Wall clock time and date at job start Sat Apr 11 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08988 * 110.65662 * 2 1 4 4 C 1.54590 * 110.98669 * 236.84432 * 2 1 3 5 5 N 1.48124 * 103.42447 * 204.37500 * 4 2 1 6 6 C 1.34776 * 127.03540 * 219.29156 * 5 4 2 7 7 O 1.21282 * 119.99940 * 179.68412 * 6 5 4 8 8 C 1.50698 * 120.00035 * 359.67527 * 6 5 4 9 9 S 1.81000 * 109.47349 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00068 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00457 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31640 * 119.99650 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00461 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46935 * 59.99953 * 14 12 10 16 16 H 1.48500 * 109.47191 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47402 * 299.99953 * 14 12 10 18 18 C 1.47482 * 105.92940 * 39.02324 * 5 4 2 19 19 C 1.54006 * 107.08610 * 334.78164 * 18 5 4 20 20 H 1.09000 * 110.32600 * 120.29566 * 19 18 5 21 21 N 1.46896 * 110.32766 * 242.41384 * 19 18 5 22 22 C 1.46900 * 110.99840 * 273.54456 * 21 19 18 23 23 C 1.50700 * 109.46984 * 179.97438 * 22 21 19 24 24 N 1.33312 * 126.55089 * 269.68998 * 23 22 21 25 25 N 1.28998 * 107.35966 * 179.83794 * 24 23 22 26 26 N 1.28783 * 108.71903 * 0.42665 * 25 24 23 27 27 C 1.46502 * 125.44657 * 179.72620 * 26 25 24 28 28 N 1.28879 * 109.10757 * 359.73223 * 26 25 24 29 29 H 1.09003 * 109.47013 * 296.80935 * 1 2 3 30 30 H 1.08999 * 109.47247 * 56.80671 * 1 2 3 31 31 H 1.09005 * 109.47376 * 176.80852 * 1 2 3 32 32 H 1.08999 * 110.62274 * 85.85890 * 4 2 1 33 33 H 1.09005 * 110.55353 * 322.85313 * 4 2 1 34 34 H 1.09001 * 109.47122 * 60.00223 * 8 6 5 35 35 H 1.09004 * 109.47371 * 300.00514 * 8 6 5 36 36 H 0.97001 * 119.99781 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.90992 * 94.14019 * 18 5 4 38 38 H 1.08998 * 109.91463 * 215.22525 * 18 5 4 39 39 H 1.00895 * 111.00023 * 37.49956 * 21 19 18 40 40 H 1.09003 * 109.47424 * 299.99863 * 22 21 19 41 41 H 1.09000 * 109.46881 * 60.00197 * 22 21 19 42 42 H 1.09003 * 109.47437 * 270.00481 * 27 26 25 43 43 H 1.09002 * 109.47345 * 30.00470 * 27 26 25 44 44 H 1.09006 * 109.46980 * 150.00493 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0198 0.0000 4 6 2.0837 -0.7894 -1.2084 5 7 3.4322 -1.2057 -0.7585 6 6 4.5593 -1.2406 -1.4965 7 8 5.6027 -1.6001 -0.9934 8 6 4.5233 -0.8329 -2.9468 9 16 6.1802 -0.9878 -3.6586 10 6 5.8548 -0.4629 -5.3087 11 1 4.8550 -0.1719 -5.5956 12 6 6.8830 -0.4242 -6.2403 13 7 8.1014 -0.7793 -5.8907 14 14 6.5379 0.1316 -7.9899 15 1 6.0160 1.5218 -7.9737 16 1 7.7936 0.0839 -8.7812 17 1 5.5298 -0.7685 -8.6055 18 6 3.2903 -1.5681 0.6641 19 6 2.0775 -0.7916 1.2101 20 1 1.3228 -1.4830 1.5850 21 7 2.4983 0.1294 2.2742 22 6 2.5206 -0.5474 3.5778 23 6 2.9565 0.4265 4.6421 24 7 4.2066 0.6560 5.0442 25 7 4.1552 1.5581 5.9649 26 7 2.9244 1.8873 6.1528 27 6 2.4483 2.8782 7.1211 28 7 2.1786 1.2055 5.3529 29 1 -0.3633 0.4635 0.9172 30 1 -0.3634 0.5626 -0.8600 31 1 -0.3634 -1.0261 -0.0572 32 1 2.1524 -0.1480 -2.0870 33 1 1.4612 -1.6602 -1.4143 34 1 4.1891 0.2016 -3.0253 35 1 3.8334 -1.4796 -3.4890 36 1 8.8201 -0.7519 -6.5416 37 1 3.1178 -2.6402 0.7586 38 1 4.1909 -1.2876 1.2103 39 1 3.3962 0.5388 2.0640 40 1 1.5228 -0.9189 3.8115 41 1 3.2201 -1.3826 3.5417 42 1 2.2417 2.3870 8.0720 43 1 3.2126 3.6419 7.2652 44 1 1.5363 3.3431 6.7466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214167981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:52 Heat of formation + Delta-G solvation = 105.044337 kcal Electronic energy + Delta-G solvation = -26348.452298 eV Core-core repulsion = 22465.717288 eV Total energy + Delta-G solvation = -3882.735010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.64157 -40.08727 -37.94750 -36.08575 -34.96031 -33.36608 -32.52802 -32.40724 -30.31859 -29.30750 -27.88221 -26.41612 -25.90665 -25.39180 -23.45055 -22.83968 -22.22185 -20.46789 -19.36737 -17.90673 -17.81554 -17.66223 -16.76273 -16.43057 -15.95290 -15.22239 -15.18018 -14.78963 -14.58246 -14.40141 -14.11143 -13.95145 -13.84360 -13.71184 -13.50026 -13.16070 -13.01574 -12.65049 -12.54665 -12.38545 -12.09271 -12.07824 -11.79868 -11.37805 -11.29573 -11.25158 -11.20968 -11.02690 -11.02599 -10.95226 -10.74757 -10.49728 -9.81035 -9.41762 -9.04786 -9.01709 -8.43151 -8.21948 -6.48682 -6.19841 -3.90647 0.89130 1.58123 1.79738 2.89380 3.06842 3.24652 3.26567 3.30253 3.41485 3.61629 3.80147 3.98855 4.21596 4.30470 4.34572 4.36199 4.40551 4.65654 4.78470 4.91593 4.94455 5.07461 5.12375 5.15034 5.20935 5.30844 5.35661 5.38805 5.45520 5.50016 5.56053 5.62393 5.68520 5.77685 5.79224 5.89649 5.95536 6.05541 6.14672 6.33901 6.58194 6.88908 7.60600 7.69811 8.04200 8.36512 8.56816 9.25051 10.87512 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.002049 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.508645 B =13659.567972 C =14378.593984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.090 0.910 4 C 0.102 3.898 5 N -0.627 5.627 6 C 0.551 3.449 7 O -0.515 6.515 8 C -0.146 4.146 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.077 3.923 19 C 0.082 3.918 20 H 0.099 0.901 21 N -0.673 5.673 22 C 0.155 3.845 23 C 0.171 3.829 24 N -0.277 5.277 25 N -0.063 5.063 26 N -0.143 5.143 27 C 0.095 3.905 28 N -0.292 5.292 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.353 0.647 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.173 4.644 23.932 31.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.108 0.892 4 C -0.022 4.022 5 N -0.364 5.364 6 C 0.340 3.660 7 O -0.389 6.389 8 C -0.297 4.297 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.048 4.048 19 C -0.029 4.029 20 H 0.117 0.883 21 N -0.306 5.306 22 C 0.023 3.977 23 C -0.112 4.112 24 N -0.149 5.149 25 N -0.056 5.056 26 N -0.056 5.056 27 C -0.045 4.045 28 N -0.144 5.144 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.173 0.827 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.541 4.704 25.105 31.562 hybrid contribution -0.966 0.111 -1.957 2.185 sum -19.507 4.815 23.148 30.652 Atomic orbital electron populations 1.21690 0.93494 1.01909 1.02376 1.22216 0.96236 1.00174 0.92737 0.89153 1.22588 0.83147 0.98645 0.97783 1.48741 1.08603 1.68330 1.10727 1.20039 0.81515 0.76768 0.87685 1.90718 1.29441 1.46091 1.72648 1.23498 1.08241 1.04041 0.93874 1.85419 1.01690 1.87490 1.08733 1.22817 0.98006 1.51876 0.95675 0.90976 1.24997 0.94437 0.94910 0.99256 1.70015 1.00263 1.44724 1.35257 0.86221 0.77783 0.79190 0.82282 1.19938 1.20812 1.19936 1.22768 0.98912 0.99642 0.83522 1.22647 0.95985 0.93048 0.91212 0.88307 1.60596 1.36504 1.33180 1.00296 1.20140 1.02334 0.90774 0.84408 1.25433 0.86271 0.99578 0.99925 1.75903 1.21049 1.10332 1.07603 1.79014 1.03216 1.10178 1.13212 1.50088 1.02903 1.27248 1.25317 1.22435 1.03097 0.89280 0.89692 1.74700 1.24838 1.08734 1.06099 0.91799 0.92271 0.92549 0.89620 0.90876 0.89290 0.89286 0.92128 0.91533 0.90481 0.82747 0.87847 0.91279 0.88067 0.86922 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.17 37.16 0.34 -0.56 16 2 C -0.09 -0.80 3.35 -88.93 -0.30 -1.10 16 3 H 0.09 0.90 8.06 -51.94 -0.42 0.48 16 4 C 0.10 1.07 6.38 -2.31 -0.01 1.05 16 5 N -0.63 -9.00 3.29 -169.98 -0.56 -9.56 16 6 C 0.55 10.83 7.91 -10.99 -0.09 10.75 16 7 O -0.52 -12.24 16.20 5.56 0.09 -12.15 16 8 C -0.15 -3.04 5.09 36.00 0.18 -2.86 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 11 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 14 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.08 0.89 6.54 -2.98 -0.02 0.87 16 19 C 0.08 0.68 2.88 -66.34 -0.19 0.49 16 20 H 0.10 0.64 7.57 -51.93 -0.39 0.25 16 21 N -0.67 -6.04 6.21 -106.54 -0.66 -6.71 16 22 C 0.16 1.27 6.15 -4.98 -0.03 1.24 16 23 C 0.17 1.82 7.88 -156.62 -1.23 0.58 16 24 N -0.28 -3.50 12.50 32.45 0.41 -3.09 16 25 N -0.06 -0.71 13.25 60.35 0.80 0.09 16 26 N -0.14 -1.23 4.40 -16.69 -0.07 -1.30 16 27 C 0.09 0.23 11.63 59.85 0.70 0.93 16 28 N -0.29 -2.92 12.13 32.47 0.39 -2.52 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 32 H 0.09 0.91 7.23 -51.93 -0.38 0.53 16 33 H 0.07 0.66 8.02 -51.93 -0.42 0.24 16 34 H 0.09 1.72 7.90 -51.92 -0.41 1.31 16 35 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 36 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.02 7.54 -51.93 -0.39 0.63 16 39 H 0.35 3.77 8.23 -39.29 -0.32 3.45 16 40 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 42 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.11 0.10 8.14 -51.93 -0.42 -0.32 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -38.21 386.59 -7.23 -45.45 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.49 Total: -1.32 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.46 Total: -1.69 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 1.04 Total: -48.77 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.21 -7.23 -45.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214167981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.490 kcal (2) G-P(sol) polarization free energy of solvation -38.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds