Wall clock time and date at job start Sat Apr 11 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.52197 * 2 1 4 4 C 1.53620 * 109.43419 * 120.20809 * 2 1 3 5 5 N 1.46926 * 108.54603 * 174.72654 * 4 2 1 6 6 C 1.34770 * 120.63068 * 126.36984 * 5 4 2 7 7 O 1.21627 * 120.00305 * 4.01028 * 6 5 4 8 8 C 1.47302 * 120.00357 * 184.01255 * 6 5 4 9 9 C 1.41343 * 126.42848 * 310.29220 * 8 6 5 10 10 N 1.30414 * 108.04718 * 180.02562 * 9 8 6 11 11 N 1.39931 * 108.95897 * 0.02562 * 10 9 8 12 12 C 1.46492 * 125.74998 * 179.97438 * 11 10 9 13 13 C 1.34351 * 108.49708 * 359.97438 * 11 10 9 14 14 Cl 1.73600 * 126.31401 * 180.02562 * 13 11 10 15 15 C 1.46925 * 118.73757 * 306.09678 * 5 4 2 16 16 C 1.53194 * 108.77484 * 53.85614 * 15 5 4 17 17 C 1.53034 * 109.49725 * 239.92320 * 2 1 3 18 18 H 1.09000 * 109.46042 * 298.69797 * 17 2 1 19 19 C 1.53000 * 109.46360 * 58.66020 * 17 2 1 20 20 N 1.46500 * 109.47095 * 185.06853 * 19 17 2 21 21 C 1.36935 * 119.99878 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00151 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00172 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99766 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00182 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47166 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46721 * 120.00187 * 25 23 21 28 28 H 1.48493 * 109.47338 * 240.00292 * 25 23 21 29 29 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47751 * 300.07914 * 1 2 3 31 31 H 1.09003 * 109.47460 * 60.08126 * 1 2 3 32 32 H 1.09000 * 109.73984 * 54.98746 * 4 2 1 33 33 H 1.09007 * 109.66516 * 294.42358 * 4 2 1 34 34 H 1.07996 * 125.98040 * 359.76297 * 9 8 6 35 35 H 1.09001 * 109.47186 * 270.02492 * 12 11 10 36 36 H 1.09004 * 109.47175 * 30.02301 * 12 11 10 37 37 H 1.09002 * 109.47204 * 150.02487 * 12 11 10 38 38 H 1.08993 * 109.58574 * 173.64758 * 15 5 4 39 39 H 1.09002 * 109.58477 * 294.07577 * 15 5 4 40 40 H 1.08996 * 109.49638 * 65.32153 * 16 15 5 41 41 H 1.08998 * 109.49607 * 185.37916 * 16 15 5 42 42 H 1.08993 * 109.47096 * 305.07225 * 19 17 2 43 43 H 1.08999 * 109.47028 * 65.07040 * 19 17 2 44 44 H 0.96999 * 119.99970 * 359.97438 * 20 19 17 45 45 H 0.96998 * 119.99937 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0411 -0.7289 1.2519 5 7 3.5046 -0.8291 1.1695 6 6 4.2811 -0.3864 2.1782 7 8 3.7708 0.0344 3.1990 8 6 5.7478 -0.4121 2.0447 9 6 6.5339 -1.5119 1.6321 10 7 7.7842 -1.1412 1.6420 11 7 7.8594 0.1935 2.0557 12 6 9.0887 0.9774 2.1980 13 6 6.6142 0.6347 2.3002 14 17 6.1743 2.2258 2.8376 15 6 4.1053 -1.4265 -0.0308 16 6 3.5708 -0.6948 -1.2660 17 6 2.0407 -0.7230 -1.2483 18 1 1.6967 -1.7572 -1.2353 19 6 1.5036 -0.0231 -2.4984 20 7 1.8917 -0.7839 -3.6887 21 6 1.5208 -0.3460 -4.9321 22 1 0.9419 0.5599 -5.0352 23 6 1.8889 -1.0665 -6.0600 24 7 2.5948 -2.1703 -5.9345 25 14 1.3824 -0.4696 -7.7561 26 1 0.6008 0.7863 -7.6259 27 1 2.5956 -0.2147 -8.5738 28 1 0.5488 -1.5057 -8.4170 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5150 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 1.6085 -1.7283 1.2985 33 1 1.7629 -0.1663 2.1432 34 1 6.1642 -2.4896 1.3605 35 1 9.4767 0.8640 3.2103 36 1 9.8307 0.6228 1.4826 37 1 8.8733 2.0288 2.0071 38 1 5.1895 -1.3244 0.0137 39 1 3.8375 -2.4817 -0.0869 40 1 3.9158 0.3390 -1.2541 41 1 3.9339 -1.1891 -2.1671 42 1 0.4167 0.0357 -2.4431 43 1 1.9193 0.9827 -2.5586 44 1 2.4119 -1.5973 -3.5962 45 1 2.8517 -2.6740 -6.7226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184661871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:07 Heat of formation + Delta-G solvation = 49.128325 kcal Electronic energy + Delta-G solvation = -27755.094627 eV Core-core repulsion = 23835.598460 eV Total energy + Delta-G solvation = -3919.496168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82305 -39.91217 -37.84277 -37.27718 -34.96744 -34.05051 -33.32578 -31.93225 -30.59050 -30.24571 -27.97904 -26.86269 -26.26203 -23.96821 -22.86933 -22.17345 -21.60285 -21.19654 -19.97413 -19.26512 -17.74968 -17.12911 -16.70199 -16.23283 -15.94814 -15.27021 -14.89131 -14.78458 -14.43857 -14.14827 -13.96901 -13.81812 -13.50153 -13.37031 -13.19314 -13.01408 -12.84760 -12.52440 -12.49456 -12.27276 -12.04558 -11.87651 -11.74888 -11.54884 -11.20310 -10.98159 -10.86616 -10.79832 -10.35108 -10.26367 -10.14834 -9.96161 -9.91053 -9.71068 -9.61680 -8.98788 -8.85087 -8.51308 -6.88646 -5.75896 -3.03384 0.97150 1.04688 1.89131 2.14194 2.75224 3.15051 3.43476 3.49497 3.51406 3.98767 4.50448 4.59680 4.61001 4.66580 4.87877 4.89353 4.96561 4.99241 5.02058 5.11789 5.19970 5.36843 5.52693 5.56700 5.60267 5.73908 5.84636 5.88263 5.92714 5.96617 6.03246 6.11127 6.11803 6.27511 6.33723 6.37335 6.51835 6.55535 6.68116 6.86805 6.97085 7.02367 7.41249 7.71947 8.16989 8.43719 9.54919 10.13764 10.48352 11.47200 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.002877 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.386148 B = 9730.770131 C =10768.617814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.072 0.928 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.595 3.405 7 O -0.538 6.538 8 C -0.259 4.259 9 C 0.089 3.911 10 N -0.270 5.270 11 N -0.355 5.355 12 C 0.091 3.909 13 C 0.171 3.829 14 Cl 0.019 6.981 15 C 0.100 3.900 16 C -0.124 4.124 17 C -0.089 4.089 18 H 0.072 0.928 19 C 0.156 3.844 20 N -0.732 5.732 21 C -0.236 4.236 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.201 0.799 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.024 0.976 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.891 4.621 19.998 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.331 5.331 6 C 0.382 3.618 7 O -0.415 6.415 8 C -0.275 4.275 9 C -0.097 4.097 10 N -0.091 5.091 11 N -0.137 5.137 12 C -0.049 4.049 13 C 0.013 3.987 14 Cl 0.047 6.953 15 C -0.022 4.022 16 C -0.163 4.163 17 C -0.108 4.108 18 H 0.091 0.909 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.367 4.367 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.218 0.782 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.042 0.958 43 H 0.033 0.967 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.853 4.826 20.259 23.484 hybrid contribution -0.769 0.437 -0.957 1.303 sum 10.084 5.263 19.302 22.404 Atomic orbital electron populations 1.21831 0.94413 1.02190 1.02018 1.21538 0.96051 0.99905 0.94172 0.90907 1.21807 0.78275 1.00961 0.99149 1.47963 1.06907 1.60381 1.17877 1.17096 0.84527 0.77300 0.82895 1.90780 1.74747 1.47425 1.28540 1.19839 0.94700 0.94397 1.18548 1.24056 0.89287 0.99486 0.96873 1.77364 1.20059 0.90014 1.21683 1.48495 1.04937 1.09716 1.50561 1.22101 0.83487 0.94949 1.04404 1.21911 0.86530 0.89550 1.00664 1.98448 1.91320 1.18027 1.87481 1.22058 0.98535 0.97373 0.84276 1.21915 0.96011 1.01106 0.97226 1.21338 0.94724 1.00188 0.94501 0.90916 1.20755 0.96653 0.94030 0.85670 1.42385 1.65424 1.28937 1.00863 1.19273 1.27454 1.06117 0.83864 0.91271 1.24715 1.01023 0.97576 0.97758 1.69660 1.42937 1.17315 1.28384 0.86143 0.77644 0.77755 0.84830 1.20613 1.21939 1.21912 0.92483 0.92998 0.91368 0.91330 0.89142 0.78196 0.89720 0.88024 0.88929 0.89655 0.90886 0.91916 0.89346 0.95802 0.96650 0.78314 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.82 37.16 0.33 -1.44 16 2 C -0.10 -1.26 2.43 -90.28 -0.22 -1.48 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.49 5.73 -3.49 -0.02 1.47 16 5 N -0.60 -7.64 2.97 -173.82 -0.52 -8.16 16 6 C 0.59 8.33 7.41 -12.58 -0.09 8.23 16 7 O -0.54 -8.95 16.53 5.25 0.09 -8.87 16 8 C -0.26 -3.21 5.13 -105.02 -0.54 -3.75 16 9 C 0.09 0.95 9.64 -16.97 -0.16 0.79 16 10 N -0.27 -3.04 12.49 30.87 0.39 -2.65 16 11 N -0.35 -3.58 3.98 -64.32 -0.26 -3.84 16 12 C 0.09 0.52 11.28 59.84 0.67 1.19 16 13 C 0.17 1.98 7.53 -16.44 -0.12 1.85 16 14 Cl 0.02 0.20 28.56 -51.86 -1.48 -1.28 16 15 C 0.10 1.19 5.89 -3.71 -0.02 1.17 16 16 C -0.12 -1.82 5.25 -26.61 -0.14 -1.96 16 17 C -0.09 -1.36 1.73 -90.58 -0.16 -1.51 16 18 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 19 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 20 N -0.73 -18.01 5.32 -59.91 -0.32 -18.33 16 21 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 25 Si 0.90 22.31 29.55 -169.99 -5.02 17.28 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.89 6.29 -51.93 -0.33 0.56 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.17 7.03 -51.92 -0.36 0.81 16 34 H 0.20 1.56 7.62 -52.49 -0.40 1.16 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.40 7.77 -51.93 -0.40 0.00 16 38 H 0.09 0.94 4.54 -51.93 -0.24 0.70 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.48 7.15 -51.93 -0.37 1.11 16 42 H 0.02 0.47 6.14 -51.93 -0.32 0.16 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.38 9.79 6.85 -40.82 -0.28 9.51 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -33.67 376.49 -7.94 -41.61 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.47 Total: 5.26 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -0.74 Total: 0.37 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.02 Total: -60.06 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.48 Total: -1.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.67 -7.94 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184661871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.737 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds