Wall clock time and date at job start Sat Apr 11 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46851 * 2 1 4 4 N 1.39931 * 125.75069 * 269.99717 * 3 2 1 5 5 C 1.30413 * 108.95870 * 179.71550 * 4 3 2 6 6 C 1.50700 * 125.97448 * 180.26322 * 5 4 3 7 7 C 1.41339 * 108.04666 * 0.44404 * 5 4 3 8 8 C 1.47307 * 126.43036 * 179.81339 * 7 5 4 9 9 O 1.21616 * 120.00081 * 269.71673 * 8 7 5 10 10 N 1.34771 * 119.99502 * 89.72085 * 8 7 5 11 11 C 1.47020 * 125.65393 * 359.95485 * 10 8 7 12 12 C 1.54368 * 107.29315 * 178.94554 * 11 10 8 13 13 C 1.55159 * 102.92036 * 337.85855 * 12 11 10 14 14 H 1.08999 * 111.00743 * 277.36675 * 13 12 11 15 15 C 1.52993 * 111.00659 * 153.54509 * 13 12 11 16 16 N 1.46496 * 109.47551 * 178.18098 * 15 13 12 17 17 C 1.36934 * 120.00548 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47427 * 125.64743 * 179.97438 * 10 8 7 26 26 C 1.34347 * 125.74985 * 90.00116 * 3 2 1 27 27 Cl 1.73598 * 126.31774 * 359.97438 * 26 3 2 28 28 H 1.09002 * 109.47497 * 59.99919 * 1 2 3 29 29 H 1.09003 * 109.47515 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47649 * 300.00148 * 1 2 3 31 31 H 1.09001 * 109.47152 * 240.00438 * 2 1 3 32 32 H 1.08997 * 109.47440 * 119.99619 * 2 1 3 33 33 H 1.09002 * 109.47044 * 270.21480 * 6 5 4 34 34 H 1.08999 * 109.46965 * 30.21502 * 6 5 4 35 35 H 1.09002 * 109.46922 * 150.21049 * 6 5 4 36 36 H 1.09002 * 109.88388 * 298.39753 * 11 10 8 37 37 H 1.09005 * 109.88005 * 59.40142 * 11 10 8 38 38 H 1.09000 * 110.75831 * 219.49646 * 12 11 10 39 39 H 1.09001 * 110.70732 * 96.20369 * 12 11 10 40 40 H 1.09004 * 109.46862 * 58.18296 * 15 13 12 41 41 H 1.09004 * 109.46998 * 298.18774 * 15 13 12 42 42 H 0.96999 * 119.99694 * 0.02562 * 16 15 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.09000 * 110.36373 * 85.25362 * 25 10 8 45 45 H 1.08998 * 110.45921 * 322.97580 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2908 2.1521 -1.1356 5 6 2.7011 3.3313 -0.7589 6 6 3.0937 4.4650 -1.6707 7 6 2.7172 3.3584 0.6542 8 6 3.1186 4.4937 1.5027 9 8 4.2774 4.6114 1.8527 10 7 2.2016 5.4017 1.8913 11 6 0.7737 5.3812 1.5419 12 6 0.1156 6.5967 2.2292 13 6 1.0987 6.9151 3.3866 14 1 0.9088 6.2747 4.2480 15 6 1.0248 8.3922 3.7782 16 7 1.9324 8.6461 4.8998 17 6 2.0365 9.9066 5.4247 18 1 1.4491 10.7135 5.0119 19 6 2.8968 10.1473 6.4870 20 7 2.9965 11.3588 6.9918 21 14 3.9122 8.7514 7.2013 22 1 3.1495 8.0921 8.2916 23 1 4.2098 7.7604 6.1361 24 1 5.1843 9.2921 7.7440 25 6 2.4644 6.5804 2.7370 26 6 2.2799 2.1213 1.0903 27 17 2.1012 1.6176 2.7420 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 4.1583 4.3989 -1.8951 34 1 2.5225 4.4009 -2.5968 35 1 2.8841 5.4154 -1.1797 36 1 0.6554 5.4571 0.4610 37 1 0.3176 4.4584 1.9006 38 1 -0.8676 6.3342 2.6197 39 1 0.0459 7.4382 1.5399 40 1 0.0049 8.6393 4.0731 41 1 1.3167 9.0085 2.9279 42 1 2.4602 7.9215 5.2702 43 1 3.5974 11.5268 7.7344 44 1 2.8090 7.4155 2.1271 45 1 3.2012 6.3423 3.5041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266037172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:14 Heat of formation + Delta-G solvation = 26.093751 kcal Electronic energy + Delta-G solvation = -27553.525502 eV Core-core repulsion = 23633.030480 eV Total energy + Delta-G solvation = -3920.495022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.70212 -40.87743 -38.81106 -38.21270 -36.56532 -35.99274 -34.02307 -32.53429 -32.41077 -31.19260 -30.13015 -28.81487 -27.38290 -25.41929 -24.34543 -23.33203 -22.72578 -21.68644 -21.39766 -20.39035 -19.62372 -18.63528 -17.85028 -17.44473 -16.73186 -16.57642 -16.51164 -16.08849 -15.59964 -15.52998 -15.18718 -14.87388 -14.65142 -14.38540 -14.26436 -14.07448 -13.87244 -13.69244 -13.66598 -13.45993 -13.41727 -13.18826 -13.06037 -12.92659 -12.81500 -12.72673 -12.29608 -12.19755 -11.99889 -11.92600 -11.90597 -11.76473 -11.59603 -11.19722 -10.97057 -10.41744 -9.86155 -9.75309 -9.28036 -8.02633 -5.34813 0.08929 0.21964 1.10763 1.34645 1.35325 1.37178 1.39674 1.46057 1.98835 2.47430 3.11783 3.28633 3.37647 3.60727 3.65127 3.71099 3.89222 3.96120 3.98768 4.02608 4.16945 4.24833 4.27818 4.40609 4.54313 4.62363 4.65499 4.66429 4.69721 4.71383 4.82166 4.86973 4.91588 5.01468 5.06692 5.15527 5.16571 5.23336 5.28298 5.42180 5.48863 5.77513 6.21936 6.26019 6.40447 6.99067 7.08748 7.86004 8.02423 9.18922 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.002807 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.675401 B = 9972.696656 C =10292.099316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.341 5.341 4 N -0.279 5.279 5 C 0.117 3.883 6 C -0.078 4.078 7 C -0.273 4.273 8 C 0.610 3.390 9 O -0.578 6.578 10 N -0.603 5.603 11 C 0.105 3.895 12 C -0.109 4.109 13 C -0.100 4.100 14 H 0.085 0.915 15 C 0.167 3.833 16 N -0.762 5.762 17 C -0.229 4.229 18 H 0.063 0.937 19 C -0.062 4.062 20 N -0.983 5.983 21 Si 0.947 3.053 22 H -0.276 1.276 23 H -0.260 1.260 24 H -0.297 1.297 25 C 0.113 3.887 26 C 0.159 3.841 27 Cl 0.019 6.981 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.041 0.959 41 H 0.032 0.968 42 H 0.363 0.637 43 H 0.257 0.743 44 H 0.069 0.931 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 -27.877 -19.943 35.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.123 5.123 4 N -0.103 5.103 5 C -0.049 4.049 6 C -0.136 4.136 7 C -0.289 4.289 8 C 0.398 3.602 9 O -0.457 6.457 10 N -0.335 5.335 11 C -0.017 4.017 12 C -0.148 4.148 13 C -0.120 4.120 14 H 0.103 0.897 15 C 0.041 3.959 16 N -0.407 5.407 17 C -0.360 4.360 18 H 0.081 0.919 19 C -0.253 4.253 20 N -0.633 5.633 21 Si 0.775 3.225 22 H -0.202 1.202 23 H -0.185 1.185 24 H -0.223 1.223 25 C -0.009 4.009 26 C 0.000 4.000 27 Cl 0.047 6.953 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.196 0.804 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.119 -28.631 -20.640 36.454 hybrid contribution 1.271 0.150 1.960 2.341 sum -7.848 -28.481 -18.680 34.953 Atomic orbital electron populations 1.22160 0.92171 1.05052 1.02786 1.22346 0.96940 0.75024 1.06700 1.48948 1.48893 1.13412 1.01044 1.77235 1.23527 1.03765 1.05755 1.22598 0.96274 0.94888 0.91153 1.20399 1.03195 0.92073 0.97939 1.19607 1.20084 0.94650 0.94585 1.17041 0.83650 0.80862 0.78657 1.90795 1.20218 1.76767 1.57967 1.48516 1.10237 1.24788 1.50002 1.22208 0.78613 0.99797 1.01033 1.22663 0.98756 0.97447 0.95890 1.22473 0.94172 0.96492 0.98828 0.89658 1.20755 0.93286 0.92923 0.88978 1.42808 1.51178 1.07197 1.39539 1.19062 1.18972 0.87250 1.10677 0.91892 1.25416 1.01661 0.98502 0.99732 1.69866 1.42901 1.21597 1.28984 0.85528 0.78376 0.79728 0.78894 1.20193 1.18490 1.22346 1.22234 0.98215 0.87151 0.93309 1.21939 1.01788 0.91805 0.84461 1.98450 1.95857 1.90789 1.10172 0.92040 0.87409 0.92444 0.86223 0.87148 0.89356 0.87861 0.90221 0.89547 0.90744 0.87252 0.88825 0.94073 0.95004 0.80425 0.93389 0.91250 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 10.24 71.98 0.74 -0.33 16 2 C 0.11 0.99 6.97 86.38 0.60 1.59 16 3 N -0.34 -6.00 3.58 -336.06 -1.20 -7.20 16 4 N -0.28 -5.69 12.49 -46.66 -0.58 -6.27 16 5 C 0.12 2.50 7.26 43.53 0.32 2.82 16 6 C -0.08 -1.25 10.28 71.24 0.73 -0.52 16 7 C -0.27 -6.81 5.06 -20.12 -0.10 -6.91 16 8 C 0.61 18.65 7.23 86.63 0.63 19.28 16 9 O -0.58 -23.03 17.37 -4.08 -0.07 -23.10 16 10 N -0.60 -16.05 3.33 -815.74 -2.71 -18.76 16 11 C 0.11 1.91 6.47 86.74 0.56 2.48 16 12 C -0.11 -1.91 6.42 31.80 0.20 -1.71 16 13 C -0.10 -2.68 3.07 -9.41 -0.03 -2.71 16 14 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 15 C 0.17 5.83 5.71 86.38 0.49 6.32 16 16 N -0.76 -35.35 5.30 -343.47 -1.82 -37.17 16 17 C -0.23 -13.06 10.47 84.03 0.88 -12.18 16 18 H 0.06 3.88 8.06 -2.91 -0.02 3.86 16 19 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16 21 Si 0.95 47.14 27.74 68.60 1.90 49.05 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.26 -12.13 6.52 99.48 0.65 -11.48 16 24 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 25 C 0.11 3.48 6.23 86.85 0.54 4.03 16 26 C 0.16 3.37 7.54 84.32 0.64 4.01 16 27 Cl 0.02 0.37 28.56 -2.72 -0.08 0.29 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 0.73 7.77 -2.39 -0.02 0.71 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.31 8.01 -2.39 -0.02 1.29 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.48 8.04 -2.39 -0.02 1.46 16 40 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.03 1.13 8.04 -2.39 -0.02 1.11 16 42 H 0.36 16.58 5.49 -92.71 -0.51 16.07 16 43 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.07 2.21 7.96 -2.39 -0.02 2.19 16 45 H 0.05 1.84 8.04 -2.39 -0.02 1.82 16 Total: -1.00 -79.13 390.78 2.83 -76.30 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.43 Total: 17.35 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.66 Total: 12.95 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -6.02 Total: -132.83 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.07 Total: -23.10 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.90 Total: 49.05 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal Total: -79.13 2.83 -76.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266037172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.389 kcal (2) G-P(sol) polarization free energy of solvation -79.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds