Wall clock time and date at job start Sat Apr 11 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.52442 * 2 1 4 4 C 1.53192 * 109.49494 * 120.08197 * 2 1 3 5 5 N 1.46931 * 108.77669 * 65.31815 * 4 2 1 6 6 C 1.34774 * 120.62805 * 233.62918 * 5 4 2 7 7 O 1.21695 * 119.99936 * 0.84389 * 6 5 4 8 8 C 1.46661 * 120.00017 * 180.84837 * 6 5 4 9 9 C 1.36678 * 126.84064 * 25.74693 * 8 6 5 10 10 N 1.33301 * 107.82878 * 179.83363 * 9 8 6 11 11 C 1.31017 * 109.70404 * 0.44177 * 10 9 8 12 12 Cl 1.73604 * 125.43539 * 179.68436 * 11 10 9 13 13 N 1.34601 * 109.13375 * 359.72136 * 11 10 9 14 14 C 1.46497 * 126.49395 * 179.97438 * 13 11 10 15 15 C 1.46923 * 118.74010 * 53.60326 * 5 4 2 16 16 C 1.53195 * 108.77572 * 306.39559 * 15 5 4 17 17 C 1.53036 * 109.49440 * 239.91894 * 2 1 3 18 18 H 1.09007 * 109.45588 * 181.39363 * 17 2 1 19 19 C 1.52996 * 109.46331 * 61.42403 * 17 2 1 20 20 N 1.46496 * 109.47562 * 174.96853 * 19 17 2 21 21 C 1.36937 * 120.00298 * 179.97438 * 20 19 17 22 22 H 1.08010 * 119.99700 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00100 * 180.02562 * 21 20 19 24 24 N 1.31613 * 120.00442 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00031 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47151 * 59.99871 * 25 23 21 27 27 H 1.48500 * 109.47395 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47265 * 300.00495 * 25 23 21 29 29 H 1.09000 * 109.47496 * 180.08535 * 1 2 3 30 30 H 1.09002 * 109.46753 * 300.07677 * 1 2 3 31 31 H 1.08996 * 109.46807 * 60.07739 * 1 2 3 32 32 H 1.09008 * 109.58607 * 185.10273 * 4 2 1 33 33 H 1.08999 * 109.59206 * 305.38479 * 4 2 1 34 34 H 1.07997 * 126.08517 * 359.97438 * 9 8 6 35 35 H 1.09003 * 109.47329 * 264.52248 * 14 13 11 36 36 H 1.09004 * 109.47178 * 24.52701 * 14 13 11 37 37 H 1.09006 * 109.46697 * 144.52591 * 14 13 11 38 38 H 1.09000 * 109.58519 * 66.17954 * 15 5 4 39 39 H 1.09001 * 109.58865 * 186.60664 * 15 5 4 40 40 H 1.09000 * 109.49682 * 294.68182 * 16 15 5 41 41 H 1.08997 * 109.49504 * 174.58767 * 16 15 5 42 42 H 1.09006 * 109.46844 * 294.97301 * 19 17 2 43 43 H 1.09000 * 109.46894 * 54.96486 * 19 17 2 44 44 H 0.97000 * 119.99780 * 0.02562 * 20 19 17 45 45 H 0.96997 * 120.00717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6515 -2.1382 1.1695 6 6 0.9739 -2.7219 2.1779 7 8 0.6658 -2.0726 3.1599 8 6 0.6080 -4.1395 2.0916 9 6 1.2443 -5.1074 1.3662 10 7 0.5983 -6.2565 1.5638 11 6 -0.4168 -6.0599 2.3683 12 17 -1.5369 -7.2785 2.8920 13 7 -0.4533 -4.7621 2.7236 14 6 -1.4320 -4.1288 3.6107 15 6 2.0139 -2.9041 -0.0308 16 6 1.5029 -2.1558 -1.2660 17 6 2.0407 -0.7231 -1.2483 18 1 3.1305 -0.7444 -1.2353 19 6 1.5604 0.0168 -2.4984 20 7 2.1469 -0.6036 -3.6888 21 6 1.8579 -0.1081 -4.9322 22 1 1.1977 0.7406 -5.0352 23 6 2.4133 -0.6963 -6.0601 24 7 3.2173 -1.7307 -5.9347 25 14 2.0195 -0.0198 -7.7562 26 1 2.4573 1.3969 -7.8380 27 1 2.7328 -0.8180 -8.7855 28 1 0.5558 -0.0999 -7.9936 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 3.1275 -0.6463 1.2981 33 1 1.6027 -0.2716 2.1391 34 1 2.1168 -4.9668 0.7453 35 1 -2.2275 -3.6819 3.0143 36 1 -1.8561 -4.8789 4.2784 37 1 -0.9407 -3.3542 4.1997 38 1 3.0978 -3.0043 -0.0868 39 1 1.5553 -3.8919 0.0137 40 1 0.4132 -2.1354 -1.2541 41 1 1.8479 -2.6628 -2.1671 42 1 0.4734 -0.0383 -2.5580 43 1 1.8687 1.0609 -2.4435 44 1 2.7395 -1.3660 -3.5963 45 1 3.6057 -2.1416 -6.7229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184810349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:31 Heat of formation + Delta-G solvation = 50.447613 kcal Electronic energy + Delta-G solvation = -28014.480827 eV Core-core repulsion = 24095.041867 eV Total energy + Delta-G solvation = -3919.438959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.72974 -40.28317 -38.09825 -37.40749 -35.28460 -34.48143 -33.54474 -31.95894 -30.38280 -30.20797 -27.64218 -27.05997 -26.75900 -24.17332 -23.27453 -22.84808 -21.94967 -21.23659 -20.01179 -18.61231 -17.76884 -17.28155 -16.88021 -16.56274 -16.19438 -15.41765 -15.28427 -14.93702 -14.50294 -14.29031 -14.11140 -13.90137 -13.67645 -13.58775 -13.47167 -13.18563 -12.93905 -12.56074 -12.37925 -12.23773 -12.09860 -11.96376 -11.64372 -11.39232 -11.05316 -10.94998 -10.81899 -10.76119 -10.39875 -10.28705 -10.23774 -10.21766 -10.04035 -9.88845 -9.64712 -8.95019 -8.85724 -8.66154 -6.91332 -5.76975 -3.05034 0.79059 0.87781 2.17350 2.30969 2.85832 2.97288 3.43783 3.48462 3.49227 4.07872 4.28393 4.43908 4.58133 4.76057 4.77695 4.85488 4.89276 4.95356 5.07614 5.12722 5.20430 5.41191 5.48005 5.54527 5.59454 5.64727 5.72868 5.79527 5.81199 5.95207 6.02466 6.05836 6.14185 6.25513 6.26049 6.33280 6.40799 6.44540 6.63165 6.78971 6.91913 7.15763 7.27602 7.69378 7.86227 8.42469 9.53576 10.11664 10.46177 11.45886 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002684 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.331724 B =10429.187029 C =11603.051246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.120 3.880 5 N -0.585 5.585 6 C 0.595 3.405 7 O -0.548 6.548 8 C -0.061 4.061 9 C 0.036 3.964 10 N -0.465 5.465 11 C 0.258 3.742 12 Cl 0.041 6.959 13 N -0.414 5.414 14 C 0.059 3.941 15 C 0.072 3.928 16 C -0.126 4.126 17 C -0.090 4.090 18 H 0.073 0.927 19 C 0.159 3.841 20 N -0.731 5.731 21 C -0.239 4.239 22 H 0.068 0.932 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.205 0.795 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.383 0.617 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.227 -6.050 21.821 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.002 4.002 5 N -0.316 5.316 6 C 0.383 3.617 7 O -0.427 6.427 8 C -0.178 4.178 9 C -0.117 4.117 10 N -0.186 5.186 11 C -0.028 4.028 12 Cl 0.069 6.931 13 N -0.098 5.098 14 C -0.082 4.082 15 C -0.049 4.049 16 C -0.164 4.164 17 C -0.108 4.108 18 H 0.091 0.909 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.370 4.370 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.221 0.779 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.486 -6.379 22.027 24.123 hybrid contribution -0.397 0.666 -0.671 1.025 sum -7.883 -5.713 21.356 23.470 Atomic orbital electron populations 1.21861 0.94953 1.01867 1.01528 1.21481 0.96634 0.99568 0.94096 0.89771 1.21767 0.99757 0.79152 0.99512 1.47756 1.54748 1.11811 1.17279 1.16608 0.78266 0.83794 0.83059 1.90782 1.55936 1.64526 1.31466 1.20785 0.95678 0.95682 1.05669 1.23205 1.01668 0.86681 1.00126 1.70127 1.05383 1.27517 1.15535 1.23247 0.96865 0.81687 1.01019 1.98433 1.56820 1.49371 1.88493 1.45018 1.22501 1.06985 1.35283 1.22420 0.91657 1.00199 0.93954 1.22770 1.01228 0.96740 0.84203 1.21962 1.01382 0.95973 0.97086 1.21324 1.00362 0.94686 0.94471 0.90859 1.20703 0.95882 0.94637 0.85670 1.42363 1.56836 1.37584 1.00814 1.19170 1.23140 1.10874 0.83863 0.91391 1.24710 1.00073 0.98353 0.97765 1.69628 1.35615 1.24300 1.28702 0.86290 0.77646 0.78057 0.84323 1.21332 1.21684 1.21322 0.92763 0.93352 0.91838 0.90971 0.88952 0.77912 0.89554 0.88938 0.87112 0.90283 0.87634 0.91402 0.89106 0.96163 0.96518 0.78277 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.38 37.16 0.31 -1.47 16 2 C -0.10 -1.17 2.72 -90.50 -0.25 -1.42 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.32 5.82 -3.71 -0.02 1.30 16 5 N -0.58 -6.68 2.41 -174.31 -0.42 -7.10 16 6 C 0.60 7.48 7.57 -12.86 -0.10 7.39 16 7 O -0.55 -7.93 14.70 5.19 0.08 -7.86 16 8 C -0.06 -0.72 6.54 -82.10 -0.54 -1.26 16 9 C 0.04 0.42 9.59 -17.48 -0.17 0.25 16 10 N -0.46 -5.92 11.21 -11.49 -0.13 -6.05 16 11 C 0.26 2.91 8.48 -90.34 -0.77 2.15 16 12 Cl 0.04 0.36 28.63 -51.86 -1.48 -1.13 16 13 N -0.41 -4.47 3.18 -118.36 -0.38 -4.85 16 14 C 0.06 0.46 10.73 59.85 0.64 1.10 16 15 C 0.07 0.79 5.40 -3.71 -0.02 0.77 16 16 C -0.13 -1.73 4.90 -26.61 -0.13 -1.86 16 17 C -0.09 -1.29 1.96 -90.58 -0.18 -1.47 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 19 C 0.16 3.00 5.18 -4.05 -0.02 2.98 16 20 N -0.73 -17.73 5.32 -59.91 -0.32 -18.05 16 21 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 22 H 0.07 1.83 7.83 -52.48 -0.41 1.41 16 23 C -0.01 -0.37 5.50 -17.44 -0.10 -0.47 16 24 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 25 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 29 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 32 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.09 1.06 7.01 -51.93 -0.36 0.70 16 34 H 0.20 1.85 5.76 -52.49 -0.30 1.55 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.50 7.62 -51.93 -0.40 0.11 16 37 H 0.11 0.97 6.63 -51.93 -0.34 0.62 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.11 1.08 3.40 -51.93 -0.18 0.90 16 40 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 41 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 42 H 0.02 0.40 6.74 -51.93 -0.35 0.05 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 9.63 6.84 -40.82 -0.28 9.35 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -32.45 365.33 -8.99 -41.44 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.07 Total: 6.55 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.48 Total: 1.26 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.52 Total: -62.96 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.08 Total: -7.86 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.48 Total: -1.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.45 -8.99 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184810349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.893 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds