Wall clock time and date at job start Sat Apr 11 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.52091 * 2 1 4 4 C 1.53198 * 109.49660 * 239.92582 * 2 1 3 5 5 N 1.46929 * 108.77249 * 185.41023 * 4 2 1 6 6 C 1.34783 * 120.62828 * 233.62503 * 5 4 2 7 7 O 1.21280 * 119.99762 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99921 * 179.97438 * 6 5 4 9 9 N 1.46491 * 109.47119 * 180.02562 * 8 6 5 10 10 C 1.35054 * 126.03660 * 125.00615 * 9 8 6 11 11 C 1.35375 * 107.72893 * 180.02562 * 10 9 8 12 12 Cl 1.73602 * 126.04717 * 180.02562 * 11 10 9 13 13 C 1.39935 * 107.90656 * 359.97438 * 11 10 9 14 14 N 1.30846 * 108.21341 * 359.72283 * 13 11 10 15 15 C 1.46926 * 118.73979 * 53.60785 * 5 4 2 16 16 C 1.53188 * 108.77678 * 306.39067 * 15 5 4 17 17 C 1.53038 * 109.50075 * 120.08395 * 2 1 3 18 18 H 1.08998 * 109.44897 * 61.30596 * 17 2 1 19 19 C 1.52993 * 109.46250 * 301.33682 * 17 2 1 20 20 N 1.46496 * 109.47551 * 174.92961 * 19 17 2 21 21 C 1.36934 * 120.00548 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99288 * 0.02562 * 21 20 19 23 23 C 1.38805 * 120.00389 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00257 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 H 1.08997 * 109.46989 * 299.91320 * 1 2 3 30 30 H 1.08997 * 109.47452 * 59.91654 * 1 2 3 31 31 H 1.08997 * 109.46607 * 179.91813 * 1 2 3 32 32 H 1.09003 * 109.58698 * 65.62118 * 4 2 1 33 33 H 1.08994 * 109.58665 * 305.19625 * 4 2 1 34 34 H 1.08997 * 109.47673 * 300.00797 * 8 6 5 35 35 H 1.09004 * 109.47087 * 60.00384 * 8 6 5 36 36 H 1.07996 * 126.13487 * 0.02562 * 10 9 8 37 37 H 1.08004 * 125.89029 * 179.97438 * 13 11 10 38 38 H 1.09003 * 109.58229 * 186.59809 * 15 5 4 39 39 H 1.08998 * 109.58394 * 66.17879 * 15 5 4 40 40 H 1.09007 * 109.49448 * 294.68142 * 16 15 5 41 41 H 1.08992 * 109.49611 * 174.58857 * 16 15 5 42 42 H 1.09004 * 109.46862 * 54.93160 * 19 17 2 43 43 H 1.09004 * 109.46998 * 294.93638 * 19 17 2 44 44 H 0.96999 * 119.99694 * 0.02562 * 20 19 17 45 45 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2497 5 7 3.5047 -0.8289 -1.1697 6 6 4.2812 -0.3853 -2.1781 7 8 3.7731 0.1059 -3.1637 8 6 5.7806 -0.4998 -2.0809 9 7 6.3919 0.0492 -3.2937 10 6 7.3289 1.0206 -3.3415 11 6 7.6290 1.2402 -4.6431 12 17 8.7789 2.3927 -5.2460 13 6 6.8493 0.3732 -5.4167 14 7 6.1124 -0.3452 -4.6086 15 6 4.1054 -1.4266 0.0306 16 6 3.5710 -0.6950 1.2659 17 6 2.0409 -0.7231 1.2483 18 1 1.6969 -1.7573 1.2349 19 6 1.5039 -0.0234 2.4983 20 7 1.8919 -0.7842 3.6886 21 6 1.5212 -0.3465 4.9320 22 1 0.9423 0.5594 5.0351 23 6 1.8893 -1.0671 6.0598 24 7 1.5325 -0.6467 7.2550 25 14 2.8899 -2.6344 5.8814 26 1 1.9728 -3.7943 5.7442 27 1 3.7499 -2.5379 4.6746 28 1 3.7424 -2.8170 7.0835 29 1 -0.3633 0.5125 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3632 -1.0277 -0.0015 32 1 1.7637 -0.1577 -2.1390 33 1 1.6053 -1.7215 -1.2982 34 1 6.1321 0.0579 -1.2129 35 1 6.0589 -1.5484 -1.9760 36 1 7.7612 1.5306 -2.4934 37 1 6.8576 0.3055 -6.4946 38 1 5.1897 -1.3244 -0.0141 39 1 3.8377 -2.4817 0.0864 40 1 3.9161 0.3389 1.2540 41 1 3.9336 -1.1897 2.1668 42 1 0.4168 0.0353 2.4431 43 1 1.9195 0.9825 2.5585 44 1 2.4121 -1.5976 3.5960 45 1 1.7894 -1.1505 8.0431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185225861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:38 Heat of formation + Delta-G solvation = 31.587344 kcal Electronic energy + Delta-G solvation = -27174.469940 eV Core-core repulsion = 23254.213139 eV Total energy + Delta-G solvation = -3920.256802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.37505 -41.26722 -39.26977 -37.35855 -36.69756 -35.18277 -34.30425 -33.53071 -32.32810 -31.10617 -29.31798 -28.56129 -27.05774 -25.25146 -23.80493 -22.88498 -22.43980 -22.21995 -21.19710 -20.18099 -19.59947 -18.56620 -18.21532 -17.01021 -16.79321 -16.61068 -16.16010 -15.77723 -15.59494 -15.53406 -15.24474 -15.05866 -14.78964 -14.61441 -14.42967 -14.28918 -14.07319 -13.88888 -13.44215 -13.23694 -13.14586 -12.94099 -12.84180 -12.68415 -12.66903 -12.36565 -12.14271 -11.96996 -11.83708 -11.62654 -11.56116 -11.45833 -11.24051 -11.13368 -10.90803 -10.47590 -9.70577 -9.43245 -9.25330 -8.00225 -5.34000 0.66634 0.94636 1.38708 1.45203 1.45426 1.52761 1.60718 1.72973 1.95894 2.51565 3.23154 3.31123 3.52618 3.61130 3.71648 3.80445 3.83573 3.98449 4.02426 4.04966 4.08582 4.29897 4.38807 4.48361 4.50030 4.61078 4.62047 4.65071 4.73329 4.79512 4.82472 4.99572 5.06694 5.12308 5.17027 5.26516 5.33560 5.34519 5.47518 5.56761 5.76508 5.78293 6.23240 6.29050 6.51019 7.02112 7.11109 7.86472 8.07745 9.21512 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002227 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.153689 B =12570.725128 C =13385.414145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.064 0.936 4 C 0.124 3.876 5 N -0.603 5.603 6 C 0.499 3.501 7 O -0.566 6.566 8 C 0.113 3.887 9 N -0.360 5.360 10 C 0.081 3.919 11 C -0.202 4.202 12 Cl -0.041 7.041 13 C 0.052 3.948 14 N -0.297 5.297 15 C 0.105 3.895 16 C -0.128 4.128 17 C -0.084 4.084 18 H 0.078 0.922 19 C 0.158 3.842 20 N -0.753 5.753 21 C -0.235 4.235 22 H 0.049 0.951 23 C -0.070 4.070 24 N -0.988 5.988 25 Si 0.959 3.041 26 H -0.281 1.281 27 H -0.237 1.237 28 H -0.299 1.299 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.219 0.781 37 H 0.205 0.795 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.026 0.974 43 H 0.014 0.986 44 H 0.368 0.632 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.098 -1.284 -24.594 28.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.083 0.917 4 C 0.001 3.999 5 N -0.336 5.336 6 C 0.286 3.714 7 O -0.444 6.444 8 C -0.011 4.011 9 N -0.142 5.142 10 C -0.066 4.066 11 C -0.241 4.241 12 Cl -0.012 7.012 13 C -0.135 4.135 14 N -0.117 5.117 15 C -0.016 4.016 16 C -0.166 4.166 17 C -0.103 4.103 18 H 0.097 0.903 19 C 0.032 3.968 20 N -0.399 5.399 21 C -0.366 4.366 22 H 0.067 0.933 23 C -0.261 4.261 24 N -0.638 5.638 25 Si 0.786 3.214 26 H -0.207 1.207 27 H -0.161 1.161 28 H -0.226 1.226 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.236 0.764 37 H 0.222 0.778 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.033 0.967 44 H 0.202 0.798 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.873 -1.769 -24.819 28.015 hybrid contribution 0.633 0.267 0.572 0.894 sum 13.506 -1.502 -24.246 27.795 Atomic orbital electron populations 1.21823 0.93956 1.02671 1.02076 1.21320 0.96485 0.99272 0.93422 0.91714 1.21610 0.79031 1.01282 0.97962 1.48178 1.06925 1.60233 1.18301 1.21000 0.90135 0.77737 0.82515 1.90770 1.75688 1.45634 1.32293 1.22001 0.89390 1.04948 0.84714 1.48061 1.31014 1.29625 1.05538 1.22820 0.92444 0.92139 0.99170 1.20905 1.05568 1.04371 0.93250 1.98327 1.57693 1.57610 1.87619 1.24274 0.93732 0.94022 1.01452 1.77560 1.22504 1.24045 0.87632 1.22084 0.99645 0.97932 0.81950 1.21936 0.94733 1.01760 0.98202 1.21298 0.96045 1.00013 0.92952 0.90332 1.20872 0.97050 0.93742 0.85119 1.42648 1.66060 1.29193 1.01996 1.19002 1.26954 1.06349 0.84257 0.93304 1.25616 1.02827 1.03108 0.94533 1.69913 1.53120 1.42645 0.98145 0.85351 0.78877 0.79263 0.77934 1.20702 1.16088 1.22624 0.92692 0.91771 0.91766 0.90556 0.90113 0.81328 0.83678 0.76450 0.77834 0.86301 0.89203 0.91525 0.90574 0.95622 0.96747 0.79772 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.82 71.98 0.63 -2.43 16 2 C -0.09 -1.79 2.41 -10.71 -0.03 -1.82 16 3 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 4 C 0.12 2.40 5.72 86.36 0.49 2.89 16 5 N -0.60 -10.17 2.97 -818.89 -2.43 -12.60 16 6 C 0.50 9.80 7.73 87.65 0.68 10.47 16 7 O -0.57 -16.95 15.13 -3.03 -0.05 -17.00 16 8 C 0.11 1.26 5.34 85.63 0.46 1.71 16 9 N -0.36 -6.27 3.40 -351.69 -1.19 -7.47 16 10 C 0.08 1.15 11.43 83.54 0.95 2.10 16 11 C -0.20 -3.45 6.65 22.02 0.15 -3.30 16 12 Cl -0.04 -0.62 29.30 -2.72 -0.08 -0.70 16 13 C 0.05 1.02 12.02 85.25 1.02 2.04 16 14 N -0.30 -6.95 11.66 -56.97 -0.66 -7.61 16 15 C 0.11 1.26 6.34 86.36 0.55 1.80 16 16 C -0.13 -2.47 5.25 30.67 0.16 -2.30 16 17 C -0.08 -2.00 1.73 -10.77 -0.02 -2.02 16 18 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 19 C 0.16 5.45 5.41 86.38 0.47 5.92 16 20 N -0.75 -32.42 5.12 -343.47 -1.76 -34.18 16 21 C -0.23 -12.98 10.47 84.03 0.88 -12.10 16 22 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 23 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 24 N -0.99 -62.37 13.97 21.65 0.30 -62.07 16 25 Si 0.96 42.65 27.74 68.60 1.90 44.55 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.24 -8.83 6.52 99.48 0.65 -8.18 16 28 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 29 H 0.05 1.31 6.29 -2.39 -0.02 1.30 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.76 7.01 -2.39 -0.02 1.75 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.17 0.49 7.62 -2.39 -0.02 0.47 16 35 H 0.15 0.86 7.94 -2.38 -0.02 0.85 16 36 H 0.22 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.21 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.12 0.54 5.93 -2.39 -0.01 0.52 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.08 1.66 7.15 -2.39 -0.02 1.64 16 42 H 0.03 0.94 6.14 -2.38 -0.01 0.92 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.37 14.54 4.71 -92.71 -0.44 14.10 16 45 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -80.60 375.25 3.41 -77.19 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.51 Total: 20.43 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 6.87 Total: -0.55 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -5.75 Total: -123.92 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.05 Total: -17.00 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.90 Total: 44.55 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -80.60 3.41 -77.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185225861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.777 kcal (2) G-P(sol) polarization free energy of solvation -80.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds