -0.460 4.460 22 H 0.081 0.919 23 C -0.244 4.244 24 N -0.591 5.591 25 Si 0.910 3.090 26 H -0.223 1.223 27 H -0.211 1.211 28 H -0.223 1.223 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.218 0.782 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.199 0.801 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.746 -9.524 -19.670 23.186 hybrid contribution -0.376 0.829 -1.714 1.941 sum -8.122 -8.695 -21.384 24.471 Atomic orbital electron populations 1.21847 0.94855 1.01986 1.01432 1.21455 0.96725 0.99430 0.94100 0.90017 1.21687 0.99338 0.79929 0.99313 1.47861 1.55994 1.11530 1.17665 1.17055 0.77540 0.85028 0.82142 1.90779 1.51927 1.64435 1.34251 1.19871 0.95099 0.95482 1.17400 1.24112 1.00232 0.88322 0.96972 1.77374 0.89868 1.22511 1.19449 1.48528 1.13066 1.03913 1.48209 1.22109 0.89179 0.90198 1.03491 1.21980 0.91753 0.84997 0.99611 1.98451 1.35091 1.77627 1.83803 1.22050 1.00322 0.95466 0.84343 1.21949 1.01516 0.95964 0.96980 1.21326 1.00129 0.94707 0.94682 0.91141 1.20648 0.95895 0.94584 0.85209 1.42388 1.57209 1.37501 1.01793 1.20029 1.27007 1.13663 0.85282 0.91922 1.25737 0.98264 0.98027 1.02330 1.70895 1.37933 1.25265 1.25022 0.83254 0.75368 0.74912 0.75478 1.22333 1.21051 1.22322 0.92108 0.93188 0.92627 0.91443 0.88952 0.78204 0.89671 0.88007 0.88920 0.91042 0.89633 0.89928 0.91329 0.96022 0.96446 0.80062 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.38 37.16 0.31 -1.63 16 2 C -0.10 -1.26 2.72 -90.50 -0.25 -1.51 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.44 5.84 -3.71 -0.02 1.42 16 5 N -0.60 -7.37 2.41 -174.09 -0.42 -7.79 16 6 C 0.59 8.12 7.48 -12.58 -0.09 8.02 16 7 O -0.54 -8.70 16.03 5.26 0.08 -8.62 16 8 C -0.26 -3.19 5.22 -105.02 -0.55 -3.74 16 9 C 0.09 0.94 9.62 -16.98 -0.16 0.78 16 10 N -0.27 -2.99 12.49 30.86 0.39 -2.60 16 11 N -0.35 -3.50 3.98 -64.32 -0.26 -3.75 16 12 C 0.09 0.49 11.28 59.85 0.68 1.17 16 13 C 0.17 1.98 7.52 -16.44 -0.12 1.85 16 14 Cl 0.02 0.23 28.14 -51.86 -1.46 -1.23 16 15 C 0.10 1.16 5.46 -3.71 -0.02 1.14 16 16 C -0.13 -1.82 4.90 -26.61 -0.13 -1.95 16 17 C -0.09 -1.36 1.96 -90.58 -0.18 -1.54 16 18 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 19 C 0.16 3.25 5.18 -4.04 -0.02 3.23 16 20 N -0.74 -18.42 5.32 -59.91 -0.32 -18.74 16 21 C -0.33 -9.30 9.99 -15.06 -0.15 -9.45 16 22 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 24 N -0.95 -29.00 13.70 55.49 0.76 -28.24 16 25 Si 1.08 25.98 29.92 -169.99 -5.09 20.89 16 26 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 29 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.79 5.97 -51.93 -0.31 0.48 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.17 6.99 -51.93 -0.36 0.81 16 34 H 0.20 1.55 7.32 -52.49 -0.38 1.17 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.38 7.77 -51.93 -0.40 -0.03 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.92 4.75 -51.93 -0.25 0.68 16 40 H 0.08 1.35 7.15 -51.93 -0.37 0.98 16 41 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 42 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.37 9.14 5.68 -40.82 -0.23 8.90 16 45 H 0.25 7.61 6.77 -40.82 -0.28 7.33 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -34.85 369.40 -7.75 -42.60 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.20 Total: 5.57 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -0.81 Total: -3.64 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.15 Total: -61.14 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.09 Total: 20.89 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.46 Total: -1.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.85 -7.75 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184661868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.352 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds