Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52098 * 2 1 4 4 C 1.53184 * 109.49973 * 239.91533 * 2 1 3 5 5 N 1.46928 * 108.77992 * 294.68734 * 4 2 1 6 6 C 1.34777 * 120.63287 * 126.40782 * 5 4 2 7 7 O 1.21617 * 120.00073 * 354.50850 * 6 5 4 8 8 C 1.47295 * 119.99612 * 174.50467 * 6 5 4 9 9 C 1.41338 * 126.44063 * 320.19761 * 8 6 5 10 10 N 1.30408 * 108.05217 * 179.85179 * 9 8 6 11 11 N 1.39930 * 108.96077 * 0.41290 * 10 9 8 12 12 C 1.46502 * 125.75355 * 179.73619 * 11 10 9 13 13 C 1.34347 * 108.49561 * 359.72938 * 11 10 9 14 14 Cl 1.73599 * 126.31800 * 180.02562 * 13 11 10 15 15 C 1.46926 * 118.73112 * 306.38965 * 5 4 2 16 16 C 1.53188 * 108.77837 * 53.60792 * 15 5 4 17 17 C 1.53040 * 109.49645 * 120.07507 * 2 1 3 18 18 H 1.08999 * 109.44809 * 178.59844 * 17 2 1 19 19 C 1.52999 * 109.46382 * 298.56790 * 17 2 1 20 20 N 1.46500 * 109.47082 * 185.06236 * 19 17 2 21 21 C 1.36936 * 120.00047 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99577 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00034 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00534 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00060 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46753 * 59.99932 * 25 23 21 27 27 H 1.48493 * 109.47393 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47221 * 300.00251 * 25 23 21 29 29 H 1.08997 * 109.47176 * 299.91886 * 1 2 3 30 30 H 1.09004 * 109.46945 * 59.92118 * 1 2 3 31 31 H 1.08996 * 109.46989 * 179.91840 * 1 2 3 32 32 H 1.08997 * 109.59297 * 174.89213 * 4 2 1 33 33 H 1.09006 * 109.70455 * 54.54186 * 4 2 1 34 34 H 1.07999 * 125.97569 * 0.02562 * 9 8 6 35 35 H 1.08995 * 109.47033 * 269.99399 * 12 11 10 36 36 H 1.09001 * 109.46651 * 29.99686 * 12 11 10 37 37 H 1.08997 * 109.47019 * 149.99567 * 12 11 10 38 38 H 1.08993 * 109.59007 * 293.81669 * 15 5 4 39 39 H 1.09000 * 109.58204 * 173.39163 * 15 5 4 40 40 H 1.09003 * 109.50137 * 185.40609 * 16 15 5 41 41 H 1.09002 * 109.52362 * 65.32821 * 16 15 5 42 42 H 1.09005 * 109.46654 * 65.06676 * 19 17 2 43 43 H 1.08997 * 109.46961 * 305.06839 * 19 17 2 44 44 H 0.97000 * 119.99931 * 0.02562 * 20 19 17 45 45 H 0.97006 * 119.99343 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 1.6515 -2.1382 -1.1695 6 6 0.9747 -2.7221 -2.1782 7 8 0.5937 -2.0552 -3.1211 8 6 0.6967 -4.1680 -2.1386 9 6 1.5768 -5.1803 -1.6931 10 7 0.9663 -6.3267 -1.8098 11 7 -0.3118 -6.1097 -2.3367 12 6 -1.3071 -7.1459 -2.6228 13 6 -0.4723 -4.7908 -2.5358 14 17 -1.8866 -4.0119 -3.1736 15 6 2.0140 -2.9040 0.0309 16 6 1.5030 -2.1557 1.2661 17 6 2.0408 -0.7230 1.2484 18 1 3.1305 -0.7443 1.2351 19 6 1.5606 0.0172 2.4984 20 7 2.1479 -0.6028 3.6888 21 6 1.8600 -0.1063 4.9321 22 1 1.1997 0.7421 5.0351 23 6 2.4168 -0.6934 6.0599 24 7 3.2220 -1.7270 5.9344 25 14 2.0235 -0.0165 7.7560 26 1 0.5600 -0.0984 7.9944 27 1 2.7384 -0.8134 8.7850 28 1 2.4597 1.4007 7.8368 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 3.1275 -0.6463 -1.2980 33 1 1.6028 -0.2738 -2.1402 34 1 2.5786 -5.0303 -1.3186 35 1 -1.1783 -7.5008 -3.6453 36 1 -1.1753 -7.9772 -1.9302 37 1 -2.3079 -6.7305 -2.5057 38 1 3.0979 -3.0043 0.0869 39 1 1.5554 -3.8918 -0.0136 40 1 1.8480 -2.6627 2.1672 41 1 0.4133 -2.1354 1.2547 42 1 0.4737 -0.0385 2.5585 43 1 1.8685 1.0613 2.4431 44 1 2.7413 -1.3645 3.5962 45 1 3.4259 -2.0787 5.0536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184661868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = 30.574402 kcal Electronic energy + Delta-G solvation = -27999.801814 eV Core-core repulsion = 24079.501088 eV Total energy + Delta-G solvation = -3920.300726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.69158 -41.15192 -39.12697 -38.11696 -36.78524 -35.19717 -34.39548 -33.19073 -31.84567 -31.39945 -28.70450 -28.32741 -27.35118 -25.48958 -24.43384 -23.80679 -22.75005 -22.35494 -21.02747 -19.76282 -19.24441 -18.64005 -17.71935 -17.07651 -16.92477 -16.70973 -16.29901 -16.10964 -15.81745 -15.47769 -15.31701 -15.07403 -14.87481 -14.58706 -14.32893 -14.14415 -13.88658 -13.64116 -13.63622 -13.54475 -13.18849 -12.88473 -12.77442 -12.65614 -12.62388 -12.43375 -12.09021 -12.04605 -11.89602 -11.73893 -11.42835 -11.40839 -11.11349 -10.94067 -10.87349 -10.57080 -9.91531 -9.55924 -9.05823 -8.37080 -5.29986 0.12270 0.15999 0.97998 1.43256 1.59348 1.68790 1.84297 1.85483 2.18061 2.72530 3.21234 3.41737 3.60487 3.67170 3.73333 3.81379 3.86880 3.99330 4.14246 4.21310 4.25844 4.26945 4.33188 4.38828 4.43748 4.56226 4.62615 4.70323 4.77643 4.82664 4.83232 4.94750 5.04171 5.09447 5.11532 5.16356 5.20765 5.30358 5.38599 5.49948 5.60870 5.61844 6.19982 6.37687 6.53974 7.13718 7.13986 8.04753 8.15409 9.15389 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.002792 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.964809 B =10026.413250 C =10804.243323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.596 3.404 7 O -0.567 6.567 8 C -0.286 4.286 9 C 0.094 3.906 10 N -0.286 5.286 11 N -0.350 5.350 12 C 0.078 3.922 13 C 0.168 3.832 14 Cl 0.025 6.975 15 C 0.110 3.890 16 C -0.120 4.120 17 C -0.078 4.078 18 H 0.073 0.927 19 C 0.164 3.836 20 N -0.753 5.753 21 C -0.335 4.335 22 H 0.061 0.939 23 C -0.102 4.102 24 N -0.973 5.973 25 Si 1.125 2.875 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.224 0.776 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.363 0.637 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -8.867 -21.575 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.111 0.889 4 C 0.000 4.000 5 N -0.326 5.326 6 C 0.384 3.616 7 O -0.447 6.447 8 C -0.302 4.302 9 C -0.092 4.092 10 N -0.108 5.108 11 N -0.132 5.132 12 C -0.060 4.060 13 C 0.008 3.992 14 Cl 0.053 6.947 15 C -0.013 4.013 16 C -0.158 4.158 17 C -0.097 4.097 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.398 5.398 21 C -0.467 4.467 22 H 0.079 0.921 23 C -0.293 4.293 24 N -0.621 5.621 25 Si 0.950 3.050 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.240 0.760 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.196 0.804 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.852 -9.815 -20.364 23.931 hybrid contribution -0.436 0.913 -1.563 1.862 sum -8.288 -8.902 -21.927 25.075 Atomic orbital electron populations 1.21785 0.95271 1.01251 1.01299 1.21404 0.96241 0.99923 0.93360 0.88918 1.21697 1.00416 0.79605 0.98263 1.47876 1.55566 1.11683 1.17513 1.17246 0.76945 0.85555 0.81806 1.90757 1.53220 1.65291 1.35443 1.19892 0.96160 0.95030 1.19107 1.24451 1.00890 0.87550 0.96313 1.77344 0.90535 1.22881 1.20007 1.48872 1.13200 1.04093 1.47022 1.22509 0.88872 0.89736 1.04922 1.22109 0.91821 0.85733 0.99517 1.98448 1.34800 1.77692 1.83731 1.22028 1.01555 0.95208 0.82476 1.21833 1.00707 0.95632 0.97655 1.21202 1.00159 0.94874 0.93436 0.90870 1.20769 0.95179 0.94615 0.85623 1.42557 1.57352 1.37587 1.02311 1.20362 1.26215 1.13257 0.86850 0.92136 1.27110 0.98156 0.98014 1.06032 1.70993 1.39731 1.26753 1.24663 0.82656 0.75955 0.74985 0.71388 1.20623 1.21741 1.20533 0.93184 0.92299 0.93660 0.89504 0.89278 0.75988 0.87909 0.86755 0.87588 0.88866 0.88610 0.92057 0.92541 0.96739 0.96878 0.80411 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.38 71.98 0.60 -3.04 16 2 C -0.09 -2.20 2.72 -10.72 -0.03 -2.23 16 3 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.12 2.71 5.84 86.36 0.50 3.21 16 5 N -0.59 -13.73 2.41 -822.95 -1.98 -15.71 16 6 C 0.60 15.60 7.48 86.63 0.65 16.25 16 7 O -0.57 -18.01 16.03 -4.08 -0.07 -18.07 16 8 C -0.29 -6.61 5.22 -20.12 -0.11 -6.71 16 9 C 0.09 1.81 9.62 85.67 0.82 2.63 16 10 N -0.29 -5.86 12.49 -56.26 -0.70 -6.56 16 11 N -0.35 -6.37 3.98 -357.41 -1.42 -7.79 16 12 C 0.08 0.70 11.28 127.77 1.44 2.15 16 13 C 0.17 3.61 7.52 84.32 0.63 4.25 16 14 Cl 0.03 0.50 28.14 -2.72 -0.08 0.43 16 15 C 0.11 2.35 5.46 86.36 0.47 2.82 16 16 C -0.12 -3.40 4.90 30.67 0.15 -3.25 16 17 C -0.08 -2.31 1.96 -10.77 -0.02 -2.33 16 18 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 19 C 0.16 6.52 5.18 86.38 0.45 6.96 16 20 N -0.75 -37.63 5.32 -343.46 -1.83 -39.45 16 21 C -0.34 -19.02 9.99 84.03 0.84 -18.18 16 22 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 23 C -0.10 -5.89 5.50 84.86 0.47 -5.42 16 24 N -0.97 -60.20 13.70 21.65 0.30 -59.90 16 25 Si 1.13 51.99 29.92 68.60 2.05 54.04 16 26 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 29 H 0.05 1.40 6.58 -2.39 -0.02 1.38 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.04 1.27 5.97 -2.39 -0.01 1.26 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 2.12 6.99 -2.38 -0.02 2.10 16 34 H 0.22 2.92 7.32 -2.91 -0.02 2.90 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.67 7.77 -2.39 -0.02 0.65 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 1.91 4.75 -2.39 -0.01 1.89 16 40 H 0.06 2.02 7.15 -2.39 -0.02 2.00 16 41 H 0.06 1.73 6.34 -2.39 -0.02 1.71 16 42 H 0.01 0.61 6.74 -2.38 -0.02 0.59 16 43 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.36 18.40 5.68 -92.71 -0.53 17.87 16 45 H 0.25 14.99 6.77 -92.70 -0.63 14.36 16 Total: -1.00 -74.58 369.40 3.79 -70.79 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.64 Total: 25.12 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 6.88 Total: -2.89 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -5.64 Total: -129.42 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.07 Total: -18.07 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -0.08 Total: 0.43 kcal Total: -74.58 3.79 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184661868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.366 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds