Wall clock time and date at job start Sat Apr 11 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.50135 * 2 1 4 4 C 1.53190 * 109.49584 * 239.93438 * 2 1 3 5 5 N 1.46927 * 108.77586 * 185.41428 * 4 2 1 6 6 C 1.34778 * 120.63201 * 233.63054 * 5 4 2 7 7 O 1.21616 * 120.00026 * 355.64724 * 6 5 4 8 8 C 1.47387 * 120.00225 * 175.64746 * 6 5 4 9 9 C 1.38065 * 126.42105 * 50.26981 * 8 6 5 10 10 N 1.34231 * 107.43711 * 179.97438 * 9 8 6 11 11 C 1.46502 * 125.73897 * 180.02562 * 10 9 8 12 12 N 1.39935 * 108.52270 * 0.02562 * 10 9 8 13 13 C 1.30530 * 108.89058 * 359.74356 * 12 10 9 14 14 Cl 1.73602 * 126.00208 * 180.26948 * 13 12 10 15 15 C 1.46925 * 118.74097 * 53.61265 * 5 4 2 16 16 C 1.53197 * 108.77246 * 306.39007 * 15 5 4 17 17 C 1.53041 * 109.49748 * 120.06652 * 2 1 3 18 18 H 1.08998 * 109.43199 * 61.27640 * 17 2 1 19 19 C 1.52999 * 109.48521 * 301.31723 * 17 2 1 20 20 N 1.46499 * 109.46860 * 174.91252 * 19 17 2 21 21 C 1.36943 * 119.99874 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99774 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00110 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99921 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99927 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46966 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47336 * 120.00210 * 25 23 21 28 28 H 1.48500 * 109.46789 * 240.00383 * 25 23 21 29 29 H 1.08993 * 109.47440 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46861 * 300.06751 * 1 2 3 31 31 H 1.09000 * 109.47440 * 60.05934 * 1 2 3 32 32 H 1.09009 * 109.58873 * 65.62981 * 4 2 1 33 33 H 1.09000 * 109.59069 * 305.20159 * 4 2 1 34 34 H 1.08003 * 126.28104 * 359.96706 * 9 8 6 35 35 H 1.09003 * 109.46672 * 90.00491 * 11 10 9 36 36 H 1.08999 * 109.47124 * 210.00179 * 11 10 9 37 37 H 1.08998 * 109.47334 * 330.00660 * 11 10 9 38 38 H 1.08994 * 109.58690 * 186.60462 * 15 5 4 39 39 H 1.09001 * 109.70296 * 66.24553 * 15 5 4 40 40 H 1.08994 * 109.49873 * 174.58344 * 16 15 5 41 41 H 1.08995 * 109.49911 * 294.65189 * 16 15 5 42 42 H 1.09000 * 109.47232 * 294.91437 * 19 17 2 43 43 H 1.09006 * 109.46925 * 54.91490 * 19 17 2 44 44 H 0.96998 * 120.00267 * 0.02562 * 20 19 17 45 45 H 0.96996 * 119.99638 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5045 -0.8289 -1.1698 6 6 4.2811 -0.3851 -2.1781 7 8 3.7709 0.0353 -3.1989 8 6 5.7486 -0.4092 -2.0436 9 6 6.5181 -1.4861 -1.6507 10 7 7.8004 -1.0891 -1.6604 11 6 8.9557 -1.9189 -1.3098 12 7 7.8479 0.2506 -2.0618 13 6 6.6326 0.6645 -2.2976 14 17 6.1810 2.2549 -2.8271 15 6 4.1053 -1.4268 0.0303 16 6 3.5709 -0.6955 1.2658 17 6 2.0408 -0.7228 1.2485 18 1 1.6961 -1.7568 1.2354 19 6 1.5044 -0.0228 2.4988 20 7 1.8923 -0.7839 3.6889 21 6 1.5221 -0.3460 4.9325 22 1 0.9437 0.5602 5.0358 23 6 1.8901 -1.0669 6.0602 24 7 2.5953 -2.1710 5.9343 25 14 1.3844 -0.4699 7.7565 26 1 0.6035 0.7865 7.6265 27 1 0.5504 -1.5055 8.4175 28 1 2.5979 -0.2156 8.5738 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3634 0.5129 -0.8905 32 1 1.7637 -0.1573 -2.1390 33 1 1.6052 -1.7213 -1.2985 34 1 6.1550 -2.4678 -1.3843 35 1 9.3267 -2.4213 -2.2032 36 1 9.7423 -1.2893 -0.8939 37 1 8.6577 -2.6634 -0.5716 38 1 5.1895 -1.3247 -0.0143 39 1 3.8396 -2.4825 0.0871 40 1 3.9334 -1.1904 2.1666 41 1 3.9164 0.3382 1.2545 42 1 1.9206 0.9829 2.5590 43 1 0.4173 0.0366 2.4438 44 1 2.4120 -1.5976 3.5961 45 1 2.8527 -2.6745 6.7224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185470801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:59 Heat of formation + Delta-G solvation = 49.861604 kcal Electronic energy + Delta-G solvation = -27750.382533 eV Core-core repulsion = 23830.918162 eV Total energy + Delta-G solvation = -3919.464371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84711 -39.92434 -37.85850 -36.96695 -34.96612 -33.74560 -33.47014 -31.99633 -30.90361 -30.28431 -27.66335 -26.89281 -26.38702 -23.97404 -22.88213 -22.18066 -21.59844 -21.21219 -20.03726 -19.30724 -17.49728 -17.15324 -16.72892 -16.16126 -15.89808 -15.33590 -15.08094 -14.82135 -14.48438 -14.08302 -13.97635 -13.83001 -13.61891 -13.50772 -13.20437 -13.05201 -12.79722 -12.54164 -12.44438 -11.97950 -11.89925 -11.87294 -11.75548 -11.57172 -11.00006 -10.99312 -10.88066 -10.81275 -10.36956 -10.27206 -10.16504 -9.97594 -9.90591 -9.65628 -9.63550 -9.00177 -8.86918 -8.53835 -6.90690 -5.78251 -3.05504 1.13740 1.17203 1.77843 2.35934 2.75572 3.14887 3.42111 3.48450 3.50138 4.07013 4.27877 4.57463 4.58560 4.67042 4.84510 4.92184 4.96127 4.98445 5.01488 5.04630 5.15153 5.32868 5.45420 5.53255 5.56742 5.60693 5.73607 5.82683 5.89846 5.93747 6.00389 6.09193 6.25400 6.29857 6.32303 6.36017 6.50053 6.54281 6.65015 6.85078 6.95371 6.96283 7.39789 7.70405 8.17137 8.41591 9.52897 10.11471 10.46099 11.44966 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.002946 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.455237 B = 9502.948375 C =10615.572350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.073 0.927 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.595 3.405 7 O -0.533 6.533 8 C -0.266 4.266 9 C 0.106 3.894 10 N -0.348 5.348 11 C 0.096 3.904 12 N -0.281 5.281 13 C 0.166 3.834 14 Cl 0.024 6.976 15 C 0.100 3.900 16 C -0.125 4.125 17 C -0.088 4.088 18 H 0.072 0.928 19 C 0.156 3.844 20 N -0.732 5.732 21 C -0.235 4.235 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.194 0.806 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.016 0.984 43 H 0.025 0.975 44 H 0.382 0.618 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.648 -1.123 -18.277 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.001 4.001 5 N -0.334 5.334 6 C 0.382 3.618 7 O -0.410 6.410 8 C -0.282 4.282 9 C -0.045 4.045 10 N -0.129 5.129 11 C -0.045 4.045 12 N -0.106 5.106 13 C -0.026 4.026 14 Cl 0.052 6.948 15 C -0.022 4.022 16 C -0.163 4.163 17 C -0.107 4.107 18 H 0.090 0.910 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.584 5.584 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.211 0.789 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.042 0.958 44 H 0.216 0.784 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.619 -0.420 -18.691 21.501 hybrid contribution -0.790 -0.151 1.141 1.396 sum 9.829 -0.571 -17.550 20.123 Atomic orbital electron populations 1.21825 0.94370 1.02162 1.02061 1.21468 0.96098 1.00037 0.94169 0.90841 1.21708 0.78271 1.00934 0.99217 1.47991 1.06951 1.60495 1.17951 1.17147 0.84541 0.77269 0.82888 1.90779 1.74621 1.47105 1.28506 1.20049 0.94960 0.94242 1.18916 1.23116 0.83718 0.99970 0.97653 1.48173 1.06436 1.08124 1.50145 1.22128 0.86251 0.93838 1.02259 1.77220 1.19178 0.92002 1.22236 1.22551 0.90845 0.89672 0.99564 1.98425 1.90858 1.17710 1.87780 1.22020 0.98365 0.97285 0.84548 1.21916 0.96105 1.01222 0.97069 1.21329 0.94655 1.00141 0.94553 0.90983 1.20762 0.96690 0.94066 0.85627 1.42381 1.65475 1.28869 1.00877 1.19287 1.27433 1.06081 0.83855 0.91237 1.24704 1.01024 0.97558 0.97763 1.69657 1.43047 1.17341 1.28374 0.86140 0.77658 0.77782 0.84786 1.20581 1.21909 1.21934 0.92516 0.91346 0.92969 0.89098 0.91424 0.78917 0.89851 0.88415 0.88310 0.90041 0.91039 0.89423 0.91769 0.96569 0.95767 0.78367 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.82 37.16 0.33 -1.43 16 2 C -0.10 -1.27 2.41 -90.50 -0.22 -1.49 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.48 5.71 -3.71 -0.02 1.46 16 5 N -0.60 -7.53 2.97 -174.04 -0.52 -8.05 16 6 C 0.59 8.34 7.45 -12.54 -0.09 8.24 16 7 O -0.53 -9.03 16.54 5.26 0.09 -8.94 16 8 C -0.27 -3.31 5.15 -105.04 -0.54 -3.85 16 9 C 0.11 0.94 9.13 -16.57 -0.15 0.79 16 10 N -0.35 -3.12 3.98 -67.60 -0.27 -3.39 16 11 C 0.10 0.39 11.44 59.85 0.68 1.08 16 12 N -0.28 -3.48 12.50 33.17 0.41 -3.07 16 13 C 0.17 2.21 7.89 -16.91 -0.13 2.08 16 14 Cl 0.02 0.32 29.19 -51.86 -1.51 -1.19 16 15 C 0.10 1.13 5.90 -3.71 -0.02 1.11 16 16 C -0.12 -1.79 5.25 -26.61 -0.14 -1.93 16 17 C -0.09 -1.33 1.73 -90.58 -0.16 -1.48 16 18 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 19 C 0.16 3.02 5.41 -4.04 -0.02 3.00 16 20 N -0.73 -17.84 5.32 -59.91 -0.32 -18.16 16 21 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 25 Si 0.90 22.17 29.55 -169.99 -5.02 17.15 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.18 7.03 -51.92 -0.36 0.82 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.19 1.00 7.62 -52.48 -0.40 0.60 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.08 0.81 4.58 -51.93 -0.24 0.58 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 44 H 0.38 9.65 6.85 -40.82 -0.28 9.37 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -34.52 377.55 -7.95 -42.47 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.50 Total: 3.87 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.73 Total: 0.43 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.03 Total: -59.48 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.51 Total: -1.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.52 -7.95 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185470801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.333 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds