Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46960 * 2 1 4 4 N 1.46498 * 109.47204 * 239.99499 * 2 1 3 5 5 C 1.36935 * 120.00167 * 70.13772 * 4 2 1 6 6 H 1.08006 * 119.99805 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00418 * 179.97438 * 5 4 2 8 8 N 1.31626 * 120.00025 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00471 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47198 * 59.99760 * 9 7 5 11 11 H 1.48500 * 109.47586 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47183 * 299.99971 * 9 7 5 13 13 C 1.53005 * 109.46740 * 119.99375 * 2 1 3 14 14 H 1.09002 * 109.70090 * 67.91989 * 13 2 1 15 15 C 1.52756 * 109.51037 * 307.79964 * 13 2 1 16 16 C 1.53042 * 109.38234 * 185.70730 * 15 13 2 17 17 C 1.53044 * 109.53753 * 61.23854 * 16 15 13 18 18 C 1.53186 * 109.31639 * 298.63558 * 17 16 15 19 19 N 1.46926 * 109.58134 * 188.27337 * 13 2 1 20 20 C 1.34776 * 120.63679 * 353.41706 * 19 13 2 21 21 O 1.21580 * 119.99630 * 6.50443 * 20 19 13 22 22 C 1.47660 * 120.00408 * 186.49608 * 20 19 13 23 23 N 1.31823 * 126.46117 * 6.23831 * 22 20 19 24 24 N 1.28472 * 110.13795 * 180.02562 * 23 22 20 25 25 C 1.46503 * 124.93514 * 180.02562 * 24 23 22 26 26 C 1.35636 * 110.13101 * 359.97438 * 24 23 22 27 27 C 1.35466 * 107.13184 * 359.97438 * 26 24 23 28 28 Cl 1.73601 * 127.23775 * 179.97438 * 27 26 24 29 29 H 1.09003 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47200 * 300.00409 * 1 2 3 31 31 H 1.09006 * 109.46724 * 60.00662 * 1 2 3 32 32 H 0.96999 * 119.99997 * 250.12657 * 4 2 1 33 33 H 0.96988 * 120.00326 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.56561 * 65.67439 * 15 13 2 35 35 H 1.08997 * 109.36177 * 305.61823 * 15 13 2 36 36 H 1.09002 * 109.45960 * 301.22120 * 16 15 13 37 37 H 1.08996 * 109.44985 * 181.25201 * 16 15 13 38 38 H 1.09000 * 109.49758 * 178.68276 * 17 16 15 39 39 H 1.09007 * 109.52284 * 58.60767 * 17 16 15 40 40 H 1.08999 * 109.58780 * 294.84841 * 18 17 16 41 41 H 1.08999 * 109.58875 * 174.41710 * 18 17 16 42 42 H 1.08998 * 109.47048 * 269.97453 * 25 24 23 43 43 H 1.09002 * 109.46939 * 29.97183 * 25 24 23 44 44 H 1.09001 * 109.47021 * 149.97005 * 25 24 23 45 45 H 1.07998 * 126.43383 * 179.74333 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.8667 -0.1148 -2.4292 6 1 1.3867 0.8484 -2.5200 7 6 2.3299 -0.7690 -3.5624 8 7 2.9153 -1.9427 -3.4518 9 14 2.1224 0.0162 -5.2446 10 1 2.8275 1.3229 -5.2713 11 1 2.6961 -0.8777 -6.2824 12 1 0.6780 0.2275 -5.5175 13 6 2.0399 -0.7212 1.2494 14 1 1.7987 -1.7822 1.1854 15 6 1.3779 -0.1233 2.4894 16 6 1.9933 -0.7469 3.7443 17 6 3.4896 -0.4291 3.7927 18 6 4.1763 -1.0355 2.5649 19 7 3.4956 -0.5525 1.3557 20 6 4.1926 0.0389 0.3653 21 8 3.6066 0.5441 -0.5726 22 6 5.6678 0.0735 0.4193 23 7 6.4335 -0.5281 1.3078 24 7 7.6710 -0.2876 1.0604 25 6 8.7980 -0.7972 1.8456 26 6 7.7827 0.5058 -0.0340 27 6 6.5265 0.7582 -0.4737 28 17 6.0664 1.7210 -1.8431 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.4493 -1.5559 -1.1146 33 1 3.2393 -2.3996 -4.2436 34 1 0.3080 -0.3302 2.4676 35 1 1.5404 0.9544 2.5017 36 1 1.8522 -1.8275 3.7193 37 1 1.5063 -0.3374 4.6292 38 1 3.9225 -0.8537 4.6984 39 1 3.6326 0.6515 3.7930 40 1 4.1129 -2.1227 2.6104 41 1 5.2221 -0.7290 2.5426 42 1 9.0360 -0.0905 2.6406 43 1 8.5307 -1.7593 2.2827 44 1 9.6657 -0.9211 1.1977 45 1 8.7005 0.8710 -0.4705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265997951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = 86.780367 kcal Electronic energy + Delta-G solvation = -29552.268709 eV Core-core repulsion = 25634.405256 eV Total energy + Delta-G solvation = -3917.863453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.64513 -41.22730 -38.09629 -37.35102 -36.87489 -34.52805 -33.90293 -33.47954 -31.69865 -31.34830 -29.36118 -28.45645 -26.36617 -25.81242 -24.21650 -23.51309 -22.51828 -21.67430 -21.20710 -20.29188 -18.91847 -18.14792 -17.41868 -17.31209 -16.70840 -16.67316 -15.77388 -15.62371 -15.46809 -15.38456 -14.89937 -14.84486 -14.66393 -14.36792 -14.14744 -13.91647 -13.58902 -13.51348 -13.48578 -13.40758 -12.96452 -12.77393 -12.71954 -12.68891 -12.54761 -12.29398 -12.09596 -11.82421 -11.67542 -11.59283 -11.50110 -11.19921 -10.89631 -10.77090 -10.20242 -9.83449 -9.72771 -9.31035 -8.47897 -7.71621 -4.88306 0.60142 0.94349 1.10883 1.42956 1.47471 1.51742 1.81634 2.28637 2.63940 2.69398 3.45732 3.62897 3.72996 3.83818 3.90937 4.04465 4.13443 4.20383 4.35572 4.40067 4.44707 4.45641 4.47654 4.54995 4.68051 4.74006 4.80316 4.82414 4.93636 4.97816 5.06296 5.12097 5.13021 5.22406 5.23069 5.31484 5.46775 5.52644 5.63193 5.68047 5.80638 6.06074 6.49049 6.67221 6.85516 7.54819 7.65298 8.33300 8.56645 9.53600 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008884 B = 0.006416 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.977718 B = 4363.224500 C = 6792.282206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.178 3.822 3 H 0.038 0.962 4 N -0.695 5.695 5 C -0.165 4.165 6 H 0.054 0.946 7 C -0.084 4.084 8 N -0.976 5.976 9 Si 0.948 3.052 10 H -0.294 1.294 11 H -0.299 1.299 12 H -0.282 1.282 13 C 0.153 3.847 14 H 0.056 0.944 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.124 4.124 18 C 0.086 3.914 19 N -0.605 5.605 20 C 0.545 3.455 21 O -0.466 6.466 22 C -0.015 4.015 23 N -0.254 5.254 24 N -0.277 5.277 25 C 0.076 3.924 26 C 0.016 3.984 27 C -0.140 4.140 28 Cl -0.034 7.034 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.362 0.638 33 H 0.238 0.762 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.478 2.876 20.909 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.070 3.930 3 H 0.055 0.945 4 N -0.333 5.333 5 C -0.298 4.298 6 H 0.072 0.928 7 C -0.274 4.274 8 N -0.631 5.631 9 Si 0.780 3.220 10 H -0.221 1.221 11 H -0.225 1.225 12 H -0.209 1.209 13 C 0.049 3.951 14 H 0.074 0.926 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.162 4.162 18 C -0.036 4.036 19 N -0.341 5.341 20 C 0.329 3.671 21 O -0.334 6.334 22 C -0.174 4.174 23 N -0.092 5.092 24 N -0.064 5.064 25 C -0.061 4.061 26 C -0.129 4.129 27 C -0.177 4.177 28 Cl -0.005 7.005 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.193 0.807 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.145 0.855 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.138 2.662 21.147 24.528 hybrid contribution 0.073 0.508 -2.486 2.538 sum 12.211 3.169 18.661 22.526 Atomic orbital electron populations 1.22396 0.97856 1.00769 1.00640 1.20572 0.91536 0.95781 0.85129 0.94483 1.42354 1.68896 1.20348 1.01707 1.19112 1.26148 0.99413 0.85173 0.92802 1.25083 1.04098 0.98278 0.99901 1.69785 1.49127 1.16754 1.27442 0.85541 0.77377 0.77008 0.82048 1.22132 1.22546 1.20857 1.21307 0.79228 0.98703 0.95833 0.92624 1.21885 1.00520 1.00193 0.93265 1.21521 0.95341 1.01050 0.97196 1.21877 0.96035 1.00740 0.97584 1.22471 0.99625 0.98372 0.83151 1.47727 1.07131 1.60343 1.18919 1.17463 0.84385 0.82191 0.83069 1.91215 1.67207 1.42256 1.32676 1.22190 0.95258 1.03235 0.96715 1.73372 0.90784 1.21867 1.23160 1.46093 1.05620 1.33917 1.20819 1.22739 0.84120 1.02358 0.96874 1.23075 0.98813 0.99068 0.91925 1.21173 0.94191 1.06050 0.96328 1.98365 1.92657 1.68945 1.40547 0.93766 0.90590 0.95038 0.80720 0.95264 0.89229 0.92225 0.91492 0.89658 0.88570 0.92665 0.92488 0.86126 0.87150 0.87685 0.85512 0.75369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.06 8.73 71.98 0.63 -5.43 16 2 C 0.18 7.86 1.80 44.99 0.08 7.95 16 3 H 0.04 1.85 6.37 -2.39 -0.02 1.84 16 4 N -0.69 -38.39 3.06 -322.93 -0.99 -39.38 16 5 C -0.17 -10.14 8.33 84.03 0.70 -9.44 16 6 H 0.05 3.33 7.83 -2.91 -0.02 3.30 16 7 C -0.08 -5.31 5.50 84.86 0.47 -4.84 16 8 N -0.98 -65.26 13.06 21.65 0.28 -64.97 16 9 Si 0.95 51.99 29.55 68.60 2.03 54.01 16 10 H -0.29 -16.05 7.11 99.48 0.71 -15.34 16 11 H -0.30 -16.38 7.11 99.48 0.71 -15.67 16 12 H -0.28 -14.78 7.11 99.48 0.71 -14.07 16 13 C 0.15 5.45 2.55 44.83 0.11 5.56 16 14 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 15 C -0.12 -3.12 4.56 30.53 0.14 -2.98 16 16 C -0.11 -2.25 5.89 30.62 0.18 -2.07 16 17 C -0.12 -2.53 6.08 30.67 0.19 -2.34 16 18 C 0.09 2.35 6.12 86.36 0.53 2.88 16 19 N -0.60 -21.91 2.98 -799.39 -2.38 -24.29 16 20 C 0.55 23.82 7.32 86.73 0.63 24.46 16 21 O -0.47 -24.26 9.03 -3.97 -0.04 -24.30 16 22 C -0.01 -0.56 6.83 42.45 0.29 -0.27 16 23 N -0.25 -7.41 8.43 -48.18 -0.41 -7.82 16 24 N -0.28 -5.78 3.72 -368.86 -1.37 -7.15 16 25 C 0.08 0.56 11.32 127.77 1.45 2.00 16 26 C 0.02 0.38 11.49 83.46 0.96 1.34 16 27 C -0.14 -4.97 6.80 22.44 0.15 -4.82 16 28 Cl -0.03 -1.36 28.20 -2.72 -0.08 -1.43 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.31 6.45 -2.39 -0.02 2.30 16 31 H 0.03 1.33 7.90 -2.38 -0.02 1.31 16 32 H 0.36 21.88 7.62 -92.71 -0.71 21.17 16 33 H 0.24 15.70 8.31 -92.72 -0.77 14.93 16 34 H 0.09 2.07 6.69 -2.39 -0.02 2.05 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.12 3.28 4.14 -30.75 -0.13 3.15 16 42 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.13 0.20 8.13 -2.39 -0.02 0.18 16 45 H 0.23 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -85.88 365.58 3.75 -82.13 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.19 Total: 21.20 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.51 Total: 12.00 kcal Atomic # 7 Polarization: -138.75 SS G_CDS: -4.86 Total: -143.61 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.04 Total: -24.30 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.03 Total: 54.01 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.43 kcal Total: -85.88 3.75 -82.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265997951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.913 kcal (2) G-P(sol) polarization free energy of solvation -85.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds