Wall clock time and date at job start Sat Apr 11 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08988 * 110.65662 * 2 1 4 4 C 1.54590 * 110.98669 * 236.84432 * 2 1 3 5 5 N 1.48124 * 103.42447 * 204.37500 * 4 2 1 6 6 C 1.34776 * 127.03540 * 219.29156 * 5 4 2 7 7 O 1.21282 * 119.99940 * 179.68412 * 6 5 4 8 8 C 1.50698 * 120.00035 * 359.67527 * 6 5 4 9 9 S 1.81000 * 109.47349 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00068 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00457 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31640 * 119.99650 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00461 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46935 * 59.99953 * 14 12 10 16 16 H 1.48500 * 109.47191 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47402 * 299.99953 * 14 12 10 18 18 C 1.47482 * 105.92940 * 39.02324 * 5 4 2 19 19 C 1.54006 * 107.08610 * 334.78164 * 18 5 4 20 20 H 1.09000 * 110.32600 * 120.29566 * 19 18 5 21 21 N 1.46896 * 110.32766 * 242.41384 * 19 18 5 22 22 C 1.46900 * 110.99840 * 273.54456 * 21 19 18 23 23 C 1.50700 * 109.46984 * 179.97438 * 22 21 19 24 24 N 1.33312 * 126.55089 * 269.68998 * 23 22 21 25 25 N 1.28998 * 107.35966 * 179.83794 * 24 23 22 26 26 N 1.28783 * 108.71903 * 0.42665 * 25 24 23 27 27 C 1.46502 * 125.44657 * 179.72620 * 26 25 24 28 28 N 1.28879 * 109.10757 * 359.73223 * 26 25 24 29 29 H 1.09003 * 109.47013 * 296.80935 * 1 2 3 30 30 H 1.08999 * 109.47247 * 56.80671 * 1 2 3 31 31 H 1.09005 * 109.47376 * 176.80852 * 1 2 3 32 32 H 1.08999 * 110.62274 * 85.85890 * 4 2 1 33 33 H 1.09005 * 110.55353 * 322.85313 * 4 2 1 34 34 H 1.09001 * 109.47122 * 60.00223 * 8 6 5 35 35 H 1.09004 * 109.47371 * 300.00514 * 8 6 5 36 36 H 0.97001 * 119.99781 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.90992 * 94.14019 * 18 5 4 38 38 H 1.08998 * 109.91463 * 215.22525 * 18 5 4 39 39 H 1.00895 * 111.00023 * 37.49956 * 21 19 18 40 40 H 1.09003 * 109.47424 * 299.99863 * 22 21 19 41 41 H 1.09000 * 109.46881 * 60.00197 * 22 21 19 42 42 H 1.09003 * 109.47437 * 270.00481 * 27 26 25 43 43 H 1.09002 * 109.47345 * 30.00470 * 27 26 25 44 44 H 1.09006 * 109.46980 * 150.00493 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0198 0.0000 4 6 2.0837 -0.7894 -1.2084 5 7 3.4322 -1.2057 -0.7585 6 6 4.5593 -1.2406 -1.4965 7 8 5.6027 -1.6001 -0.9934 8 6 4.5233 -0.8329 -2.9468 9 16 6.1802 -0.9878 -3.6586 10 6 5.8548 -0.4629 -5.3087 11 1 4.8550 -0.1719 -5.5956 12 6 6.8830 -0.4242 -6.2403 13 7 8.1014 -0.7793 -5.8907 14 14 6.5379 0.1316 -7.9899 15 1 6.0160 1.5218 -7.9737 16 1 7.7936 0.0839 -8.7812 17 1 5.5298 -0.7685 -8.6055 18 6 3.2903 -1.5681 0.6641 19 6 2.0775 -0.7916 1.2101 20 1 1.3228 -1.4830 1.5850 21 7 2.4983 0.1294 2.2742 22 6 2.5206 -0.5474 3.5778 23 6 2.9565 0.4265 4.6421 24 7 4.2066 0.6560 5.0442 25 7 4.1552 1.5581 5.9649 26 7 2.9244 1.8873 6.1528 27 6 2.4483 2.8782 7.1211 28 7 2.1786 1.2055 5.3529 29 1 -0.3633 0.4635 0.9172 30 1 -0.3634 0.5626 -0.8600 31 1 -0.3634 -1.0261 -0.0572 32 1 2.1524 -0.1480 -2.0870 33 1 1.4612 -1.6602 -1.4143 34 1 4.1891 0.2016 -3.0253 35 1 3.8334 -1.4796 -3.4890 36 1 8.8201 -0.7519 -6.5416 37 1 3.1178 -2.6402 0.7586 38 1 4.1909 -1.2876 1.2103 39 1 3.3962 0.5388 2.0640 40 1 1.5228 -0.9189 3.8115 41 1 3.2201 -1.3826 3.5417 42 1 2.2417 2.3870 8.0720 43 1 3.2126 3.6419 7.2652 44 1 1.5363 3.3431 6.7466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214167981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:51 Heat of formation + Delta-G solvation = 75.226540 kcal Electronic energy + Delta-G solvation = -26349.745295 eV Core-core repulsion = 22465.717288 eV Total energy + Delta-G solvation = -3884.028007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.37034 -41.20365 -39.19835 -36.85843 -35.71132 -34.59337 -34.21064 -33.36219 -31.53765 -30.09096 -28.76849 -27.68980 -27.19980 -26.69016 -24.12588 -23.65745 -22.96521 -21.22616 -20.76665 -19.60303 -18.51911 -18.45016 -18.09391 -17.38277 -16.91289 -16.88700 -16.54123 -16.26452 -15.74845 -15.25350 -15.17742 -15.02733 -14.66847 -14.51705 -14.29401 -14.18318 -13.88458 -13.60500 -13.50482 -13.36108 -13.24748 -13.14855 -12.90931 -12.86502 -12.71368 -12.63258 -12.11226 -12.03453 -12.00427 -11.90105 -11.78481 -11.59186 -11.17340 -11.13387 -10.98089 -10.29653 -9.98042 -9.42006 -8.69364 -8.34997 -6.14273 0.16493 0.99575 1.13907 1.22599 1.43941 1.44138 1.54399 1.54681 2.05896 2.26889 2.74495 2.98862 3.13038 3.23002 3.30425 3.52980 3.56786 3.91267 3.99749 4.12634 4.15006 4.23888 4.24465 4.28684 4.37889 4.42491 4.52598 4.57747 4.59319 4.69206 4.69587 4.73053 4.78922 4.82263 4.95445 5.17734 5.20165 5.24772 5.36581 5.40539 5.52509 5.88844 6.05830 6.18873 6.39594 7.05583 7.09638 7.28873 8.74085 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.002049 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.508645 B =13659.567972 C =14378.593984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 H 0.075 0.925 4 C 0.094 3.906 5 N -0.618 5.618 6 C 0.548 3.452 7 O -0.570 6.570 8 C -0.118 4.118 9 S -0.153 6.153 10 C -0.546 4.546 11 H 0.084 0.916 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.260 1.260 18 C 0.072 3.928 19 C 0.096 3.904 20 H 0.132 0.868 21 N -0.673 5.673 22 C 0.157 3.843 23 C 0.163 3.837 24 N -0.317 5.317 25 N -0.085 5.085 26 N -0.128 5.128 27 C 0.077 3.923 28 N -0.298 5.298 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.340 0.660 40 H 0.128 0.872 41 H 0.070 0.930 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.085 5.316 24.044 34.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.028 4.028 5 N -0.353 5.353 6 C 0.336 3.664 7 O -0.449 6.449 8 C -0.269 4.269 9 S 0.074 5.926 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.186 1.186 16 H -0.204 1.204 17 H -0.185 1.185 18 C -0.052 4.052 19 C -0.015 4.015 20 H 0.149 0.851 21 N -0.303 5.303 22 C 0.025 3.975 23 C -0.120 4.120 24 N -0.188 5.188 25 N -0.078 5.078 26 N -0.043 5.043 27 C -0.060 4.060 28 N -0.150 5.150 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.088 0.912 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.525 5.390 25.258 34.270 hybrid contribution 0.105 -0.036 -1.791 1.794 sum -22.420 5.354 23.467 32.895 Atomic orbital electron populations 1.21647 0.91203 1.03108 1.02759 1.22163 0.97837 0.98901 0.91635 0.90683 1.22968 0.81088 1.00038 0.98686 1.48671 1.08635 1.66250 1.11744 1.19783 0.82276 0.76871 0.87478 1.90694 1.31772 1.48972 1.73429 1.23285 1.03440 1.05496 0.94712 1.85622 1.08564 1.88001 1.10391 1.23158 0.98710 1.51879 0.95639 0.89816 1.26172 0.93988 0.94645 1.04460 1.70191 1.01514 1.46048 1.37048 0.84978 0.77957 0.79227 0.75674 1.18610 1.20393 1.18480 1.23050 0.99627 1.01028 0.81509 1.22691 0.94870 0.92985 0.90960 0.85059 1.60649 1.35620 1.33260 1.00815 1.20290 1.03619 0.90137 0.83407 1.25824 0.85799 0.99994 1.00404 1.75858 1.22542 1.11605 1.08812 1.78929 1.04525 1.10712 1.13671 1.50630 1.02146 1.26703 1.24804 1.23043 1.04387 0.88954 0.89610 1.74671 1.24954 1.08967 1.06428 0.91456 0.91913 0.90917 0.89674 0.88221 0.87680 0.87389 0.91977 0.90193 0.92777 0.84198 0.85379 0.91196 0.85658 0.85256 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.17 71.98 0.66 -0.53 16 2 C -0.09 -1.23 3.35 -9.70 -0.03 -1.26 16 3 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 4 C 0.09 1.72 6.38 86.61 0.55 2.27 16 5 N -0.62 -17.21 3.29 -810.08 -2.67 -19.88 16 6 C 0.55 21.86 7.91 87.66 0.69 22.55 16 7 O -0.57 -28.37 16.20 -3.04 -0.05 -28.42 16 8 C -0.12 -4.94 5.09 71.24 0.36 -4.57 16 9 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 10 C -0.55 -31.69 9.50 67.95 0.65 -31.05 16 11 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 12 C 0.01 0.70 5.49 84.86 0.47 1.16 16 13 N -0.91 -56.91 13.22 21.65 0.29 -56.62 16 14 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 C 0.07 1.60 6.54 86.53 0.57 2.17 16 19 C 0.10 1.36 2.88 45.81 0.13 1.49 16 20 H 0.13 1.11 7.57 -2.39 -0.02 1.10 16 21 N -0.67 -11.15 6.21 -490.98 -3.05 -14.20 16 22 C 0.16 2.35 6.15 85.56 0.53 2.87 16 23 C 0.16 3.37 7.88 138.55 1.09 4.47 16 24 N -0.32 -8.19 12.50 -51.26 -0.64 -8.83 16 25 N -0.09 -1.93 13.25 37.02 0.49 -1.44 16 26 N -0.13 -2.06 4.40 -206.71 -0.91 -2.97 16 27 C 0.08 0.23 11.63 127.77 1.49 1.71 16 28 N -0.30 -5.57 12.13 -51.20 -0.62 -6.19 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.47 8.11 -2.38 -0.02 0.45 16 32 H 0.08 1.60 7.23 -2.39 -0.02 1.58 16 33 H 0.10 1.39 8.02 -2.38 -0.02 1.37 16 34 H 0.10 4.01 7.90 -2.39 -0.02 3.99 16 35 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 36 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.47 7.54 -2.39 -0.02 1.46 16 39 H 0.34 7.30 8.23 -89.70 -0.74 6.57 16 40 H 0.13 1.26 8.08 -2.39 -0.02 1.24 16 41 H 0.07 1.04 8.11 -2.39 -0.02 1.02 16 42 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.13 -0.04 8.14 -2.39 -0.02 -0.05 16 44 H 0.13 -0.08 8.14 -2.38 -0.02 -0.10 16 Total: -1.00 -87.92 386.59 1.14 -86.78 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.28 Total: 14.41 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 7.15 Total: 1.28 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -7.11 Total: -110.13 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -87.92 1.14 -86.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214167981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.011 kcal (2) G-P(sol) polarization free energy of solvation -87.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds