Wall clock time and date at job start Sat Apr 11 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.50190 * 2 1 4 4 C 1.53201 * 109.49759 * 120.09600 * 2 1 3 5 5 N 1.46924 * 108.77539 * 174.58522 * 4 2 1 6 6 C 1.34769 * 120.62834 * 126.36987 * 5 4 2 7 7 O 1.21577 * 120.00518 * 353.02986 * 6 5 4 8 8 C 1.47713 * 120.00106 * 173.03177 * 6 5 4 9 9 C 1.41501 * 126.51888 * 172.87819 * 8 6 5 10 10 C 1.35514 * 105.48722 * 180.02562 * 9 8 6 11 11 Cl 1.73592 * 126.39994 * 180.02562 * 10 9 8 12 12 N 1.35066 * 107.19697 * 0.02562 * 10 9 8 13 13 C 1.46500 * 124.88288 * 180.02562 * 12 10 9 14 14 N 1.28469 * 110.22907 * 359.72208 * 12 10 9 15 15 C 1.46927 * 118.73634 * 306.38674 * 5 4 2 16 16 C 1.53195 * 108.77440 * 53.61482 * 15 5 4 17 17 C 1.53043 * 109.49511 * 239.92927 * 2 1 3 18 18 H 1.08999 * 109.45790 * 298.70553 * 17 2 1 19 19 C 1.53000 * 109.45873 * 58.66833 * 17 2 1 20 20 N 1.46494 * 109.47190 * 185.06623 * 19 17 2 21 21 C 1.36934 * 120.00241 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00020 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00131 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00209 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00121 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47224 * 60.00121 * 25 23 21 27 27 H 1.48499 * 109.47324 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47213 * 299.99978 * 25 23 21 29 29 H 1.09003 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46840 * 300.06741 * 1 2 3 31 31 H 1.08999 * 109.47383 * 60.06822 * 1 2 3 32 32 H 1.09005 * 109.58288 * 294.37110 * 4 2 1 33 33 H 1.08997 * 109.58363 * 54.65321 * 4 2 1 34 34 H 1.07999 * 127.25148 * 0.02731 * 9 8 6 35 35 H 1.08993 * 109.47396 * 89.99945 * 13 12 10 36 36 H 1.09000 * 109.46855 * 209.99805 * 13 12 10 37 37 H 1.08996 * 109.46834 * 329.99444 * 13 12 10 38 38 H 1.08993 * 109.58942 * 293.82066 * 15 5 4 39 39 H 1.09001 * 109.58134 * 173.39315 * 15 5 4 40 40 H 1.09000 * 109.50002 * 65.31399 * 16 15 5 41 41 H 1.09003 * 109.49584 * 185.37676 * 16 15 5 42 42 H 1.09002 * 109.46919 * 305.06603 * 19 17 2 43 43 H 1.08994 * 109.47462 * 65.06453 * 19 17 2 44 44 H 0.97005 * 119.99781 * 0.02562 * 20 19 17 45 45 H 0.97003 * 120.00010 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7242 1.2495 5 7 3.5046 -0.8295 1.1694 6 6 4.2811 -0.3863 2.1778 7 8 3.7836 0.2196 3.1071 8 6 5.7367 -0.6364 2.1541 9 6 6.6949 -0.1186 3.0573 10 6 7.8865 -0.6148 2.6445 11 17 9.4336 -0.3202 3.3746 12 7 7.6453 -1.3815 1.5590 13 6 8.6682 -2.1070 0.8017 14 7 6.3891 -1.3880 1.2900 15 6 4.1052 -1.4269 -0.0311 16 6 3.5708 -0.6948 -1.2661 17 6 2.0407 -0.7229 -1.2485 18 1 1.6966 -1.7570 -1.2356 19 6 1.5037 -0.0227 -2.4984 20 7 1.8916 -0.7831 -3.6889 21 6 1.5200 -0.3456 -4.9321 22 1 0.9412 0.5604 -5.0350 23 6 1.8871 -1.0665 -6.0600 24 7 2.5929 -2.1704 -5.9347 25 14 1.3807 -0.4692 -7.7560 26 1 1.9471 0.8828 -7.9942 27 1 1.8938 -1.4086 -8.7853 28 1 -0.1007 -0.4065 -7.8368 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3634 0.5128 -0.8906 32 1 1.7638 -0.1584 2.1389 33 1 1.6032 -1.7210 1.2990 34 1 6.5146 0.5344 3.8984 35 1 8.7909 -3.1055 1.2211 36 1 8.3604 -2.1862 -0.2409 37 1 9.6143 -1.5690 0.8614 38 1 3.8375 -2.4819 -0.0873 39 1 5.1895 -1.3247 0.0135 40 1 3.9159 0.3390 -1.2540 41 1 3.9339 -1.1890 -2.1674 42 1 0.4167 0.0362 -2.4431 43 1 1.9194 0.9831 -2.5584 44 1 2.4112 -1.5971 -3.5964 45 1 2.8498 -2.6739 -6.7230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184778942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:19 Heat of formation + Delta-G solvation = 38.678232 kcal Electronic energy + Delta-G solvation = -27589.002745 eV Core-core repulsion = 23669.053427 eV Total energy + Delta-G solvation = -3919.949318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.93150 -41.19372 -39.17821 -38.00634 -36.57803 -35.19606 -34.49009 -33.41716 -32.01067 -31.73863 -29.14357 -28.33394 -27.33424 -25.64603 -24.32448 -23.47633 -22.66437 -22.50262 -21.18716 -20.41902 -19.12518 -18.60621 -17.88594 -17.63834 -17.04596 -16.69709 -16.24025 -15.76326 -15.60763 -15.51364 -15.21558 -15.14954 -14.93931 -14.49791 -14.27197 -14.07505 -13.97150 -13.80428 -13.55179 -13.17797 -13.11070 -12.99386 -12.92455 -12.83822 -12.70195 -12.52141 -12.22837 -12.00842 -11.93234 -11.87026 -11.62543 -11.46987 -11.16957 -11.01173 -10.80465 -10.36605 -10.13659 -9.66850 -8.94755 -7.92866 -5.20486 0.27442 0.35024 0.73506 1.41195 1.47845 1.50408 1.56468 1.97635 2.18121 2.57482 3.03802 3.40179 3.56045 3.71027 3.81304 3.88739 4.03304 4.07919 4.25047 4.28004 4.30153 4.31285 4.36527 4.52087 4.54897 4.60773 4.64975 4.70734 4.78701 4.82565 4.88060 5.00067 5.08034 5.12592 5.13396 5.22604 5.28175 5.35745 5.44372 5.49594 5.56024 5.65529 6.24122 6.29920 6.57094 7.00088 7.36411 8.13032 8.37539 9.30356 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013087 B = 0.002686 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.977714 B =10423.003878 C =12172.775542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.064 0.936 4 C 0.120 3.880 5 N -0.594 5.594 6 C 0.601 3.399 7 O -0.565 6.565 8 C -0.027 4.027 9 C -0.164 4.164 10 C 0.055 3.945 11 Cl 0.027 6.973 12 N -0.268 5.268 13 C 0.065 3.935 14 N -0.242 5.242 15 C 0.098 3.902 16 C -0.116 4.116 17 C -0.079 4.079 18 H 0.070 0.930 19 C 0.157 3.843 20 N -0.741 5.741 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.971 3.029 26 H -0.280 1.280 27 H -0.294 1.294 28 H -0.279 1.279 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.178 0.822 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.028 0.972 43 H 0.008 0.992 44 H 0.375 0.625 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.243 0.230 20.492 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.324 5.324 6 C 0.388 3.612 7 O -0.443 6.443 8 C -0.184 4.184 9 C -0.193 4.193 10 C -0.096 4.096 11 Cl 0.055 6.945 12 N -0.058 5.058 13 C -0.073 4.073 14 N -0.081 5.081 15 C -0.024 4.024 16 C -0.154 4.154 17 C -0.098 4.098 18 H 0.088 0.912 19 C 0.031 3.969 20 N -0.384 5.384 21 C -0.377 4.377 22 H 0.089 0.911 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.800 3.200 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.205 1.205 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.196 0.804 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.026 0.974 44 H 0.208 0.792 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.989 -0.059 19.929 23.788 hybrid contribution 0.252 0.446 -0.586 0.778 sum 13.242 0.386 19.343 23.444 Atomic orbital electron populations 1.21798 0.93079 1.02723 1.02456 1.21358 0.97087 0.99136 0.93133 0.91703 1.21799 0.77883 1.01748 0.98779 1.48020 1.07304 1.59284 1.17821 1.17095 0.83937 0.78160 0.82006 1.90749 1.74329 1.42584 1.36640 1.21678 0.94715 1.03856 0.98166 1.21578 0.88653 1.05697 1.03403 1.21977 0.90843 1.02671 0.94084 1.98418 1.22259 1.94420 1.79416 1.46115 1.05733 1.33656 1.20319 1.22779 0.88335 0.98114 0.98105 1.73592 0.90849 1.20876 1.22757 1.22432 1.01125 0.96827 0.82063 1.21798 0.95584 1.00414 0.97621 1.21239 0.95055 0.99737 0.93740 0.91182 1.20879 0.96829 0.93473 0.85724 1.42546 1.65311 1.29027 1.01558 1.19567 1.26911 1.05985 0.85256 0.91112 1.25502 1.01685 0.98010 1.01346 1.69796 1.44295 1.18474 1.29195 0.85257 0.77898 0.77106 0.79769 1.20648 1.22002 1.20507 0.91890 0.90974 0.92487 0.89006 0.89757 0.80411 0.87024 0.86899 0.86364 0.90643 0.85794 0.93030 0.91612 0.95371 0.97367 0.79210 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.82 71.98 0.63 -2.72 16 2 C -0.09 -2.33 2.42 -10.71 -0.03 -2.35 16 3 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.12 3.01 5.73 86.37 0.49 3.50 16 5 N -0.59 -16.29 2.97 -822.45 -2.44 -18.74 16 6 C 0.60 17.80 7.69 86.75 0.67 18.47 16 7 O -0.56 -19.24 16.36 -3.96 -0.06 -19.30 16 8 C -0.03 -0.70 6.82 42.46 0.29 -0.41 16 9 C -0.16 -3.60 10.80 22.44 0.24 -3.36 16 10 C 0.06 0.98 7.44 83.57 0.62 1.60 16 11 Cl 0.03 0.33 28.67 -2.72 -0.08 0.25 16 12 N -0.27 -4.67 3.70 -359.18 -1.33 -6.00 16 13 C 0.06 0.54 11.14 127.77 1.42 1.96 16 14 N -0.24 -5.57 8.47 -48.18 -0.41 -5.98 16 15 C 0.10 2.64 6.11 86.36 0.53 3.16 16 16 C -0.12 -3.67 5.25 30.67 0.16 -3.51 16 17 C -0.08 -2.52 1.73 -10.76 -0.02 -2.54 16 18 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 19 C 0.16 6.33 5.41 86.38 0.47 6.80 16 20 N -0.74 -37.60 5.32 -343.47 -1.83 -39.43 16 21 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 22 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 23 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 24 N -0.97 -58.55 13.06 21.65 0.28 -58.26 16 25 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.06 1.47 6.29 -2.39 -0.02 1.46 16 32 H 0.09 2.35 7.00 -2.38 -0.02 2.34 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 0.51 7.71 -2.39 -0.02 0.49 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.13 3.26 4.19 -22.85 -0.10 3.16 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.39 7.15 -2.39 -0.02 2.37 16 42 H 0.03 1.13 6.14 -2.39 -0.01 1.12 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.38 19.96 6.85 -92.70 -0.64 19.33 16 45 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -70.50 375.20 3.25 -67.26 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.30 Total: 28.10 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 6.79 Total: 3.94 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -5.72 Total: -128.41 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.06 Total: -19.30 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.08 Total: 0.25 kcal Total: -70.50 3.25 -67.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184778942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.934 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds