Wall clock time and date at job start Sat Apr 11 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.50135 * 2 1 4 4 C 1.53190 * 109.49584 * 239.93438 * 2 1 3 5 5 N 1.46927 * 108.77586 * 185.41428 * 4 2 1 6 6 C 1.34778 * 120.63201 * 233.63054 * 5 4 2 7 7 O 1.21616 * 120.00026 * 355.64724 * 6 5 4 8 8 C 1.47387 * 120.00225 * 175.64746 * 6 5 4 9 9 C 1.38065 * 126.42105 * 50.26981 * 8 6 5 10 10 N 1.34231 * 107.43711 * 179.97438 * 9 8 6 11 11 C 1.46502 * 125.73897 * 180.02562 * 10 9 8 12 12 N 1.39935 * 108.52270 * 0.02562 * 10 9 8 13 13 C 1.30530 * 108.89058 * 359.74356 * 12 10 9 14 14 Cl 1.73602 * 126.00208 * 180.26948 * 13 12 10 15 15 C 1.46925 * 118.74097 * 53.61265 * 5 4 2 16 16 C 1.53197 * 108.77246 * 306.39007 * 15 5 4 17 17 C 1.53041 * 109.49748 * 120.06652 * 2 1 3 18 18 H 1.08998 * 109.43199 * 61.27640 * 17 2 1 19 19 C 1.52999 * 109.48521 * 301.31723 * 17 2 1 20 20 N 1.46499 * 109.46860 * 174.91252 * 19 17 2 21 21 C 1.36943 * 119.99874 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99774 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00110 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99921 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99927 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46966 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47336 * 120.00210 * 25 23 21 28 28 H 1.48500 * 109.46789 * 240.00383 * 25 23 21 29 29 H 1.08993 * 109.47440 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46861 * 300.06751 * 1 2 3 31 31 H 1.09000 * 109.47440 * 60.05934 * 1 2 3 32 32 H 1.09009 * 109.58873 * 65.62981 * 4 2 1 33 33 H 1.09000 * 109.59069 * 305.20159 * 4 2 1 34 34 H 1.08003 * 126.28104 * 359.96706 * 9 8 6 35 35 H 1.09003 * 109.46672 * 90.00491 * 11 10 9 36 36 H 1.08999 * 109.47124 * 210.00179 * 11 10 9 37 37 H 1.08998 * 109.47334 * 330.00660 * 11 10 9 38 38 H 1.08994 * 109.58690 * 186.60462 * 15 5 4 39 39 H 1.09001 * 109.70296 * 66.24553 * 15 5 4 40 40 H 1.08994 * 109.49873 * 174.58344 * 16 15 5 41 41 H 1.08995 * 109.49911 * 294.65189 * 16 15 5 42 42 H 1.09000 * 109.47232 * 294.91437 * 19 17 2 43 43 H 1.09006 * 109.46925 * 54.91490 * 19 17 2 44 44 H 0.96998 * 120.00267 * 0.02562 * 20 19 17 45 45 H 0.96996 * 119.99638 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5045 -0.8289 -1.1698 6 6 4.2811 -0.3851 -2.1781 7 8 3.7709 0.0353 -3.1989 8 6 5.7486 -0.4092 -2.0436 9 6 6.5181 -1.4861 -1.6507 10 7 7.8004 -1.0891 -1.6604 11 6 8.9557 -1.9189 -1.3098 12 7 7.8479 0.2506 -2.0618 13 6 6.6326 0.6645 -2.2976 14 17 6.1810 2.2549 -2.8271 15 6 4.1053 -1.4268 0.0303 16 6 3.5709 -0.6955 1.2658 17 6 2.0408 -0.7228 1.2485 18 1 1.6961 -1.7568 1.2354 19 6 1.5044 -0.0228 2.4988 20 7 1.8923 -0.7839 3.6889 21 6 1.5221 -0.3460 4.9325 22 1 0.9437 0.5602 5.0358 23 6 1.8901 -1.0669 6.0602 24 7 2.5953 -2.1710 5.9343 25 14 1.3844 -0.4699 7.7565 26 1 0.6035 0.7865 7.6265 27 1 0.5504 -1.5055 8.4175 28 1 2.5979 -0.2156 8.5738 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3634 0.5129 -0.8905 32 1 1.7637 -0.1573 -2.1390 33 1 1.6052 -1.7213 -1.2985 34 1 6.1550 -2.4678 -1.3843 35 1 9.3267 -2.4213 -2.2032 36 1 9.7423 -1.2893 -0.8939 37 1 8.6577 -2.6634 -0.5716 38 1 5.1895 -1.3247 -0.0143 39 1 3.8396 -2.4825 0.0871 40 1 3.9334 -1.1904 2.1666 41 1 3.9164 0.3382 1.2545 42 1 1.9206 0.9829 2.5590 43 1 0.4173 0.0366 2.4438 44 1 2.4120 -1.5976 3.5961 45 1 2.8527 -2.6745 6.7224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185470801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:58 Heat of formation + Delta-G solvation = 27.163941 kcal Electronic energy + Delta-G solvation = -27751.366778 eV Core-core repulsion = 23830.918162 eV Total energy + Delta-G solvation = -3920.448615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65578 -40.96669 -39.04602 -37.90994 -36.51626 -35.03332 -34.23184 -33.44899 -31.97451 -31.72862 -28.50166 -28.15375 -27.33769 -25.59163 -24.19376 -23.16610 -22.58760 -22.32228 -21.12490 -20.35134 -19.12241 -18.34507 -17.71231 -17.02517 -16.76304 -16.64902 -16.13263 -16.01876 -15.74000 -15.50075 -15.22682 -15.08351 -14.74724 -14.35823 -14.22108 -14.14753 -13.81939 -13.75987 -13.55674 -13.09712 -12.92924 -12.90856 -12.83008 -12.71914 -12.67650 -12.58668 -12.12544 -11.95033 -11.88336 -11.87874 -11.59272 -11.43022 -11.14907 -10.99696 -10.86741 -10.48419 -9.85457 -9.55691 -8.93154 -7.92911 -5.19533 0.31970 0.44252 0.83366 1.48491 1.49192 1.58674 1.62409 1.81300 2.19493 2.57852 3.34301 3.40937 3.62534 3.74477 3.80296 3.86099 3.96469 4.06794 4.17856 4.29412 4.36920 4.43482 4.44739 4.45915 4.57879 4.67326 4.71181 4.74183 4.76757 4.80383 4.86415 4.90260 5.04508 5.14752 5.16839 5.25323 5.33905 5.40625 5.51210 5.57313 5.65017 5.71990 6.15621 6.30863 6.39842 7.14985 7.37829 8.14156 8.39282 9.30581 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.002946 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.455237 B = 9502.948375 C =10615.572350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.059 0.941 4 C 0.124 3.876 5 N -0.599 5.599 6 C 0.596 3.404 7 O -0.570 6.570 8 C -0.299 4.299 9 C 0.129 3.871 10 N -0.339 5.339 11 C 0.083 3.917 12 N -0.307 5.307 13 C 0.147 3.853 14 Cl 0.009 6.991 15 C 0.109 3.891 16 C -0.120 4.120 17 C -0.077 4.077 18 H 0.076 0.924 19 C 0.156 3.844 20 N -0.740 5.740 21 C -0.244 4.244 22 H 0.069 0.931 23 C -0.070 4.070 24 N -0.964 5.964 25 Si 0.967 3.033 26 H -0.271 1.271 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.237 0.763 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.005 0.995 43 H 0.026 0.974 44 H 0.377 0.623 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.037 -2.787 -18.384 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.078 0.922 4 C 0.002 3.998 5 N -0.330 5.330 6 C 0.384 3.616 7 O -0.450 6.450 8 C -0.314 4.314 9 C -0.023 4.023 10 N -0.119 5.119 11 C -0.055 4.055 12 N -0.133 5.133 13 C -0.045 4.045 14 Cl 0.037 6.963 15 C -0.013 4.013 16 C -0.158 4.158 17 C -0.096 4.096 18 H 0.094 0.906 19 C 0.030 3.970 20 N -0.383 5.383 21 C -0.376 4.376 22 H 0.087 0.913 23 C -0.263 4.263 24 N -0.615 5.615 25 Si 0.796 3.204 26 H -0.196 1.196 27 H -0.219 1.219 28 H -0.221 1.221 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.253 0.747 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.149 0.851 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.023 0.977 43 H 0.044 0.956 44 H 0.210 0.790 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.020 -2.062 -18.804 21.892 hybrid contribution -0.856 0.352 1.180 1.499 sum 10.164 -1.710 -17.624 20.417 Atomic orbital electron populations 1.21792 0.93376 1.02760 1.02183 1.21362 0.96880 0.99065 0.93551 0.92231 1.21696 0.78354 1.01703 0.98087 1.48031 1.06998 1.60103 1.17882 1.17359 0.85261 0.76451 0.82492 1.90752 1.75454 1.48768 1.30024 1.20053 0.94291 0.95437 1.21668 1.23687 0.83110 1.00392 0.95082 1.48618 1.07802 1.07139 1.48295 1.22617 0.84987 0.93840 1.04082 1.77146 1.18936 0.94162 1.23048 1.22682 0.91594 0.89601 1.00604 1.98405 1.91026 1.18821 1.88019 1.22054 0.99149 0.97878 0.82258 1.21807 0.95483 1.00520 0.98020 1.21212 0.95182 0.99884 0.93292 0.90611 1.20884 0.96759 0.93431 0.85959 1.42527 1.65313 1.29012 1.01446 1.19619 1.26754 1.05855 0.85335 0.91328 1.25433 1.01699 0.98026 1.01093 1.69783 1.44347 1.18411 1.28996 0.85172 0.77131 0.77528 0.80537 1.19558 1.21922 1.22061 0.91656 0.92729 0.91352 0.89763 0.89472 0.74681 0.87980 0.88360 0.85064 0.88389 0.88439 0.91323 0.93423 0.97717 0.95591 0.79029 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.82 71.98 0.63 -2.60 16 2 C -0.09 -2.22 2.41 -10.72 -0.03 -2.25 16 3 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 4 C 0.12 2.82 5.71 86.36 0.49 3.31 16 5 N -0.60 -13.93 2.97 -822.80 -2.45 -16.38 16 6 C 0.60 16.12 7.45 86.65 0.65 16.77 16 7 O -0.57 -19.28 16.54 -4.08 -0.07 -19.35 16 8 C -0.30 -7.04 5.15 -20.14 -0.10 -7.14 16 9 C 0.13 1.89 9.13 84.28 0.77 2.66 16 10 N -0.34 -5.16 3.98 -367.78 -1.46 -6.62 16 11 C 0.08 0.39 11.44 127.77 1.46 1.85 16 12 N -0.31 -7.33 12.50 -48.96 -0.61 -7.94 16 13 C 0.15 3.88 7.89 85.66 0.68 4.56 16 14 Cl 0.01 0.26 29.19 -2.72 -0.08 0.18 16 15 C 0.11 2.17 5.90 86.36 0.51 2.68 16 16 C -0.12 -3.34 5.25 30.68 0.16 -3.18 16 17 C -0.08 -2.25 1.73 -10.77 -0.02 -2.27 16 18 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 19 C 0.16 6.05 5.41 86.38 0.47 6.52 16 20 N -0.74 -36.20 5.32 -343.44 -1.83 -38.03 16 21 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 22 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 24 N -0.96 -56.88 13.06 21.65 0.28 -56.60 16 25 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.38 6.30 -2.39 -0.02 1.37 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 2.10 7.03 -2.38 -0.02 2.08 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.24 1.21 7.62 -2.91 -0.02 1.18 16 35 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.10 1.65 4.58 -2.39 -0.01 1.64 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 2.20 7.15 -2.39 -0.02 2.18 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.03 1.02 6.14 -2.38 -0.01 1.00 16 44 H 0.38 19.09 6.85 -92.71 -0.63 18.46 16 45 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -76.14 377.55 3.17 -72.97 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.38 Total: 19.42 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 6.98 Total: 4.85 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -6.06 Total: -125.56 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.07 Total: -19.35 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -0.08 Total: 0.18 kcal Total: -76.14 3.17 -72.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185470801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.130 kcal (2) G-P(sol) polarization free energy of solvation -76.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds