Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.28630 * 2 1 4 4 C 1.54374 * 110.41241 * 237.81466 * 2 1 3 5 5 N 1.48555 * 104.59646 * 217.20558 * 4 2 1 6 6 C 1.46904 * 110.99825 * 159.03543 * 5 4 2 7 7 C 1.50703 * 109.46986 * 61.07751 * 6 5 4 8 8 O 1.21287 * 119.99865 * 6.05954 * 7 6 5 9 9 N 1.34773 * 119.99986 * 186.05593 * 7 6 5 10 10 C 1.37097 * 120.00420 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99441 * 0.02562 * 10 9 7 12 12 C 1.38947 * 120.00435 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00022 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47021 * 60.00030 * 14 12 10 16 16 H 1.48494 * 109.47154 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47016 * 300.00306 * 14 12 10 18 18 C 1.48565 * 104.22430 * 39.48442 * 5 4 2 19 19 C 1.54262 * 110.32471 * 122.12206 * 2 1 3 20 20 H 1.09000 * 110.32331 * 0.10488 * 19 2 1 21 21 N 1.46499 * 110.32529 * 237.89397 * 19 2 1 22 22 C 1.34775 * 119.99694 * 155.00098 * 21 19 2 23 23 O 1.21285 * 120.00040 * 0.02562 * 22 21 19 24 24 C 1.50699 * 119.99914 * 180.02562 * 22 21 19 25 25 H 1.08998 * 110.50385 * 40.70376 * 24 22 21 26 26 C 1.54089 * 110.56639 * 277.95797 * 24 22 21 27 27 O 1.45696 * 104.01295 * 241.42839 * 26 24 22 28 28 C 1.33775 * 109.47472 * 359.97438 * 27 26 24 29 29 O 1.21508 * 123.06816 * 180.02562 * 28 27 26 30 30 N 1.34324 * 113.90335 * 359.91530 * 28 27 26 31 31 H 1.09005 * 109.46817 * 299.29950 * 1 2 3 32 32 H 1.08994 * 109.46888 * 59.29884 * 1 2 3 33 33 H 1.08994 * 109.46772 * 179.29925 * 1 2 3 34 34 H 1.09004 * 110.41010 * 335.98716 * 4 2 1 35 35 H 1.09000 * 110.41123 * 98.42549 * 4 2 1 36 36 H 1.09003 * 109.47034 * 181.07201 * 6 5 4 37 37 H 1.08993 * 109.47290 * 301.07312 * 6 5 4 38 38 H 0.97001 * 119.99921 * 359.97438 * 9 7 6 39 39 H 0.97000 * 120.00235 * 180.02562 * 13 12 10 40 40 H 1.08999 * 110.41354 * 201.74305 * 18 5 4 41 41 H 1.09001 * 110.51210 * 79.33794 * 18 5 4 42 42 H 0.96999 * 120.00547 * 334.99844 * 21 19 2 43 43 H 1.09003 * 110.52063 * 0.05964 * 26 24 22 44 44 H 1.09002 * 110.52332 * 122.79169 * 26 24 22 45 45 H 0.97001 * 125.73295 * 180.11040 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7707 -1.2245 5 7 3.2721 -1.4805 -0.7204 6 6 3.6119 -2.6193 -1.5841 7 6 3.9173 -2.1223 -2.9736 8 8 3.9657 -0.9306 -3.1945 9 7 4.1368 -3.0019 -3.9708 10 6 4.4141 -2.5499 -5.2351 11 1 4.4571 -1.4887 -5.4317 12 6 4.6399 -3.4567 -6.2633 13 7 4.5871 -4.7478 -6.0241 14 14 5.0170 -2.8407 -7.9860 15 1 6.2516 -2.0160 -7.9575 16 1 5.2158 -3.9992 -8.8935 17 1 3.8828 -2.0171 -8.4765 18 6 2.8829 -1.9400 0.6377 19 6 2.0658 -0.7692 1.2251 20 1 1.2388 -1.1483 1.8255 21 7 2.9273 0.0975 2.0332 22 6 3.0931 -0.1534 3.3470 23 8 2.5295 -1.0968 3.8601 24 6 3.9787 0.7385 4.1784 25 1 3.8333 1.7834 3.9045 26 6 5.4574 0.3368 4.0153 27 8 5.8693 -0.0462 5.3593 28 6 4.8371 0.0931 6.1988 29 8 4.9088 -0.1588 7.3853 30 7 3.7143 0.5392 5.6117 31 1 -0.3633 0.5029 0.8963 32 1 -0.3633 0.5247 -0.8836 33 1 -0.3633 -1.0275 -0.0126 34 1 1.3264 -1.4856 -1.5800 35 1 2.3413 -0.0774 -2.0201 36 1 4.4853 -3.1325 -1.1817 37 1 2.7699 -3.3103 -1.6222 38 1 4.0986 -3.9549 -3.7941 39 1 4.7450 -5.3809 -6.7418 40 1 3.7690 -2.1271 1.2443 41 1 2.2689 -2.8385 0.5756 42 1 3.3783 0.8518 1.6228 43 1 5.5509 -0.5072 3.3319 44 1 6.0465 1.1830 3.6617 45 1 2.8684 0.7027 6.0574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206919151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = -158.934414 kcal Electronic energy + Delta-G solvation = -29706.888781 eV Core-core repulsion = 25337.661171 eV Total energy + Delta-G solvation = -4369.227610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.86093 -41.22537 -40.26262 -39.15709 -38.33567 -36.07395 -35.73586 -35.38818 -33.83538 -33.21010 -31.19341 -29.90263 -28.46193 -26.93164 -26.04116 -24.96157 -23.54029 -22.78753 -21.44599 -21.33363 -20.95552 -19.85885 -19.29382 -18.89632 -18.25523 -17.80571 -17.49640 -17.10674 -16.75853 -16.42894 -16.22414 -16.03123 -15.78791 -15.52787 -15.35887 -15.25389 -15.00325 -14.66334 -14.48962 -14.05211 -13.97819 -13.63610 -13.51667 -13.36855 -13.14405 -13.01183 -12.91409 -12.61700 -12.42125 -12.32669 -12.12761 -12.04724 -11.92220 -11.78135 -11.71425 -11.46699 -11.42468 -10.38542 -10.32424 -10.09327 -10.00013 -9.41968 -8.45585 -5.94201 1.30925 1.38665 1.40425 1.42677 1.53280 1.62257 1.99428 2.05869 2.28824 2.59744 2.81292 3.08635 3.21389 3.31984 3.43140 3.54559 3.65303 3.79375 4.06052 4.08463 4.21862 4.27153 4.39182 4.43746 4.44728 4.49833 4.53739 4.56161 4.67386 4.77146 4.83565 4.94580 5.07816 5.26710 5.30105 5.41700 5.46723 5.66970 5.81597 5.88930 6.06349 6.07361 6.45951 6.60711 6.90209 7.11287 7.13545 7.57162 8.11823 8.71610 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.002147 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.554650 B =13037.839362 C =13835.642676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.103 0.897 4 C 0.038 3.962 5 N -0.492 5.492 6 C 0.044 3.956 7 C 0.444 3.556 8 O -0.610 6.610 9 N -0.576 5.576 10 C -0.330 4.330 11 H 0.082 0.918 12 C -0.015 4.015 13 N -0.923 5.923 14 Si 0.992 3.008 15 H -0.271 1.271 16 H -0.274 1.274 17 H -0.271 1.271 18 C 0.020 3.980 19 C 0.154 3.846 20 H 0.098 0.902 21 N -0.692 5.692 22 C 0.505 3.495 23 O -0.568 6.568 24 C 0.084 3.916 25 H 0.181 0.819 26 C 0.048 3.952 27 O -0.340 6.340 28 C 0.647 3.353 29 O -0.571 6.571 30 N -0.700 5.700 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.394 0.606 39 H 0.277 0.723 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.421 0.579 43 H 0.112 0.888 44 H 0.166 0.834 45 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 12.362 16.281 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.121 0.879 4 C -0.090 4.090 5 N -0.216 5.216 6 C -0.088 4.088 7 C 0.231 3.769 8 O -0.496 6.496 9 N -0.213 5.213 10 C -0.459 4.459 11 H 0.100 0.900 12 C -0.215 4.215 13 N -0.564 5.564 14 Si 0.816 3.184 15 H -0.196 1.196 16 H -0.198 1.198 17 H -0.196 1.196 18 C -0.108 4.108 19 C 0.048 3.952 20 H 0.116 0.884 21 N -0.344 5.344 22 C 0.289 3.711 23 O -0.446 6.446 24 C -0.025 4.025 25 H 0.198 0.802 26 C -0.026 4.026 27 O -0.249 6.249 28 C 0.400 3.600 29 O -0.459 6.459 30 N -0.372 5.372 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.228 0.772 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.260 0.740 43 H 0.130 0.870 44 H 0.184 0.816 45 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -4.922 12.416 16.934 21.567 hybrid contribution -0.732 -1.060 -1.177 1.745 sum -5.654 11.356 15.757 20.229 Atomic orbital electron populations 1.21818 0.92770 1.02276 1.02977 1.22133 0.96826 1.00247 0.91462 0.87891 1.23227 0.90051 0.97675 0.98047 1.65195 1.33883 1.21154 1.01402 1.21958 1.02548 0.93436 0.90848 1.20601 0.82648 0.86548 0.87095 1.90460 1.57480 1.17221 1.84407 1.41958 1.62521 1.08821 1.08018 1.19620 1.46670 0.93907 0.85709 0.89997 1.26048 0.96761 0.95057 1.03606 1.69671 1.49744 1.01539 1.35402 0.84994 0.78914 0.77707 0.76781 1.19602 1.19847 1.19596 1.23632 0.99761 0.97263 0.90194 1.21676 0.92192 0.89825 0.91463 0.88430 1.45900 1.48554 1.32237 1.07715 1.20998 0.81937 0.85268 0.82881 1.90786 1.49557 1.31532 1.72703 1.22605 0.94849 1.03784 0.81237 0.80167 1.24752 0.91546 1.05648 0.80636 1.87286 1.34881 1.81171 1.21607 1.18686 0.80239 0.75962 0.85072 1.91042 1.84108 1.57336 1.13437 1.45706 1.13994 1.69277 1.08268 0.90673 0.91843 0.92848 0.94909 0.90848 0.87555 0.91833 0.77211 0.91395 0.89806 0.92888 0.74029 0.87022 0.81609 0.70955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.91 71.98 0.64 -1.37 16 2 C -0.09 -1.46 3.41 -9.90 -0.03 -1.50 16 3 H 0.10 1.42 7.67 -2.39 -0.02 1.41 16 4 C 0.04 1.02 5.13 86.45 0.44 1.47 16 5 N -0.49 -13.64 5.18 -886.02 -4.59 -18.24 16 6 C 0.04 1.42 5.39 85.56 0.46 1.88 16 7 C 0.44 19.88 7.43 87.66 0.65 20.53 16 8 O -0.61 -31.05 14.01 -3.05 -0.04 -31.09 16 9 N -0.58 -28.53 5.29 -306.99 -1.62 -30.15 16 10 C -0.33 -18.07 9.68 84.04 0.81 -17.26 16 11 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 12 C -0.02 -0.79 5.50 84.93 0.47 -0.32 16 13 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 14 Si 0.99 41.79 29.55 68.60 2.03 43.81 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 C 0.02 0.43 6.21 86.45 0.54 0.97 16 19 C 0.15 2.51 3.06 45.89 0.14 2.65 16 20 H 0.10 1.73 7.13 -2.39 -0.02 1.71 16 21 N -0.69 -7.34 5.06 -438.28 -2.22 -9.56 16 22 C 0.50 6.58 6.94 87.66 0.61 7.19 16 23 O -0.57 -13.15 16.23 -3.05 -0.05 -13.20 16 24 C 0.08 0.56 4.16 44.50 0.19 0.75 16 25 H 0.18 -0.60 8.14 -2.39 -0.02 -0.62 16 26 C 0.05 0.35 7.87 72.35 0.57 0.92 16 27 O -0.34 -6.39 11.09 -47.35 -0.53 -6.91 16 28 C 0.65 14.37 9.16 129.86 1.19 15.56 16 29 O -0.57 -18.11 18.04 19.66 0.35 -17.76 16 30 N -0.70 -9.41 5.67 -572.79 -3.25 -12.65 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.82 8.13 -2.39 -0.02 0.80 16 34 H 0.03 0.93 7.67 -2.39 -0.02 0.91 16 35 H 0.07 2.52 6.54 -2.39 -0.02 2.50 16 36 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.06 1.89 7.98 -2.39 -0.02 1.88 16 38 H 0.39 18.81 7.90 -92.71 -0.73 18.08 16 39 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 40 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 41 H 0.05 1.14 7.92 -2.39 -0.02 1.12 16 42 H 0.42 2.20 8.36 -92.71 -0.77 1.43 16 43 H 0.11 0.88 7.72 -2.39 -0.02 0.86 16 44 H 0.17 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.45 4.98 8.96 -92.71 -0.83 4.15 16 Total: -1.00 -81.69 377.55 -4.23 -85.93 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -1.27 Total: 27.13 kcal Atomic # 6 Polarization: 24.79 SS G_CDS: 6.67 Total: 31.47 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -11.40 Total: -119.39 kcal Atomic # 8 Polarization: -68.69 SS G_CDS: -0.26 Total: -68.95 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -81.69 -4.23 -85.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206919151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.009 kcal (2) G-P(sol) polarization free energy of solvation -81.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds