Wall clock time and date at job start Sat Apr 11 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46554 * 2 1 4 4 N 1.46494 * 109.47405 * 240.00110 * 2 1 3 5 5 C 1.36936 * 120.00244 * 84.99748 * 4 2 1 6 6 H 1.08002 * 119.99577 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00064 * 180.27424 * 5 4 2 8 8 N 1.31620 * 120.00184 * 359.72654 * 7 5 4 9 9 Si 1.86799 * 120.00074 * 179.72681 * 7 5 4 10 10 H 1.48498 * 109.47154 * 89.99797 * 9 7 5 11 11 H 1.48495 * 109.47424 * 210.00169 * 9 7 5 12 12 H 1.48502 * 109.47173 * 330.00201 * 9 7 5 13 13 C 1.52996 * 109.46914 * 119.99651 * 2 1 3 14 14 H 1.08999 * 109.58895 * 302.43962 * 13 2 1 15 15 C 1.53197 * 109.58688 * 62.86992 * 13 2 1 16 16 C 1.53041 * 109.31252 * 174.42393 * 15 13 2 17 17 C 1.53041 * 109.53461 * 298.62662 * 16 15 13 18 18 C 1.53189 * 109.30946 * 61.37062 * 17 16 15 19 19 N 1.46919 * 108.77818 * 305.36115 * 18 17 16 20 20 C 1.34782 * 120.63458 * 233.58826 * 19 18 17 21 21 O 1.21573 * 120.00081 * 185.95759 * 20 19 18 22 22 C 1.47667 * 119.99688 * 5.95786 * 20 19 18 23 23 N 1.31820 * 126.46118 * 353.76360 * 22 20 19 24 24 N 1.28472 * 110.13916 * 179.87996 * 23 22 20 25 25 C 1.46495 * 124.94024 * 180.12317 * 24 23 22 26 26 C 1.35641 * 110.12451 * 0.40032 * 24 23 22 27 27 C 1.35467 * 107.13432 * 359.75903 * 26 24 23 28 28 Cl 1.73599 * 127.23814 * 179.97438 * 27 26 24 29 29 H 1.09006 * 109.46475 * 174.94522 * 1 2 3 30 30 H 1.08992 * 109.47033 * 294.94814 * 1 2 3 31 31 H 1.08995 * 109.46921 * 54.95325 * 1 2 3 32 32 H 0.97003 * 119.99924 * 265.00076 * 4 2 1 33 33 H 0.97000 * 120.00444 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.49365 * 294.37018 * 15 13 2 35 35 H 1.08995 * 109.49983 * 54.46769 * 15 13 2 36 36 H 1.09004 * 109.45457 * 178.61406 * 16 15 13 37 37 H 1.08995 * 109.46392 * 58.64996 * 16 15 13 38 38 H 1.08993 * 109.50018 * 301.41970 * 17 16 15 39 39 H 1.09005 * 109.49563 * 181.31771 * 17 16 15 40 40 H 1.09001 * 109.58710 * 185.57126 * 18 17 16 41 41 H 1.08998 * 109.70627 * 65.21945 * 18 17 16 42 42 H 1.09004 * 109.47216 * 270.31849 * 25 24 23 43 43 H 1.08999 * 109.46797 * 30.31184 * 25 24 23 44 44 H 1.08998 * 109.47525 * 150.31274 * 25 24 23 45 45 H 1.08005 * 126.43071 * 179.76220 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6905 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4241 7 6 2.6066 -0.6632 -3.5105 8 7 2.9197 -1.9402 -3.4514 9 14 2.7777 0.2668 -5.1214 10 1 4.1397 0.8515 -5.2131 11 1 2.5619 -0.6658 -6.2567 12 1 1.7677 1.3540 -5.1751 13 6 2.0400 -0.7212 1.2493 14 1 1.6425 -0.2346 2.1400 15 6 1.5906 -2.1854 1.2164 16 6 2.2185 -2.9341 2.3943 17 6 3.7435 -2.8941 2.2717 18 6 4.2173 -1.4380 2.3166 19 7 3.5084 -0.6778 1.2782 20 6 4.1920 0.0460 0.3697 21 8 3.5946 0.7559 -0.4159 22 6 5.6664 -0.0234 0.3286 23 7 6.4451 -0.6546 1.1846 24 7 7.6773 -0.5122 0.8499 25 6 8.8151 -1.0827 1.5752 26 6 7.7720 0.2483 -0.2693 27 6 6.5103 0.5806 -0.6339 28 17 6.0298 1.5452 -1.9949 29 1 -0.3632 -1.0238 -0.0906 30 1 -0.3633 0.4334 0.9317 31 1 -0.3633 0.5901 -0.8413 32 1 2.2492 -1.6317 -1.1526 33 1 3.2389 -2.3986 -4.2444 34 1 0.5043 -2.2343 1.2917 35 1 1.9119 -2.6437 0.2811 36 1 1.8807 -3.9704 2.3873 37 1 1.9167 -2.4601 3.3283 38 1 4.0445 -3.3456 1.3265 39 1 4.1895 -3.4474 3.0983 40 1 5.2905 -1.3971 2.1308 41 1 3.9993 -1.0105 3.2953 42 1 9.1520 -0.3775 2.3351 43 1 8.5112 -2.0140 2.0532 44 1 9.6285 -1.2810 0.8773 45 1 8.6823 0.5349 -0.7748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265997949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:04 Heat of formation + Delta-G solvation = 108.830249 kcal Electronic energy + Delta-G solvation = -29900.246614 eV Core-core repulsion = 25983.339315 eV Total energy + Delta-G solvation = -3916.907298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51226 -39.76319 -36.67330 -35.92656 -35.09938 -33.26543 -32.21635 -31.99034 -30.46163 -29.41644 -27.87896 -27.51778 -24.90009 -23.75994 -23.12132 -22.16499 -21.47353 -20.32423 -19.82092 -18.50097 -17.19521 -16.77874 -16.28249 -16.14179 -15.29552 -14.50511 -14.41903 -14.30340 -14.02616 -13.91360 -13.68273 -13.40689 -13.20853 -13.19513 -12.87089 -12.69560 -12.41537 -12.22157 -11.95910 -11.64388 -11.44568 -11.40583 -11.21719 -10.95654 -10.59642 -10.50575 -10.48520 -10.39405 -10.18853 -9.98960 -9.75680 -9.48366 -9.22146 -9.11954 -8.61310 -8.42605 -8.11755 -7.77183 -6.46096 -5.37277 -2.58407 1.77629 2.16341 2.24531 2.96520 3.59681 3.65578 3.70531 3.71372 4.16527 4.41884 4.74759 4.84225 4.91970 4.95957 5.10525 5.17405 5.25144 5.30069 5.39092 5.54516 5.63600 5.73809 5.77417 5.88593 5.97216 5.98100 6.06287 6.17228 6.27689 6.33890 6.34564 6.43925 6.48883 6.57996 6.64427 6.73514 6.84672 7.05803 7.16556 7.26237 7.57734 7.94143 8.13604 8.20890 8.81291 9.14620 9.93367 10.49945 10.86313 11.87393 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008741 B = 0.007200 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.353705 B = 3887.835344 C = 6138.397812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.164 3.836 3 H 0.087 0.913 4 N -0.706 5.706 5 C -0.169 4.169 6 H 0.064 0.936 7 C -0.024 4.024 8 N -0.946 5.946 9 Si 0.889 3.111 10 H -0.295 1.295 11 H -0.299 1.299 12 H -0.287 1.287 13 C 0.148 3.852 14 H 0.061 0.939 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.131 4.131 18 C 0.078 3.922 19 N -0.600 5.600 20 C 0.583 3.417 21 O -0.437 6.437 22 C 0.028 3.972 23 N -0.263 5.263 24 N -0.294 5.294 25 C 0.091 3.909 26 C -0.012 4.012 27 C -0.096 4.096 28 Cl 0.002 6.998 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.378 0.622 33 H 0.245 0.755 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.133 0.867 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.130 0.312 15.817 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.054 3.946 3 H 0.105 0.895 4 N -0.348 5.348 5 C -0.301 4.301 6 H 0.082 0.918 7 C -0.217 4.217 8 N -0.599 5.599 9 Si 0.723 3.277 10 H -0.223 1.223 11 H -0.226 1.226 12 H -0.214 1.214 13 C 0.045 3.955 14 H 0.079 0.921 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.169 4.169 18 C -0.046 4.046 19 N -0.336 5.336 20 C 0.367 3.633 21 O -0.303 6.303 22 C -0.133 4.133 23 N -0.098 5.098 24 N -0.081 5.081 25 C -0.049 4.049 26 C -0.155 4.155 27 C -0.133 4.133 28 Cl 0.030 6.970 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.213 0.787 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 10.860 0.270 16.105 19.426 hybrid contribution 0.397 0.347 -1.750 1.828 sum 11.256 0.617 14.355 18.252 Atomic orbital electron populations 1.22579 1.00239 1.00751 0.99284 1.20775 0.90259 0.98217 0.85333 0.89522 1.42412 1.77419 1.09704 1.05238 1.19037 1.31950 0.92971 0.86189 0.91801 1.24457 1.04179 0.95811 0.97251 1.69634 1.53967 1.08494 1.27798 0.86394 0.77669 0.78567 0.85083 1.22285 1.22620 1.21351 1.21564 0.78647 0.95877 0.99434 0.92084 1.21970 1.00104 0.95662 0.99205 1.21520 0.95506 1.00001 0.98454 1.21863 0.96096 0.97028 1.01933 1.22525 1.01228 0.90514 0.90329 1.47606 1.06056 1.49157 1.30831 1.16819 0.82934 0.82407 0.81168 1.90997 1.65330 1.37430 1.36512 1.22406 0.95733 1.00778 0.94430 1.73169 0.89678 1.22158 1.24784 1.45464 1.05529 1.37063 1.20022 1.22130 0.85103 1.00333 0.97356 1.22526 0.99074 1.01192 0.92754 1.20887 0.92140 1.04410 0.95884 1.98402 1.91521 1.67818 1.39230 0.93672 0.95011 0.92948 0.78725 0.94497 0.91211 0.90331 0.92461 0.92595 0.91573 0.91957 0.85046 0.93094 0.89860 0.88529 0.88742 0.79745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 9.07 37.16 0.34 -2.89 16 2 C 0.16 3.49 1.89 -67.93 -0.13 3.37 16 3 H 0.09 2.04 5.86 -52.25 -0.31 1.73 16 4 N -0.71 -18.16 3.49 -53.43 -0.19 -18.34 16 5 C -0.17 -4.91 8.11 -15.06 -0.12 -5.03 16 6 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 8 N -0.95 -29.91 13.06 55.49 0.72 -29.19 16 9 Si 0.89 24.34 29.55 -169.99 -5.02 19.31 16 10 H -0.29 -8.09 7.11 56.52 0.40 -7.68 16 11 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 12 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 13 C 0.15 2.65 2.74 -67.60 -0.19 2.46 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.13 -2.17 4.81 -26.61 -0.13 -2.30 16 16 C -0.12 -1.59 5.88 -26.69 -0.16 -1.74 16 17 C -0.13 -1.80 6.08 -26.61 -0.16 -1.96 16 18 C 0.08 1.16 6.33 -3.72 -0.02 1.13 16 19 N -0.60 -10.92 2.96 -166.39 -0.49 -11.41 16 20 C 0.58 12.27 7.12 -12.41 -0.09 12.18 16 21 O -0.44 -10.49 9.07 5.30 0.05 -10.45 16 22 C 0.03 0.53 6.90 -82.76 -0.57 -0.04 16 23 N -0.26 -4.04 8.30 33.42 0.28 -3.76 16 24 N -0.29 -3.56 3.72 -67.94 -0.25 -3.81 16 25 C 0.09 0.55 11.32 59.84 0.68 1.23 16 26 C -0.01 -0.15 11.49 -16.86 -0.19 -0.35 16 27 C -0.10 -1.73 6.80 -39.31 -0.27 -2.00 16 28 Cl 0.00 0.03 28.20 -51.86 -1.46 -1.43 16 29 H 0.04 0.86 6.91 -51.93 -0.36 0.50 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.38 10.43 5.83 -40.82 -0.24 10.19 16 33 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.07 1.09 6.93 -51.93 -0.36 0.73 16 35 H 0.08 1.59 6.21 -51.93 -0.32 1.26 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.13 1.97 3.69 -119.19 -0.44 1.53 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.35 8.13 -51.93 -0.42 -0.07 16 45 H 0.19 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -35.56 362.89 -8.65 -44.21 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.64 Total: 6.16 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.11 Total: 3.24 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: 0.07 Total: -66.51 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.05 Total: -10.45 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.02 Total: 19.31 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.46 Total: -1.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.56 -8.65 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265997949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.038 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds