Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.36722 * 2 1 4 4 C 1.54379 * 110.41442 * 237.51843 * 2 1 3 5 5 H 1.09000 * 110.32200 * 336.37240 * 4 2 1 6 6 N 1.46497 * 110.32113 * 98.47279 * 4 2 1 7 7 C 1.34783 * 120.00259 * 205.00273 * 6 4 2 8 8 O 1.21284 * 119.99264 * 0.02562 * 7 6 4 9 9 C 1.50691 * 120.00608 * 180.02562 * 7 6 4 10 10 S 1.81003 * 109.47597 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00195 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99889 * 0.02562 * 11 10 9 13 13 C 1.38799 * 119.99800 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99950 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99554 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47736 * 59.99566 * 15 13 11 17 17 H 1.48503 * 109.46869 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47209 * 299.99261 * 15 13 11 19 19 C 1.54259 * 105.06460 * 217.36951 * 4 2 1 20 20 C 1.54386 * 105.05829 * 0.02562 * 19 4 2 21 21 N 1.48558 * 110.41062 * 122.34797 * 2 1 3 22 22 C 1.46906 * 111.00058 * 277.81794 * 21 2 1 23 23 C 1.50701 * 109.46965 * 169.99976 * 22 21 2 24 24 N 1.31066 * 126.66095 * 90.02992 * 23 22 21 25 25 N 1.28841 * 107.99466 * 179.97438 * 24 23 22 26 26 N 1.28744 * 109.39592 * 359.97438 * 25 24 23 27 27 N 1.29024 * 108.80565 * 359.74617 * 26 25 24 28 28 C 1.46500 * 126.43720 * 180.24690 * 27 26 25 29 29 H 1.09002 * 109.46854 * 299.11033 * 1 2 3 30 30 H 1.08999 * 109.46990 * 59.10829 * 1 2 3 31 31 H 1.09002 * 109.46882 * 179.10397 * 1 2 3 32 32 H 0.96995 * 120.00385 * 25.00404 * 6 4 2 33 33 H 1.09000 * 109.47429 * 300.00311 * 9 7 6 34 34 H 1.09002 * 109.46912 * 59.99598 * 9 7 6 35 35 H 0.96995 * 119.99559 * 180.02562 * 14 13 11 36 36 H 1.08996 * 110.32374 * 118.89333 * 19 4 2 37 37 H 1.08996 * 110.32290 * 241.00569 * 19 4 2 38 38 H 1.08996 * 110.40505 * 265.07372 * 20 19 4 39 39 H 1.08992 * 110.41287 * 142.63152 * 20 19 4 40 40 H 1.08993 * 109.47164 * 289.99919 * 22 21 2 41 41 H 1.08996 * 109.46920 * 49.99953 * 22 21 2 42 42 H 1.08996 * 109.47073 * 270.17622 * 28 27 26 43 43 H 1.08995 * 109.47083 * 30.18310 * 28 27 26 44 44 H 1.08999 * 109.46711 * 150.17986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0685 -0.7770 -1.2205 5 1 1.3229 -1.4885 -1.5753 6 7 2.4356 0.1511 -2.2929 7 6 2.4425 -0.2679 -3.5739 8 8 2.1443 -1.4133 -3.8387 9 6 2.8208 0.6865 -4.6770 10 16 2.7357 -0.1683 -6.2702 11 6 3.2128 1.1425 -7.3466 12 1 3.4488 2.1153 -6.9413 13 6 3.2855 0.9248 -8.7155 14 7 2.9984 -0.2611 -9.2094 15 14 3.7920 2.3143 -9.8565 16 1 5.1547 2.7804 -9.4946 17 1 3.7923 1.8274 -11.2595 18 1 2.8322 3.4394 -9.7228 19 6 3.3178 -1.5197 -0.7036 20 6 3.4287 -1.1295 0.7860 21 7 2.0481 -0.7450 1.1762 22 6 2.0569 0.1041 2.3751 23 6 2.3503 -0.7416 3.5874 24 7 3.5318 -1.0085 4.0881 25 7 3.3657 -1.7606 5.1209 26 7 2.1088 -1.9800 5.2924 27 7 1.4494 -1.3639 4.3703 28 6 -0.0061 -1.3482 4.2041 29 1 -0.3633 0.5000 0.8979 30 1 -0.3633 0.5276 -0.8819 31 1 -0.3633 -1.0276 -0.0161 32 1 2.6738 1.0672 -2.0811 33 1 2.1309 1.5304 -4.6797 34 1 3.8359 1.0478 -4.5126 35 1 3.0495 -0.4133 -10.1660 36 1 3.1861 -2.5971 -0.8035 37 1 4.2039 -1.1950 -1.2490 38 1 4.1068 -0.2849 0.9081 39 1 3.7686 -1.9796 1.3774 40 1 2.8251 0.8703 2.2720 41 1 1.0829 0.5794 2.4907 42 1 -0.3080 -2.1790 3.5665 43 1 -0.4841 -1.4457 5.1788 44 1 -0.3089 -0.4079 3.7433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264131193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = 92.756394 kcal Electronic energy + Delta-G solvation = -26696.068250 eV Core-core repulsion = 22812.800395 eV Total energy + Delta-G solvation = -3883.267855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.53434 -40.30937 -38.61407 -36.09479 -34.96912 -33.23454 -32.45793 -31.84182 -31.12302 -29.23990 -28.72176 -26.48254 -25.63226 -25.29124 -23.80497 -22.61197 -21.52365 -20.86631 -20.11130 -17.95397 -17.79969 -17.72528 -16.94948 -16.42536 -15.99995 -15.52260 -15.39318 -14.84368 -14.81055 -14.54829 -14.49734 -14.21250 -13.94627 -13.59561 -13.42307 -13.14967 -13.00696 -12.62711 -12.50141 -12.43811 -12.34106 -12.04696 -11.88898 -11.60935 -11.49562 -11.45575 -11.25419 -11.07932 -11.06353 -10.94445 -10.79534 -10.51596 -9.85719 -9.48812 -9.18793 -9.09561 -8.98593 -8.27989 -6.53647 -6.24495 -3.95506 0.80724 1.57736 1.84443 2.88562 3.00528 3.19116 3.21161 3.26259 3.32525 3.56959 3.69091 3.77304 4.04908 4.06348 4.17634 4.37013 4.45620 4.62802 4.67554 4.73507 4.80772 4.88287 4.96115 5.01448 5.02582 5.10642 5.15598 5.30861 5.32704 5.38605 5.42894 5.58249 5.68281 5.69816 5.82007 5.83197 5.88347 5.94798 6.08248 6.17404 6.28536 6.61167 7.56097 7.60364 8.23958 8.31910 8.53487 9.20721 10.82823 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.034372 B = 0.001849 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.418548 B =15137.596352 C =15286.465193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.056 3.944 3 H 0.065 0.935 4 C 0.150 3.850 5 H 0.104 0.896 6 N -0.734 5.734 7 C 0.534 3.466 8 O -0.513 6.513 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.137 4.137 20 C 0.036 3.964 21 N -0.504 5.504 22 C 0.123 3.877 23 C 0.196 3.804 24 N -0.298 5.298 25 N -0.076 5.076 26 N -0.096 5.096 27 N -0.298 5.298 28 C 0.081 3.919 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.397 0.603 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 3.553 26.753 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.052 4.052 3 H 0.083 0.917 4 C 0.044 3.956 5 H 0.122 0.878 6 N -0.389 5.389 7 C 0.320 3.680 8 O -0.387 6.387 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.176 4.176 20 C -0.092 4.092 21 N -0.229 5.229 22 C -0.008 4.008 23 C -0.083 4.083 24 N -0.148 5.148 25 N -0.070 5.070 26 N -0.082 5.082 27 N -0.100 5.100 28 C -0.061 4.061 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.328 0.444 27.216 28.189 hybrid contribution 0.557 3.667 -0.953 3.830 sum -6.770 4.111 26.263 27.431 Atomic orbital electron populations 1.21760 0.92695 1.03193 1.01927 1.22888 0.96834 0.96169 0.89327 0.91720 1.21581 0.96794 0.91505 0.85754 0.87833 1.46111 1.72189 1.14531 1.06024 1.20322 0.76249 0.88752 0.82644 1.90713 1.46052 1.19205 1.82709 1.23535 1.04256 1.02097 1.00561 1.85410 1.89660 1.16793 0.91382 1.22819 1.53648 0.98302 0.93744 0.90983 1.24993 0.94824 0.96473 0.97282 1.70004 1.45388 1.21223 1.13615 0.86224 0.79133 0.81093 0.79052 1.19937 1.20797 1.19944 1.22800 0.98835 1.01896 0.94062 1.23195 0.88401 1.01183 0.96390 1.65314 1.20126 1.35878 1.01620 1.20643 1.03695 0.91798 0.84677 1.25770 0.85174 0.99637 0.97685 1.75028 1.20262 1.13495 1.06057 1.78642 1.06619 1.11136 1.10564 1.78902 1.01444 1.15953 1.11939 1.48349 1.11000 1.32051 1.18633 1.22412 0.71909 1.05939 1.05800 0.92686 0.91295 0.91248 0.76920 0.89228 0.89236 0.92098 0.90153 0.90095 0.92666 0.89820 0.89791 0.87898 0.87903 0.87610 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.34 37.16 0.35 -0.42 16 2 C 0.06 0.37 2.58 -66.07 -0.17 0.20 16 3 H 0.06 0.35 7.61 -51.93 -0.40 -0.04 16 4 C 0.15 1.52 2.96 -66.55 -0.20 1.32 16 5 H 0.10 1.29 7.25 -51.93 -0.38 0.91 16 6 N -0.73 -8.45 5.02 -52.47 -0.26 -8.71 16 7 C 0.53 9.15 7.85 -10.99 -0.09 9.07 16 8 O -0.51 -10.96 15.51 5.55 0.09 -10.87 16 9 C -0.15 -2.92 6.16 36.00 0.22 -2.70 16 10 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 11 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 12 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 15 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.14 -1.39 6.79 -25.35 -0.17 -1.57 16 20 C 0.04 0.30 6.12 -2.19 -0.01 0.29 16 21 N -0.50 -3.43 5.01 -223.59 -1.12 -4.55 16 22 C 0.12 0.65 5.12 -4.97 -0.03 0.62 16 23 C 0.20 1.61 7.30 -155.43 -1.13 0.47 16 24 N -0.30 -3.45 12.36 32.70 0.40 -3.04 16 25 N -0.08 -0.97 13.43 60.35 0.81 -0.16 16 26 N -0.10 -1.03 13.29 60.35 0.80 -0.23 16 27 N -0.30 -2.20 3.75 -65.03 -0.24 -2.44 16 28 C 0.08 0.17 11.25 59.85 0.67 0.84 16 29 H 0.05 0.18 7.31 -51.93 -0.38 -0.20 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.40 3.41 8.38 -40.82 -0.34 3.07 16 33 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 34 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 38 H 0.06 0.44 7.75 -51.93 -0.40 0.04 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.42 7.77 -51.93 -0.40 0.01 16 41 H 0.10 0.25 6.20 -51.93 -0.32 -0.08 16 42 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 44 H 0.10 -0.04 7.14 -51.93 -0.37 -0.41 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -37.08 382.06 -6.96 -44.04 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.33 Total: -2.42 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.36 Total: -4.57 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 1.12 Total: -44.18 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.08 -6.96 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264131193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.795 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds