Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 110.91467 * 2 1 4 4 C 1.55126 * 111.16087 * 236.06938 * 2 1 3 5 5 N 1.47428 * 104.93920 * 205.13231 * 4 2 1 6 6 C 1.34775 * 125.64891 * 204.03976 * 5 4 2 7 7 O 1.21273 * 120.00119 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.99576 * 359.95844 * 6 5 4 9 9 H 1.09003 * 110.50994 * 317.25665 * 8 6 5 10 10 C 1.54088 * 110.56639 * 80.00105 * 8 6 5 11 11 O 1.45707 * 104.01064 * 118.57094 * 10 8 6 12 12 C 1.33767 * 109.47331 * 359.97438 * 11 10 8 13 13 O 1.21515 * 123.07062 * 180.02562 * 12 11 10 14 14 N 1.34004 * 113.86048 * 0.02562 * 12 11 10 15 15 C 1.47020 * 108.70508 * 24.00405 * 5 4 2 16 16 C 1.54331 * 107.27187 * 358.94022 * 15 5 4 17 17 H 1.08998 * 110.71838 * 96.34717 * 16 15 5 18 18 N 1.46898 * 110.72153 * 219.44590 * 16 15 5 19 19 C 1.46906 * 110.99888 * 271.15692 * 18 16 15 20 20 C 1.50699 * 109.47140 * 179.97438 * 19 18 16 21 21 O 1.21289 * 119.99678 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99614 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99518 * 180.02562 * 22 20 19 24 24 H 1.08003 * 120.00058 * 359.97438 * 23 22 20 25 25 C 1.38949 * 120.00085 * 179.97438 * 23 22 20 26 26 N 1.31416 * 119.99807 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00409 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47138 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47229 * 119.99992 * 27 25 23 30 30 H 1.48497 * 109.47429 * 239.99972 * 27 25 23 31 31 H 1.08995 * 109.46940 * 296.09951 * 1 2 3 32 32 H 1.09001 * 109.46573 * 56.09904 * 1 2 3 33 33 H 1.09000 * 109.46872 * 176.09725 * 1 2 3 34 34 H 1.08997 * 110.41573 * 86.20654 * 4 2 1 35 35 H 1.08994 * 110.20658 * 323.95226 * 4 2 1 36 36 H 1.08997 * 110.52408 * 237.20365 * 10 8 6 37 37 H 1.08998 * 110.52242 * 359.94054 * 10 8 6 38 38 H 0.96997 * 125.56120 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.88672 * 239.52741 * 15 5 4 40 40 H 1.08999 * 109.88110 * 118.35599 * 15 5 4 41 41 H 1.00904 * 110.99913 * 35.10758 * 18 16 15 42 42 H 1.09004 * 109.47040 * 299.99934 * 19 18 16 43 43 H 1.09000 * 109.47033 * 59.99886 * 19 18 16 44 44 H 0.96996 * 120.00269 * 359.97438 * 22 20 19 45 45 H 0.97002 * 120.00022 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0901 -0.8075 -1.2003 5 7 3.4299 -1.2475 -0.7704 6 6 4.4516 -1.5678 -1.5889 7 8 5.5150 -1.9181 -1.1229 8 6 4.2725 -1.4909 -3.0832 9 1 3.3060 -1.9028 -3.3737 10 6 4.4091 -0.0356 -3.5707 11 8 5.5526 -0.0716 -4.4730 12 6 6.0346 -1.3180 -4.5324 13 8 6.9917 -1.6270 -5.2144 14 7 5.3656 -2.1948 -3.7712 15 6 3.4672 -1.2781 0.6990 16 6 2.0861 -0.8079 1.2023 17 1 1.4451 -1.6613 1.4230 18 7 2.2290 0.0520 2.3847 19 6 2.2280 -0.7452 3.6186 20 6 2.3767 0.1689 4.8074 21 8 2.4734 1.3667 4.6429 22 7 2.4022 -0.3446 6.0533 23 6 2.5369 0.4871 7.1348 24 1 2.6230 1.5537 6.9884 25 6 2.5627 -0.0421 8.4193 26 7 2.4574 -1.3399 8.5974 27 14 2.7470 1.0909 9.8929 28 1 2.8450 2.4975 9.4266 29 1 1.5651 0.9453 10.7801 30 1 3.9767 0.7309 10.6434 31 1 -0.3633 0.4521 0.9228 32 1 -0.3632 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1643 -0.1734 -2.0837 35 1 1.4547 -1.6695 -1.4033 36 1 3.5108 0.2746 -4.1045 37 1 4.6055 0.6316 -2.7314 38 1 5.5694 -3.1394 -3.6871 39 1 4.2434 -0.6057 1.0642 40 1 3.6613 -2.2937 1.0437 41 1 3.0613 0.6189 2.3211 42 1 1.2890 -1.2932 3.6964 43 1 3.0593 -1.4500 3.5965 44 1 2.3245 -1.3024 6.1847 45 1 2.4757 -1.7094 9.4941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214542207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = -160.226450 kcal Electronic energy + Delta-G solvation = -29401.965370 eV Core-core repulsion = 25032.681733 eV Total energy + Delta-G solvation = -4369.283637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.95936 -41.16910 -40.15285 -39.12190 -38.38114 -36.23799 -35.82842 -35.58147 -33.54617 -33.22991 -31.48051 -29.82440 -27.83394 -27.32662 -26.11336 -25.20956 -23.59703 -23.15867 -21.58434 -20.96222 -20.83238 -19.91347 -19.30660 -18.88200 -18.13704 -17.86707 -17.53651 -17.22695 -16.79194 -16.35231 -16.25196 -16.03830 -15.80415 -15.53760 -15.36854 -15.26380 -14.91895 -14.63419 -14.47452 -14.20929 -14.03022 -13.56058 -13.54142 -13.39576 -13.32213 -13.22621 -12.93085 -12.79270 -12.41620 -12.15824 -12.12566 -12.07401 -11.96358 -11.82799 -11.59600 -11.54318 -11.52171 -10.46509 -10.34807 -10.02370 -9.85076 -9.36506 -8.47992 -5.96421 1.20253 1.27678 1.35745 1.41472 1.55220 1.57863 1.76463 2.04583 2.28083 2.49334 2.86894 3.00114 3.13302 3.19573 3.44358 3.55438 3.64574 3.73692 3.96876 4.02994 4.14854 4.30463 4.33537 4.38343 4.40949 4.46409 4.56178 4.60481 4.69812 4.77024 4.83268 4.97250 5.07558 5.22129 5.39968 5.41888 5.59956 5.60688 5.88448 6.02293 6.08353 6.27248 6.33215 6.58752 6.80450 6.90559 7.11877 7.55603 8.10568 8.69481 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.001961 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.653045 B =14271.760416 C =14906.948189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 H 0.082 0.918 4 C 0.094 3.906 5 N -0.602 5.602 6 C 0.511 3.489 7 O -0.578 6.578 8 C 0.089 3.911 9 H 0.184 0.816 10 C 0.048 3.952 11 O -0.338 6.338 12 C 0.648 3.352 13 O -0.570 6.570 14 N -0.702 5.702 15 C 0.078 3.922 16 C 0.083 3.917 17 H 0.111 0.889 18 N -0.660 5.660 19 C 0.063 3.937 20 C 0.437 3.563 21 O -0.623 6.623 22 N -0.574 5.574 23 C -0.332 4.332 24 H 0.079 0.921 25 C -0.014 4.014 26 N -0.920 5.920 27 Si 0.992 3.008 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.273 1.273 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.177 0.823 37 H 0.110 0.890 38 H 0.445 0.555 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.344 0.656 42 H 0.112 0.888 43 H 0.062 0.938 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 -4.036 -25.283 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 H 0.100 0.900 4 C -0.027 4.027 5 N -0.335 5.335 6 C 0.298 3.702 7 O -0.456 6.456 8 C -0.020 4.020 9 H 0.201 0.799 10 C -0.026 4.026 11 O -0.247 6.247 12 C 0.401 3.599 13 O -0.458 6.458 14 N -0.374 5.374 15 C -0.047 4.047 16 C -0.028 4.028 17 H 0.129 0.871 18 N -0.291 5.291 19 C -0.069 4.069 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.211 5.211 23 C -0.461 4.461 24 H 0.097 0.903 25 C -0.214 4.214 26 N -0.561 5.561 27 Si 0.816 3.184 28 H -0.198 1.198 29 H -0.195 1.195 30 H -0.198 1.198 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.194 0.806 37 H 0.128 0.872 38 H 0.289 0.711 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.163 0.837 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.365 -3.173 -25.449 26.683 hybrid contribution 1.517 -0.956 1.720 2.485 sum -5.848 -4.129 -23.729 24.785 Atomic orbital electron populations 1.21603 0.92076 1.02912 1.02403 1.22374 0.97514 0.99172 0.91658 0.89968 1.23020 0.80840 1.00280 0.98574 1.48411 1.13529 1.65381 1.06172 1.20897 0.82598 0.77354 0.89365 1.90796 1.28062 1.48891 1.77899 1.22608 0.95607 0.95581 0.88176 0.79949 1.24813 0.89638 0.93891 0.94229 1.87285 1.47134 1.27143 1.63163 1.18573 0.81575 0.80183 0.79549 1.91053 1.28643 1.79049 1.47064 1.45691 1.32975 1.12779 1.45958 1.22823 0.99462 1.01493 0.80924 1.22933 0.93587 0.96034 0.90218 0.87145 1.60240 1.46359 1.22679 0.99850 1.21616 1.03351 0.93936 0.87994 1.20913 0.82228 0.89435 0.84977 1.90498 1.56542 1.17788 1.86145 1.41950 1.64418 1.09912 1.04850 1.19685 1.49028 0.91942 0.85488 0.90328 1.26033 0.96448 0.97831 1.01071 1.69674 1.50236 1.11795 1.24396 0.84883 0.78270 0.77925 0.77347 1.19782 1.19540 1.19795 0.93751 0.90414 0.91164 0.86384 0.87433 0.80588 0.87174 0.71079 0.93353 0.91830 0.83660 0.87050 0.91971 0.76967 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.32 71.98 0.67 -0.45 16 2 C -0.09 -0.86 3.33 -9.32 -0.03 -0.89 16 3 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.09 0.29 5.97 86.93 0.52 0.81 16 5 N -0.60 -7.17 3.33 -811.37 -2.70 -9.87 16 6 C 0.51 7.88 6.97 87.66 0.61 8.49 16 7 O -0.58 -15.93 16.89 -3.01 -0.05 -15.98 16 8 C 0.09 0.60 3.37 44.50 0.15 0.75 16 9 H 0.18 -0.69 7.83 -2.39 -0.02 -0.71 16 10 C 0.05 0.26 7.13 72.35 0.52 0.77 16 11 O -0.34 -5.87 11.09 -47.28 -0.52 -6.39 16 12 C 0.65 14.17 9.16 129.91 1.19 15.36 16 13 O -0.57 -17.96 18.04 19.64 0.35 -17.60 16 14 N -0.70 -9.82 5.63 -573.41 -3.23 -13.04 16 15 C 0.08 1.41 6.57 86.73 0.57 1.98 16 16 C 0.08 1.34 2.72 46.11 0.13 1.46 16 17 H 0.11 1.52 7.75 -2.39 -0.02 1.50 16 18 N -0.66 -17.23 5.99 -489.42 -2.93 -20.17 16 19 C 0.06 1.93 6.03 85.56 0.52 2.44 16 20 C 0.44 19.79 7.82 87.66 0.69 20.48 16 21 O -0.62 -33.26 15.78 -3.06 -0.05 -33.31 16 22 N -0.57 -28.62 5.29 -306.99 -1.62 -30.25 16 23 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 24 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 25 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 26 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 27 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 30 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.40 8.08 -2.39 -0.02 0.38 16 34 H 0.12 -0.48 7.03 -2.39 -0.02 -0.50 16 35 H 0.11 -0.14 7.98 -2.39 -0.02 -0.16 16 36 H 0.18 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H 0.11 0.65 7.72 -2.39 -0.02 0.63 16 38 H 0.44 5.49 8.96 -92.71 -0.83 4.66 16 39 H 0.05 1.12 7.53 -2.39 -0.02 1.11 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.34 10.11 7.80 -89.69 -0.70 9.41 16 42 H 0.11 2.92 8.08 -2.38 -0.02 2.90 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 45 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -87.89 380.51 -2.84 -90.73 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -1.20 Total: 26.87 kcal Atomic # 6 Polarization: 26.38 SS G_CDS: 6.80 Total: 33.18 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -10.20 Total: -122.05 kcal Atomic # 8 Polarization: -73.02 SS G_CDS: -0.27 Total: -73.29 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -87.89 -2.84 -90.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214542207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.497 kcal (2) G-P(sol) polarization free energy of solvation -87.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds