Wall clock time and date at job start Sat Apr 11 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.36722 * 2 1 4 4 C 1.54379 * 110.41442 * 237.51843 * 2 1 3 5 5 H 1.09000 * 110.32200 * 336.37240 * 4 2 1 6 6 N 1.46497 * 110.32113 * 98.47279 * 4 2 1 7 7 C 1.34783 * 120.00259 * 205.00273 * 6 4 2 8 8 O 1.21284 * 119.99264 * 0.02562 * 7 6 4 9 9 C 1.50691 * 120.00608 * 180.02562 * 7 6 4 10 10 S 1.81003 * 109.47597 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00195 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99889 * 0.02562 * 11 10 9 13 13 C 1.38799 * 119.99800 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99950 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99554 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47736 * 59.99566 * 15 13 11 17 17 H 1.48503 * 109.46869 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47209 * 299.99261 * 15 13 11 19 19 C 1.54259 * 105.06460 * 217.36951 * 4 2 1 20 20 C 1.54386 * 105.05829 * 0.02562 * 19 4 2 21 21 N 1.48558 * 110.41062 * 122.34797 * 2 1 3 22 22 C 1.46906 * 111.00058 * 277.81794 * 21 2 1 23 23 C 1.50701 * 109.46965 * 169.99976 * 22 21 2 24 24 N 1.31066 * 126.66095 * 90.02992 * 23 22 21 25 25 N 1.28841 * 107.99466 * 179.97438 * 24 23 22 26 26 N 1.28744 * 109.39592 * 359.97438 * 25 24 23 27 27 N 1.29024 * 108.80565 * 359.74617 * 26 25 24 28 28 C 1.46500 * 126.43720 * 180.24690 * 27 26 25 29 29 H 1.09002 * 109.46854 * 299.11033 * 1 2 3 30 30 H 1.08999 * 109.46990 * 59.10829 * 1 2 3 31 31 H 1.09002 * 109.46882 * 179.10397 * 1 2 3 32 32 H 0.96995 * 120.00385 * 25.00404 * 6 4 2 33 33 H 1.09000 * 109.47429 * 300.00311 * 9 7 6 34 34 H 1.09002 * 109.46912 * 59.99598 * 9 7 6 35 35 H 0.96995 * 119.99559 * 180.02562 * 14 13 11 36 36 H 1.08996 * 110.32374 * 118.89333 * 19 4 2 37 37 H 1.08996 * 110.32290 * 241.00569 * 19 4 2 38 38 H 1.08996 * 110.40505 * 265.07372 * 20 19 4 39 39 H 1.08992 * 110.41287 * 142.63152 * 20 19 4 40 40 H 1.08993 * 109.47164 * 289.99919 * 22 21 2 41 41 H 1.08996 * 109.46920 * 49.99953 * 22 21 2 42 42 H 1.08996 * 109.47073 * 270.17622 * 28 27 26 43 43 H 1.08995 * 109.47083 * 30.18310 * 28 27 26 44 44 H 1.08999 * 109.46711 * 150.17986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0685 -0.7770 -1.2205 5 1 1.3229 -1.4885 -1.5753 6 7 2.4356 0.1511 -2.2929 7 6 2.4425 -0.2679 -3.5739 8 8 2.1443 -1.4133 -3.8387 9 6 2.8208 0.6865 -4.6770 10 16 2.7357 -0.1683 -6.2702 11 6 3.2128 1.1425 -7.3466 12 1 3.4488 2.1153 -6.9413 13 6 3.2855 0.9248 -8.7155 14 7 2.9984 -0.2611 -9.2094 15 14 3.7920 2.3143 -9.8565 16 1 5.1547 2.7804 -9.4946 17 1 3.7923 1.8274 -11.2595 18 1 2.8322 3.4394 -9.7228 19 6 3.3178 -1.5197 -0.7036 20 6 3.4287 -1.1295 0.7860 21 7 2.0481 -0.7450 1.1762 22 6 2.0569 0.1041 2.3751 23 6 2.3503 -0.7416 3.5874 24 7 3.5318 -1.0085 4.0881 25 7 3.3657 -1.7606 5.1209 26 7 2.1088 -1.9800 5.2924 27 7 1.4494 -1.3639 4.3703 28 6 -0.0061 -1.3482 4.2041 29 1 -0.3633 0.5000 0.8979 30 1 -0.3633 0.5276 -0.8819 31 1 -0.3633 -1.0276 -0.0161 32 1 2.6738 1.0672 -2.0811 33 1 2.1309 1.5304 -4.6797 34 1 3.8359 1.0478 -4.5126 35 1 3.0495 -0.4133 -10.1660 36 1 3.1861 -2.5971 -0.8035 37 1 4.2039 -1.1950 -1.2490 38 1 4.1068 -0.2849 0.9081 39 1 3.7686 -1.9796 1.3774 40 1 2.8251 0.8703 2.2720 41 1 1.0829 0.5794 2.4907 42 1 -0.3080 -2.1790 3.5665 43 1 -0.4841 -1.4457 5.1788 44 1 -0.3089 -0.4079 3.7433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264131193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:58 Heat of formation + Delta-G solvation = 62.989289 kcal Electronic energy + Delta-G solvation = -26697.359049 eV Core-core repulsion = 22812.800395 eV Total energy + Delta-G solvation = -3884.558654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.20053 -41.22620 -39.71950 -36.67256 -35.87832 -34.57098 -34.11835 -32.45228 -32.03018 -30.36581 -29.23661 -27.68547 -27.08969 -26.10249 -24.46172 -23.26730 -22.40795 -21.58985 -21.18243 -19.78205 -18.40769 -18.33693 -17.84283 -17.74850 -16.86480 -16.71878 -16.37064 -16.25859 -15.97854 -15.76401 -15.16550 -14.94563 -14.67777 -14.54129 -14.40506 -14.05119 -14.00769 -13.70554 -13.38305 -13.15632 -13.14153 -12.96734 -12.86845 -12.81144 -12.63127 -12.53074 -12.37775 -12.22115 -12.11102 -11.81564 -11.75153 -11.66451 -11.18769 -11.11581 -10.92322 -10.25430 -10.10047 -9.72524 -8.64765 -8.33240 -6.10973 0.19161 1.07707 1.18435 1.28449 1.44740 1.48226 1.57493 1.63317 2.20843 2.29468 2.76017 3.00898 3.07956 3.27285 3.34204 3.37937 3.67686 3.87839 3.99731 4.02738 4.15824 4.20436 4.28374 4.30878 4.33609 4.40451 4.43494 4.45804 4.54159 4.64223 4.70744 4.80610 4.83917 4.87834 4.99222 5.05586 5.09665 5.22512 5.37533 5.43061 5.43577 5.69197 5.79739 6.20916 6.52116 7.08159 7.27867 7.53100 8.75528 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.034372 B = 0.001849 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.418548 B =15137.596352 C =15286.465193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.070 3.930 3 H 0.092 0.908 4 C 0.146 3.854 5 H 0.078 0.922 6 N -0.704 5.704 7 C 0.537 3.463 8 O -0.563 6.563 9 C -0.129 4.129 10 S -0.153 6.153 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.263 1.263 17 H -0.281 1.281 18 H -0.261 1.261 19 C -0.136 4.136 20 C 0.046 3.954 21 N -0.506 5.506 22 C 0.124 3.876 23 C 0.200 3.800 24 N -0.330 5.330 25 N -0.116 5.116 26 N -0.112 5.112 27 N -0.288 5.288 28 C 0.065 3.935 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.417 0.583 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.270 0.730 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.144 0.856 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 6.990 28.039 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 H 0.109 0.891 4 C 0.040 3.960 5 H 0.096 0.904 6 N -0.359 5.359 7 C 0.323 3.677 8 O -0.441 6.441 9 C -0.281 4.281 10 S 0.074 5.926 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.819 3.181 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.185 1.185 19 C -0.175 4.175 20 C -0.082 4.082 21 N -0.232 5.232 22 C -0.006 4.006 23 C -0.079 4.079 24 N -0.181 5.181 25 N -0.109 5.109 26 N -0.099 5.099 27 N -0.090 5.090 28 C -0.074 4.074 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.254 0.746 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.162 0.838 42 H 0.129 0.871 43 H 0.137 0.863 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.431 3.920 28.562 30.038 hybrid contribution 0.816 2.567 -1.234 2.963 sum -7.615 6.487 27.329 29.102 Atomic orbital electron populations 1.21772 0.91413 1.02923 1.03348 1.22825 0.97615 0.96505 0.86913 0.89067 1.21686 0.96239 0.91528 0.86508 0.90366 1.45782 1.70122 1.15667 1.04316 1.20031 0.76054 0.87599 0.83989 1.90707 1.48675 1.21079 1.83647 1.23372 1.06120 1.02009 0.96552 1.85607 1.90064 1.19961 0.96976 1.23174 1.53329 0.98556 0.94297 0.89816 1.26125 0.94602 0.99282 0.99226 1.70178 1.46840 1.23777 1.13981 0.85018 0.79247 0.77517 0.76317 1.18744 1.20584 1.18521 1.22713 0.98419 1.00812 0.95584 1.23012 0.89806 1.00959 0.94383 1.65247 1.18784 1.36869 1.02288 1.20916 1.06395 0.90943 0.82369 1.26215 0.84479 0.99179 0.98046 1.74919 1.22481 1.14248 1.06427 1.78604 1.07747 1.12714 1.11882 1.78799 1.01247 1.16646 1.13205 1.48716 1.12558 1.30453 1.17314 1.22963 0.68976 1.08182 1.07268 0.89213 0.91976 0.92407 0.74569 0.86928 0.87328 0.92058 0.92079 0.91131 0.91573 0.91642 0.88666 0.83788 0.87149 0.86288 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.34 71.98 0.67 -0.31 16 2 C 0.07 0.66 2.58 45.06 0.12 0.78 16 3 H 0.09 0.47 7.61 -2.39 -0.02 0.45 16 4 C 0.15 2.77 2.96 45.89 0.14 2.90 16 5 H 0.08 1.96 7.25 -2.39 -0.02 1.94 16 6 N -0.70 -14.80 5.02 -438.30 -2.20 -17.00 16 7 C 0.54 18.12 7.85 87.65 0.69 18.80 16 8 O -0.56 -24.77 15.51 -3.04 -0.05 -24.82 16 9 C -0.13 -4.77 6.16 71.23 0.44 -4.33 16 10 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 11 C -0.55 -30.44 9.50 67.95 0.65 -29.79 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 13 C 0.01 0.69 5.49 84.86 0.47 1.16 16 14 N -0.91 -55.40 13.22 21.65 0.29 -55.12 16 15 Si 1.00 42.77 29.55 68.60 2.03 44.80 16 16 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 C -0.14 -2.74 6.79 31.49 0.21 -2.53 16 20 C 0.05 0.72 6.12 86.46 0.53 1.25 16 21 N -0.51 -5.35 5.01 -861.31 -4.31 -9.66 16 22 C 0.12 0.79 5.12 85.56 0.44 1.23 16 23 C 0.20 2.82 7.30 138.13 1.01 3.83 16 24 N -0.33 -7.44 12.36 -50.45 -0.62 -8.07 16 25 N -0.12 -2.99 13.43 37.01 0.50 -2.50 16 26 N -0.11 -2.34 13.29 37.02 0.49 -1.85 16 27 N -0.29 -3.63 3.75 -359.66 -1.35 -4.98 16 28 C 0.06 0.05 11.25 127.77 1.44 1.49 16 29 H 0.09 0.05 7.31 -2.39 -0.02 0.03 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.42 5.61 8.38 -92.71 -0.78 4.83 16 33 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 34 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.56 7.95 -2.39 -0.02 1.54 16 38 H 0.07 0.90 7.75 -2.39 -0.02 0.88 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 0.50 7.77 -2.39 -0.02 0.48 16 41 H 0.14 -0.25 6.20 -2.39 -0.01 -0.27 16 42 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.14 -0.87 7.14 -2.39 -0.02 -0.89 16 Total: -1.00 -87.08 382.06 0.65 -86.42 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.25 Total: 7.72 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 6.79 Total: -5.52 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -7.21 Total: -99.16 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -87.08 0.65 -86.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264131193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.413 kcal (2) G-P(sol) polarization free energy of solvation -87.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds