Wall clock time and date at job start Sat Apr 11 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46977 * 2 1 4 4 N 1.39921 * 125.75109 * 90.02147 * 3 2 1 5 5 C 1.30421 * 108.96049 * 180.02562 * 4 3 2 6 6 C 1.50694 * 125.97609 * 180.02562 * 5 4 3 7 7 C 1.41338 * 108.04761 * 0.02562 * 5 4 3 8 8 C 1.47292 * 126.43865 * 179.97438 * 7 5 4 9 9 O 1.21624 * 120.00146 * 89.99544 * 8 7 5 10 10 N 1.34774 * 120.00127 * 270.00284 * 8 7 5 11 11 C 1.47018 * 125.65048 * 0.02562 * 10 8 7 12 12 C 1.54321 * 107.27524 * 181.02410 * 11 10 8 13 13 C 1.55157 * 103.10033 * 22.10414 * 12 11 10 14 14 H 1.09002 * 111.00409 * 82.66048 * 13 12 11 15 15 C 1.52994 * 111.00585 * 206.50978 * 13 12 11 16 16 N 1.46497 * 109.47375 * 184.99935 * 15 13 12 17 17 C 1.36935 * 120.00372 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00147 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00539 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99408 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00387 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47076 * 89.99798 * 21 19 17 23 23 H 1.48499 * 109.46922 * 210.00053 * 21 19 17 24 24 H 1.48498 * 109.47000 * 329.99618 * 21 19 17 25 25 C 1.47434 * 125.64822 * 179.97438 * 10 8 7 26 26 C 1.34352 * 125.74559 * 270.34321 * 3 2 1 27 27 Cl 1.73596 * 126.32378 * 359.97438 * 26 3 2 28 28 H 1.08998 * 109.47109 * 60.00748 * 1 2 3 29 29 H 1.09002 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47147 * 300.00338 * 1 2 3 31 31 H 1.09000 * 109.47147 * 239.99662 * 2 1 3 32 32 H 1.09007 * 109.47093 * 119.99847 * 2 1 3 33 33 H 1.08998 * 109.47401 * 269.97605 * 6 5 4 34 34 H 1.09004 * 109.47070 * 29.97960 * 6 5 4 35 35 H 1.09001 * 109.47239 * 149.97902 * 6 5 4 36 36 H 1.09008 * 109.88015 * 61.60739 * 11 10 8 37 37 H 1.08999 * 110.01338 * 300.51726 * 11 10 8 38 38 H 1.09002 * 110.72109 * 140.55794 * 12 11 10 39 39 H 1.09003 * 110.72356 * 263.65620 * 12 11 10 40 40 H 1.08994 * 109.47586 * 305.00130 * 15 13 12 41 41 H 1.09000 * 109.47024 * 65.00200 * 15 13 12 42 42 H 0.97005 * 120.00103 * 0.02562 * 16 15 13 43 43 H 0.96999 * 119.99725 * 179.97438 * 20 19 17 44 44 H 1.09000 * 110.36877 * 274.74580 * 25 10 8 45 45 H 1.09001 * 110.36202 * 36.96356 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2912 2.1518 1.1355 5 6 2.7067 3.3293 0.7588 6 6 3.1073 4.4602 1.6706 7 6 2.7156 3.3590 -0.6542 8 6 3.1153 4.4946 -1.5029 9 8 4.2736 4.6131 -1.8543 10 7 2.1975 5.4025 -1.8899 11 6 0.7700 5.3811 -1.5388 12 6 0.1112 6.5969 -2.2239 13 6 1.0907 6.9209 -3.3828 14 1 0.8997 6.2829 -4.2457 15 6 1.0135 8.3993 -3.7689 16 7 1.8597 8.6431 -4.9397 17 6 1.9499 9.9028 -5.4690 18 1 1.3975 10.7168 -5.0231 19 6 2.7512 10.1338 -6.5786 20 7 3.4240 9.1417 -7.1224 21 14 2.8749 11.8523 -7.3002 22 1 3.9927 12.5827 -6.6505 23 1 3.1270 11.7590 -8.7606 24 1 1.6031 12.5814 -7.0631 25 6 2.4588 6.5822 -2.7347 26 6 2.2738 2.1234 -1.0904 27 17 2.0869 1.6226 -2.7420 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.2350 5.0755 1.8912 34 1 3.5094 4.0538 2.5986 35 1 3.8673 5.0696 1.1815 36 1 0.6530 5.4564 -0.4576 37 1 0.3113 4.4598 -1.8977 38 1 -0.8727 6.3343 -2.6125 39 1 0.0398 7.4370 -1.5331 40 1 -0.0181 8.6596 -4.0057 41 1 1.3605 9.0110 -2.9361 42 1 2.3561 7.9122 -5.3400 43 1 3.9837 9.3029 -7.8980 44 1 2.8034 7.4170 -2.1244 45 1 3.1961 6.3439 -3.5013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266037173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:17 Heat of formation + Delta-G solvation = 45.889342 kcal Electronic energy + Delta-G solvation = -27418.832745 eV Core-core repulsion = 23499.196124 eV Total energy + Delta-G solvation = -3919.636621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79881 -39.63334 -37.43591 -37.30335 -35.30102 -34.60608 -32.26005 -31.74228 -30.66231 -30.08224 -28.63155 -28.06168 -25.69562 -24.22253 -23.32748 -22.06872 -21.78962 -20.69147 -20.01079 -19.31313 -17.76619 -17.03036 -16.77843 -16.20378 -15.81895 -15.45503 -15.09149 -14.72871 -14.55519 -14.20343 -13.82402 -13.60496 -13.40869 -13.33199 -13.11782 -12.99755 -12.76015 -12.71185 -12.61766 -12.39522 -12.13818 -12.10706 -11.95254 -11.79544 -11.73320 -11.25769 -11.02987 -10.83794 -10.63065 -10.57023 -10.38776 -10.02915 -9.87730 -9.65120 -9.59147 -8.91669 -8.84755 -8.49797 -6.89539 -5.72680 -3.01972 0.99478 1.12370 2.03229 2.11808 2.58850 3.16044 3.46579 3.51228 3.53188 3.92039 4.34866 4.41068 4.52968 4.62638 4.66797 4.67651 4.72038 4.92846 5.03134 5.09101 5.11834 5.16376 5.33146 5.36344 5.50286 5.52992 5.53771 5.57917 5.61958 5.68069 5.91403 6.00402 6.04724 6.05970 6.14156 6.23707 6.30832 6.41906 6.49170 6.72403 6.85507 7.13307 7.61356 7.72848 8.25084 8.45600 9.56800 10.14115 10.48372 11.50002 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.002508 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.160213 B =11161.304053 C =11429.563767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 N -0.351 5.351 4 N -0.273 5.273 5 C 0.120 3.880 6 C -0.078 4.078 7 C -0.247 4.247 8 C 0.608 3.392 9 O -0.525 6.525 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.125 4.125 13 C -0.105 4.105 14 H 0.085 0.915 15 C 0.166 3.834 16 N -0.733 5.733 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.116 3.884 26 C 0.157 3.843 27 Cl 0.014 6.986 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.073 0.927 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 -19.984 18.523 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.133 5.133 4 N -0.096 5.096 5 C -0.047 4.047 6 C -0.137 4.137 7 C -0.263 4.263 8 C 0.394 3.606 9 O -0.401 6.401 10 N -0.340 5.340 11 C -0.016 4.016 12 C -0.163 4.163 13 C -0.124 4.124 14 H 0.103 0.897 15 C 0.038 3.962 16 N -0.377 5.377 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.006 4.006 26 C 0.000 4.000 27 Cl 0.042 6.958 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.106 -20.758 19.158 29.388 hybrid contribution 0.311 0.883 -1.527 1.791 sum -7.795 -19.875 17.632 27.688 Atomic orbital electron populations 1.22195 0.93447 1.03623 1.03613 1.21903 0.95914 0.76891 1.05251 1.48568 1.50382 1.12459 1.01907 1.77245 1.23193 1.03927 1.05243 1.22281 0.96556 0.94259 0.91574 1.20317 1.02539 0.93203 0.97646 1.19770 1.17610 0.94820 0.94096 1.16688 0.84336 0.80439 0.79162 1.90838 1.18056 1.75440 1.55766 1.48469 1.08759 1.25842 1.50934 1.21958 0.81041 0.99176 0.99467 1.22647 0.98881 0.97022 0.97757 1.22621 0.93307 0.99340 0.97142 0.89666 1.20576 0.94742 0.90235 0.90686 1.42374 1.54339 1.09117 1.31913 1.19203 1.22625 0.86815 1.08539 0.91177 1.24754 0.99983 0.97445 0.98781 1.69667 1.33463 1.30116 1.24752 0.86194 0.77658 0.84070 0.78275 1.21711 1.21818 1.20802 1.22411 0.98271 0.86226 0.93660 1.21936 1.02232 0.91937 0.83846 1.98452 1.95827 1.90993 1.10512 0.91700 0.89942 0.91236 0.88473 0.87717 0.89685 0.89978 0.89723 0.91754 0.92032 0.90070 0.90239 0.95827 0.95978 0.78189 0.93493 0.90911 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.16 0.38 -0.48 16 2 C 0.12 0.76 6.96 -4.04 -0.03 0.73 16 3 N -0.35 -3.61 3.58 -57.57 -0.21 -3.82 16 4 N -0.27 -3.16 12.49 33.90 0.42 -2.74 16 5 C 0.12 1.43 7.26 -82.02 -0.60 0.83 16 6 C -0.08 -0.72 10.28 36.00 0.37 -0.35 16 7 C -0.25 -3.36 5.06 -105.02 -0.53 -3.89 16 8 C 0.61 9.82 7.23 -12.58 -0.09 9.73 16 9 O -0.53 -10.61 17.36 5.26 0.09 -10.52 16 10 N -0.61 -8.91 3.33 -171.69 -0.57 -9.48 16 11 C 0.11 1.22 6.47 -3.07 -0.02 1.20 16 12 C -0.12 -1.42 6.41 -24.90 -0.16 -1.58 16 13 C -0.10 -1.62 3.06 -88.35 -0.27 -1.89 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 15 C 0.17 3.18 5.72 -4.05 -0.02 3.16 16 16 N -0.73 -18.42 5.55 -59.92 -0.33 -18.75 16 17 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.12 1.92 6.34 -2.40 -0.02 1.91 16 26 C 0.16 1.88 7.54 -16.43 -0.12 1.76 16 27 Cl 0.01 0.16 28.57 -51.86 -1.48 -1.33 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.49 7.78 -51.93 -0.40 0.09 16 32 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.43 7.97 -51.93 -0.41 0.02 16 42 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 45 H 0.08 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -34.74 393.99 -8.78 -43.52 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.99 Total: 3.69 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.35 Total: 3.75 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.04 Total: -62.61 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -1.48 Total: -1.33 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.74 -8.78 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266037173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.413 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds