Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 110.91467 * 2 1 4 4 C 1.55126 * 111.16087 * 236.06938 * 2 1 3 5 5 N 1.47428 * 104.93920 * 205.13231 * 4 2 1 6 6 C 1.34775 * 125.64891 * 204.03976 * 5 4 2 7 7 O 1.21273 * 120.00119 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.99576 * 359.95844 * 6 5 4 9 9 H 1.09003 * 110.50994 * 317.25665 * 8 6 5 10 10 C 1.54088 * 110.56639 * 80.00105 * 8 6 5 11 11 O 1.45707 * 104.01064 * 118.57094 * 10 8 6 12 12 C 1.33767 * 109.47331 * 359.97438 * 11 10 8 13 13 O 1.21515 * 123.07062 * 180.02562 * 12 11 10 14 14 N 1.34004 * 113.86048 * 0.02562 * 12 11 10 15 15 C 1.47020 * 108.70508 * 24.00405 * 5 4 2 16 16 C 1.54331 * 107.27187 * 358.94022 * 15 5 4 17 17 H 1.08998 * 110.71838 * 96.34717 * 16 15 5 18 18 N 1.46898 * 110.72153 * 219.44590 * 16 15 5 19 19 C 1.46906 * 110.99888 * 271.15692 * 18 16 15 20 20 C 1.50699 * 109.47140 * 179.97438 * 19 18 16 21 21 O 1.21289 * 119.99678 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99614 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99518 * 180.02562 * 22 20 19 24 24 H 1.08003 * 120.00058 * 359.97438 * 23 22 20 25 25 C 1.38949 * 120.00085 * 179.97438 * 23 22 20 26 26 N 1.31416 * 119.99807 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00409 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47138 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47229 * 119.99992 * 27 25 23 30 30 H 1.48497 * 109.47429 * 239.99972 * 27 25 23 31 31 H 1.08995 * 109.46940 * 296.09951 * 1 2 3 32 32 H 1.09001 * 109.46573 * 56.09904 * 1 2 3 33 33 H 1.09000 * 109.46872 * 176.09725 * 1 2 3 34 34 H 1.08997 * 110.41573 * 86.20654 * 4 2 1 35 35 H 1.08994 * 110.20658 * 323.95226 * 4 2 1 36 36 H 1.08997 * 110.52408 * 237.20365 * 10 8 6 37 37 H 1.08998 * 110.52242 * 359.94054 * 10 8 6 38 38 H 0.96997 * 125.56120 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.88672 * 239.52741 * 15 5 4 40 40 H 1.08999 * 109.88110 * 118.35599 * 15 5 4 41 41 H 1.00904 * 110.99913 * 35.10758 * 18 16 15 42 42 H 1.09004 * 109.47040 * 299.99934 * 19 18 16 43 43 H 1.09000 * 109.47033 * 59.99886 * 19 18 16 44 44 H 0.96996 * 120.00269 * 359.97438 * 22 20 19 45 45 H 0.97002 * 120.00022 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0901 -0.8075 -1.2003 5 7 3.4299 -1.2475 -0.7704 6 6 4.4516 -1.5678 -1.5889 7 8 5.5150 -1.9181 -1.1229 8 6 4.2725 -1.4909 -3.0832 9 1 3.3060 -1.9028 -3.3737 10 6 4.4091 -0.0356 -3.5707 11 8 5.5526 -0.0716 -4.4730 12 6 6.0346 -1.3180 -4.5324 13 8 6.9917 -1.6270 -5.2144 14 7 5.3656 -2.1948 -3.7712 15 6 3.4672 -1.2781 0.6990 16 6 2.0861 -0.8079 1.2023 17 1 1.4451 -1.6613 1.4230 18 7 2.2290 0.0520 2.3847 19 6 2.2280 -0.7452 3.6186 20 6 2.3767 0.1689 4.8074 21 8 2.4734 1.3667 4.6429 22 7 2.4022 -0.3446 6.0533 23 6 2.5369 0.4871 7.1348 24 1 2.6230 1.5537 6.9884 25 6 2.5627 -0.0421 8.4193 26 7 2.4574 -1.3399 8.5974 27 14 2.7470 1.0909 9.8929 28 1 2.8450 2.4975 9.4266 29 1 1.5651 0.9453 10.7801 30 1 3.9767 0.7309 10.6434 31 1 -0.3633 0.4521 0.9228 32 1 -0.3632 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1643 -0.1734 -2.0837 35 1 1.4547 -1.6695 -1.4033 36 1 3.5108 0.2746 -4.1045 37 1 4.6055 0.6316 -2.7314 38 1 5.5694 -3.1394 -3.6871 39 1 4.2434 -0.6057 1.0642 40 1 3.6613 -2.2937 1.0437 41 1 3.0613 0.6189 2.3211 42 1 1.2890 -1.2932 3.6964 43 1 3.0593 -1.4500 3.5965 44 1 2.3245 -1.3024 6.1847 45 1 2.4757 -1.7094 9.4941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214542207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = -126.933225 kcal Electronic energy + Delta-G solvation = -29400.521668 eV Core-core repulsion = 25032.681733 eV Total energy + Delta-G solvation = -4367.839934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.31806 -40.46387 -38.71657 -38.00261 -37.53372 -35.18629 -34.96595 -33.90303 -32.83389 -31.29291 -30.84230 -28.94281 -26.89565 -26.46964 -25.05860 -24.03368 -22.88777 -22.42581 -20.82450 -20.24344 -19.30981 -18.69635 -18.28972 -17.95811 -17.40107 -17.04233 -16.50762 -16.15043 -15.53746 -15.38923 -15.17962 -14.89908 -14.76675 -14.60406 -14.41837 -14.09597 -13.91628 -13.81845 -13.61867 -13.38534 -13.08618 -12.85971 -12.63127 -12.36230 -12.31454 -11.78045 -11.60860 -11.49563 -11.37635 -11.25871 -11.16096 -11.11232 -10.98358 -10.79751 -10.38430 -10.27816 -9.82218 -9.57918 -9.21369 -8.58852 -8.24116 -8.02745 -6.47468 -3.88474 1.84339 1.94122 2.23506 2.42795 2.99588 3.12552 3.23823 3.30671 3.41573 3.60669 3.82320 3.91850 4.00068 4.06732 4.18335 4.29052 4.42293 4.57934 4.64157 4.74858 4.82466 4.88745 4.96483 5.04303 5.19213 5.22878 5.35034 5.42479 5.50972 5.62079 5.69149 5.70834 5.85471 5.92661 6.07888 6.17698 6.22900 6.68602 6.88002 7.00470 7.40948 7.48616 7.50189 7.61124 7.99917 8.54068 9.11910 9.47350 9.97950 10.70126 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.001961 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.653045 B =14271.760416 C =14906.948189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.094 0.906 4 C 0.093 3.907 5 N -0.609 5.609 6 C 0.514 3.486 7 O -0.516 6.516 8 C 0.081 3.919 9 H 0.128 0.872 10 C 0.054 3.946 11 O -0.321 6.321 12 C 0.652 3.348 13 O -0.515 6.515 14 N -0.710 5.710 15 C 0.076 3.924 16 C 0.081 3.919 17 H 0.097 0.903 18 N -0.650 5.650 19 C 0.048 3.952 20 C 0.439 3.561 21 O -0.584 6.584 22 N -0.562 5.562 23 C -0.300 4.300 24 H 0.104 0.896 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.930 3.070 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.281 1.281 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.441 0.559 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.353 0.647 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 -3.579 -23.672 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.112 0.888 4 C -0.030 4.030 5 N -0.344 5.344 6 C 0.299 3.701 7 O -0.390 6.390 8 C -0.030 4.030 9 H 0.146 0.854 10 C -0.021 4.021 11 O -0.231 6.231 12 C 0.404 3.596 13 O -0.399 6.399 14 N -0.383 5.383 15 C -0.048 4.048 16 C -0.031 4.031 17 H 0.115 0.885 18 N -0.282 5.282 19 C -0.085 4.085 20 C 0.224 3.776 21 O -0.468 6.468 22 N -0.198 5.198 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.757 3.243 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.207 1.207 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.285 0.715 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.174 0.826 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.817 -2.703 -23.838 24.469 hybrid contribution 0.819 -1.151 1.199 1.853 sum -3.998 -3.853 -22.639 23.310 Atomic orbital electron populations 1.21644 0.92898 1.01863 1.03038 1.22394 0.96980 0.99746 0.91968 0.88798 1.22714 0.82784 0.98846 0.98618 1.48381 1.12373 1.66340 1.07294 1.20219 0.83471 0.78555 0.87826 1.90812 1.25627 1.45985 1.76613 1.22262 0.94400 0.94960 0.91351 0.85445 1.24274 0.89304 0.94439 0.94127 1.87322 1.45413 1.28081 1.62243 1.18413 0.81987 0.79499 0.79708 1.91108 1.26226 1.77926 1.44621 1.45674 1.32859 1.12827 1.46970 1.23029 0.99999 1.02702 0.79104 1.22803 0.93586 0.95647 0.91025 0.88505 1.60189 1.46791 1.21944 0.99251 1.21763 1.01617 0.95190 0.89919 1.19742 0.84811 0.89030 0.83986 1.90532 1.55442 1.15481 1.85340 1.41869 1.63496 1.10004 1.04466 1.19751 1.46899 0.92491 0.83772 0.87819 1.25280 0.97254 0.96336 0.99096 1.69618 1.50238 1.10819 1.23499 0.85792 0.77786 0.80154 0.80573 1.19186 1.20715 1.20734 0.90726 0.92507 0.92681 0.90365 0.90378 0.85971 0.87055 0.71484 0.90762 0.90946 0.82562 0.89330 0.93621 0.77449 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.32 37.16 0.35 -0.47 16 2 C -0.09 -0.60 3.33 -88.35 -0.29 -0.89 16 3 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.09 0.39 5.97 -2.41 -0.01 0.37 16 5 N -0.61 -4.49 3.33 -170.38 -0.57 -5.06 16 6 C 0.51 4.52 6.97 -10.99 -0.08 4.44 16 7 O -0.52 -7.09 16.89 5.56 0.09 -7.00 16 8 C 0.08 0.43 3.37 -68.19 -0.23 0.20 16 9 H 0.13 0.19 7.83 -51.93 -0.41 -0.21 16 10 C 0.05 0.25 7.13 37.73 0.27 0.52 16 11 O -0.32 -3.05 11.09 -37.82 -0.42 -3.47 16 12 C 0.65 7.28 9.16 53.71 0.49 7.78 16 13 O -0.52 -7.85 18.04 -19.12 -0.34 -8.19 16 14 N -0.71 -5.55 5.63 -59.35 -0.33 -5.88 16 15 C 0.08 0.72 6.57 -3.06 -0.02 0.70 16 16 C 0.08 0.73 2.72 -65.88 -0.18 0.55 16 17 H 0.10 0.81 7.75 -51.93 -0.40 0.41 16 18 N -0.65 -8.63 5.99 -106.05 -0.64 -9.27 16 19 C 0.05 0.74 6.03 -4.97 -0.03 0.71 16 20 C 0.44 9.74 7.82 -10.99 -0.09 9.65 16 21 O -0.58 -15.07 15.78 5.55 0.09 -14.98 16 22 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 23 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 24 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 27 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 34 H 0.08 0.12 7.03 -51.93 -0.37 -0.25 16 35 H 0.08 0.22 7.98 -51.93 -0.41 -0.19 16 36 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 37 H 0.11 0.51 7.72 -51.93 -0.40 0.11 16 38 H 0.44 2.94 8.96 -40.82 -0.37 2.58 16 39 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.35 5.08 7.80 -39.29 -0.31 4.77 16 42 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -37.01 380.51 -7.07 -44.08 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.26 Total: 9.65 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: -0.06 Total: 15.75 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.87 Total: -57.21 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.58 Total: -33.64 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.01 -7.07 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214542207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.857 kcal (2) G-P(sol) polarization free energy of solvation -37.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds