Wall clock time and date at job start Sat Apr 11 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.50190 * 2 1 4 4 C 1.53201 * 109.49759 * 120.09600 * 2 1 3 5 5 N 1.46924 * 108.77539 * 174.58522 * 4 2 1 6 6 C 1.34769 * 120.62834 * 126.36987 * 5 4 2 7 7 O 1.21577 * 120.00518 * 353.02986 * 6 5 4 8 8 C 1.47713 * 120.00106 * 173.03177 * 6 5 4 9 9 C 1.41501 * 126.51888 * 172.87819 * 8 6 5 10 10 C 1.35514 * 105.48722 * 180.02562 * 9 8 6 11 11 Cl 1.73592 * 126.39994 * 180.02562 * 10 9 8 12 12 N 1.35066 * 107.19697 * 0.02562 * 10 9 8 13 13 C 1.46500 * 124.88288 * 180.02562 * 12 10 9 14 14 N 1.28469 * 110.22907 * 359.72208 * 12 10 9 15 15 C 1.46927 * 118.73634 * 306.38674 * 5 4 2 16 16 C 1.53195 * 108.77440 * 53.61482 * 15 5 4 17 17 C 1.53043 * 109.49511 * 239.92927 * 2 1 3 18 18 H 1.08999 * 109.45790 * 298.70553 * 17 2 1 19 19 C 1.53000 * 109.45873 * 58.66833 * 17 2 1 20 20 N 1.46494 * 109.47190 * 185.06623 * 19 17 2 21 21 C 1.36934 * 120.00241 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00020 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00131 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00209 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00121 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47224 * 60.00121 * 25 23 21 27 27 H 1.48499 * 109.47324 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47213 * 299.99978 * 25 23 21 29 29 H 1.09003 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46840 * 300.06741 * 1 2 3 31 31 H 1.08999 * 109.47383 * 60.06822 * 1 2 3 32 32 H 1.09005 * 109.58288 * 294.37110 * 4 2 1 33 33 H 1.08997 * 109.58363 * 54.65321 * 4 2 1 34 34 H 1.07999 * 127.25148 * 0.02731 * 9 8 6 35 35 H 1.08993 * 109.47396 * 89.99945 * 13 12 10 36 36 H 1.09000 * 109.46855 * 209.99805 * 13 12 10 37 37 H 1.08996 * 109.46834 * 329.99444 * 13 12 10 38 38 H 1.08993 * 109.58942 * 293.82066 * 15 5 4 39 39 H 1.09001 * 109.58134 * 173.39315 * 15 5 4 40 40 H 1.09000 * 109.50002 * 65.31399 * 16 15 5 41 41 H 1.09003 * 109.49584 * 185.37676 * 16 15 5 42 42 H 1.09002 * 109.46919 * 305.06603 * 19 17 2 43 43 H 1.08994 * 109.47462 * 65.06453 * 19 17 2 44 44 H 0.97005 * 119.99781 * 0.02562 * 20 19 17 45 45 H 0.97003 * 120.00010 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7242 1.2495 5 7 3.5046 -0.8295 1.1694 6 6 4.2811 -0.3863 2.1778 7 8 3.7836 0.2196 3.1071 8 6 5.7367 -0.6364 2.1541 9 6 6.6949 -0.1186 3.0573 10 6 7.8865 -0.6148 2.6445 11 17 9.4336 -0.3202 3.3746 12 7 7.6453 -1.3815 1.5590 13 6 8.6682 -2.1070 0.8017 14 7 6.3891 -1.3880 1.2900 15 6 4.1052 -1.4269 -0.0311 16 6 3.5708 -0.6948 -1.2661 17 6 2.0407 -0.7229 -1.2485 18 1 1.6966 -1.7570 -1.2356 19 6 1.5037 -0.0227 -2.4984 20 7 1.8916 -0.7831 -3.6889 21 6 1.5200 -0.3456 -4.9321 22 1 0.9412 0.5604 -5.0350 23 6 1.8871 -1.0665 -6.0600 24 7 2.5929 -2.1704 -5.9347 25 14 1.3807 -0.4692 -7.7560 26 1 1.9471 0.8828 -7.9942 27 1 1.8938 -1.4086 -8.7853 28 1 -0.1007 -0.4065 -7.8368 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3634 0.5128 -0.8906 32 1 1.7638 -0.1584 2.1389 33 1 1.6032 -1.7210 1.2990 34 1 6.5146 0.5344 3.8984 35 1 8.7909 -3.1055 1.2211 36 1 8.3604 -2.1862 -0.2409 37 1 9.6143 -1.5690 0.8614 38 1 3.8375 -2.4819 -0.0873 39 1 5.1895 -1.3247 0.0135 40 1 3.9159 0.3390 -1.2540 41 1 3.9339 -1.1890 -2.1674 42 1 0.4167 0.0362 -2.4431 43 1 1.9194 0.9831 -2.5584 44 1 2.4112 -1.5971 -3.5964 45 1 2.8498 -2.6739 -6.7230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184778942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:19 Heat of formation + Delta-G solvation = 58.896803 kcal Electronic energy + Delta-G solvation = -27588.126001 eV Core-core repulsion = 23669.053427 eV Total energy + Delta-G solvation = -3919.072575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.11317 -40.04023 -37.91096 -37.33785 -34.97862 -34.06367 -33.38668 -31.91371 -30.91242 -30.26163 -28.30719 -26.82327 -26.37756 -24.00669 -22.96630 -22.40887 -21.70176 -21.19624 -20.03360 -19.29046 -17.71688 -17.18422 -16.90767 -16.76703 -15.93214 -15.18246 -14.79317 -14.68417 -14.49606 -14.34168 -13.94325 -13.80657 -13.48735 -13.47156 -13.14507 -13.12140 -12.90499 -12.63966 -12.52708 -12.41867 -12.03239 -11.83290 -11.70429 -11.53501 -11.03471 -10.95905 -10.80355 -10.76684 -10.35788 -10.27111 -10.13445 -10.00821 -9.76480 -9.59360 -9.53259 -9.33184 -8.82982 -8.51948 -6.87555 -5.74687 -3.02166 1.06690 1.17404 1.59236 2.10640 2.99407 3.23699 3.44956 3.49240 3.50207 3.88108 4.42080 4.60644 4.63497 4.76569 4.87438 4.95091 4.99508 5.04529 5.10278 5.22599 5.28111 5.46393 5.55901 5.59674 5.68175 5.76155 5.86267 5.88057 5.94894 5.98369 6.04060 6.12451 6.24073 6.31037 6.36664 6.44228 6.56040 6.60080 6.71857 6.89531 6.99826 7.30442 7.48736 7.71761 8.10433 8.44980 9.55888 10.15131 10.49842 11.48324 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013087 B = 0.002686 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.977714 B =10423.003878 C =12172.775542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.603 3.397 7 O -0.537 6.537 8 C 0.000 4.000 9 C -0.152 4.152 10 C 0.050 3.950 11 Cl 0.002 6.998 12 N -0.276 5.276 13 C 0.077 3.923 14 N -0.232 5.232 15 C 0.087 3.913 16 C -0.124 4.124 17 C -0.089 4.089 18 H 0.072 0.928 19 C 0.156 3.844 20 N -0.731 5.731 21 C -0.236 4.236 22 H 0.068 0.932 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.173 0.827 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.024 0.976 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.529 0.253 19.890 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.389 3.611 7 O -0.413 6.413 8 C -0.159 4.159 9 C -0.181 4.181 10 C -0.101 4.101 11 Cl 0.030 6.970 12 N -0.065 5.065 13 C -0.063 4.063 14 N -0.069 5.069 15 C -0.035 4.035 16 C -0.162 4.162 17 C -0.108 4.108 18 H 0.090 0.910 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.367 4.367 22 H 0.086 0.914 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.191 0.809 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.042 0.958 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.288 -0.055 19.314 22.892 hybrid contribution 0.366 0.422 -0.444 0.713 sum 12.654 0.367 18.870 22.724 Atomic orbital electron populations 1.21832 0.94374 1.02169 1.02053 1.21457 0.96081 0.99981 0.94147 0.90837 1.21763 0.78195 1.01027 0.99407 1.47964 1.06942 1.59530 1.17964 1.16850 0.83119 0.78779 0.82386 1.90779 1.73568 1.41302 1.35678 1.21838 0.95262 1.02153 0.96667 1.21430 0.88294 1.05162 1.03174 1.21936 0.90175 1.03570 0.94395 1.98406 1.24169 1.94595 1.79858 1.45749 1.05923 1.34376 1.20492 1.22357 0.88666 0.97151 0.98083 1.73727 0.89718 1.20783 1.22699 1.22534 1.00781 0.96953 0.83262 1.21928 0.95829 1.01001 0.97421 1.21353 0.94925 1.00104 0.94447 0.91002 1.20758 0.96626 0.94042 0.85684 1.42373 1.65449 1.28914 1.00844 1.19190 1.27545 1.06103 0.83904 0.91369 1.24713 1.01043 0.97574 0.97751 1.69647 1.42900 1.17294 1.28578 0.86281 0.78056 0.77614 0.84319 1.21360 1.21740 1.21326 0.92513 0.92962 0.91331 0.89083 0.91246 0.80936 0.88996 0.87377 0.88409 0.91399 0.86406 0.92074 0.89419 0.95823 0.96624 0.78316 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.82 37.16 0.33 -1.50 16 2 C -0.10 -1.33 2.42 -90.49 -0.22 -1.55 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.12 1.55 5.73 -3.71 -0.02 1.53 16 5 N -0.59 -8.27 2.97 -173.92 -0.52 -8.79 16 6 C 0.60 8.96 7.69 -12.39 -0.10 8.87 16 7 O -0.54 -9.12 16.36 5.30 0.09 -9.04 16 8 C 0.00 0.00 6.82 -82.77 -0.56 -0.57 16 9 C -0.15 -1.71 10.80 -39.31 -0.42 -2.13 16 10 C 0.05 0.47 7.44 -17.10 -0.13 0.35 16 11 Cl 0.00 0.01 28.67 -51.86 -1.49 -1.47 16 12 N -0.28 -2.62 3.70 -64.88 -0.24 -2.86 16 13 C 0.08 0.41 11.14 59.85 0.67 1.08 16 14 N -0.23 -2.77 8.47 33.42 0.28 -2.49 16 15 C 0.09 1.19 6.11 -3.71 -0.02 1.17 16 16 C -0.12 -1.93 5.25 -26.61 -0.14 -2.07 16 17 C -0.09 -1.44 1.73 -90.58 -0.16 -1.59 16 18 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 19 C 0.16 3.13 5.41 -4.05 -0.02 3.11 16 20 N -0.73 -18.32 5.32 -59.92 -0.32 -18.63 16 21 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.94 -28.02 13.06 55.49 0.72 -27.29 16 25 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.92 6.29 -51.93 -0.33 0.59 16 32 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.35 7.71 -51.93 -0.40 -0.05 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.12 1.57 4.19 -67.75 -0.28 1.28 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.55 7.15 -51.93 -0.37 1.17 16 42 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 9.97 6.85 -40.82 -0.28 9.69 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -33.00 375.20 -8.42 -41.42 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.54 Total: 6.69 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.04 Total: -0.61 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.07 Total: -60.06 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.49 Total: -1.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.00 -8.42 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184778942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.318 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds