Wall clock time and date at job start Sat Apr 11 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46977 * 2 1 4 4 N 1.39921 * 125.75109 * 90.02147 * 3 2 1 5 5 C 1.30421 * 108.96049 * 180.02562 * 4 3 2 6 6 C 1.50694 * 125.97609 * 180.02562 * 5 4 3 7 7 C 1.41338 * 108.04761 * 0.02562 * 5 4 3 8 8 C 1.47292 * 126.43865 * 179.97438 * 7 5 4 9 9 O 1.21624 * 120.00146 * 89.99544 * 8 7 5 10 10 N 1.34774 * 120.00127 * 270.00284 * 8 7 5 11 11 C 1.47018 * 125.65048 * 0.02562 * 10 8 7 12 12 C 1.54321 * 107.27524 * 181.02410 * 11 10 8 13 13 C 1.55157 * 103.10033 * 22.10414 * 12 11 10 14 14 H 1.09002 * 111.00409 * 82.66048 * 13 12 11 15 15 C 1.52994 * 111.00585 * 206.50978 * 13 12 11 16 16 N 1.46497 * 109.47375 * 184.99935 * 15 13 12 17 17 C 1.36935 * 120.00372 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00147 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00539 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99408 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00387 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47076 * 89.99798 * 21 19 17 23 23 H 1.48499 * 109.46922 * 210.00053 * 21 19 17 24 24 H 1.48498 * 109.47000 * 329.99618 * 21 19 17 25 25 C 1.47434 * 125.64822 * 179.97438 * 10 8 7 26 26 C 1.34352 * 125.74559 * 270.34321 * 3 2 1 27 27 Cl 1.73596 * 126.32378 * 359.97438 * 26 3 2 28 28 H 1.08998 * 109.47109 * 60.00748 * 1 2 3 29 29 H 1.09002 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47147 * 300.00338 * 1 2 3 31 31 H 1.09000 * 109.47147 * 239.99662 * 2 1 3 32 32 H 1.09007 * 109.47093 * 119.99847 * 2 1 3 33 33 H 1.08998 * 109.47401 * 269.97605 * 6 5 4 34 34 H 1.09004 * 109.47070 * 29.97960 * 6 5 4 35 35 H 1.09001 * 109.47239 * 149.97902 * 6 5 4 36 36 H 1.09008 * 109.88015 * 61.60739 * 11 10 8 37 37 H 1.08999 * 110.01338 * 300.51726 * 11 10 8 38 38 H 1.09002 * 110.72109 * 140.55794 * 12 11 10 39 39 H 1.09003 * 110.72356 * 263.65620 * 12 11 10 40 40 H 1.08994 * 109.47586 * 305.00130 * 15 13 12 41 41 H 1.09000 * 109.47024 * 65.00200 * 15 13 12 42 42 H 0.97005 * 120.00103 * 0.02562 * 16 15 13 43 43 H 0.96999 * 119.99725 * 179.97438 * 20 19 17 44 44 H 1.09000 * 110.36877 * 274.74580 * 25 10 8 45 45 H 1.09001 * 110.36202 * 36.96356 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2912 2.1518 1.1355 5 6 2.7067 3.3293 0.7588 6 6 3.1073 4.4602 1.6706 7 6 2.7156 3.3590 -0.6542 8 6 3.1153 4.4946 -1.5029 9 8 4.2736 4.6131 -1.8543 10 7 2.1975 5.4025 -1.8899 11 6 0.7700 5.3811 -1.5388 12 6 0.1112 6.5969 -2.2239 13 6 1.0907 6.9209 -3.3828 14 1 0.8997 6.2829 -4.2457 15 6 1.0135 8.3993 -3.7689 16 7 1.8597 8.6431 -4.9397 17 6 1.9499 9.9028 -5.4690 18 1 1.3975 10.7168 -5.0231 19 6 2.7512 10.1338 -6.5786 20 7 3.4240 9.1417 -7.1224 21 14 2.8749 11.8523 -7.3002 22 1 3.9927 12.5827 -6.6505 23 1 3.1270 11.7590 -8.7606 24 1 1.6031 12.5814 -7.0631 25 6 2.4588 6.5822 -2.7347 26 6 2.2738 2.1234 -1.0904 27 17 2.0869 1.6226 -2.7420 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.2350 5.0755 1.8912 34 1 3.5094 4.0538 2.5986 35 1 3.8673 5.0696 1.1815 36 1 0.6530 5.4564 -0.4576 37 1 0.3113 4.4598 -1.8977 38 1 -0.8727 6.3343 -2.6125 39 1 0.0398 7.4370 -1.5331 40 1 -0.0181 8.6596 -4.0057 41 1 1.3605 9.0110 -2.9361 42 1 2.3561 7.9122 -5.3400 43 1 3.9837 9.3029 -7.8980 44 1 2.8034 7.4170 -2.1244 45 1 3.1961 6.3439 -3.5013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266037173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:16 Heat of formation + Delta-G solvation = 23.103721 kcal Electronic energy + Delta-G solvation = -27419.820803 eV Core-core repulsion = 23499.196124 eV Total energy + Delta-G solvation = -3920.624679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69019 -40.84116 -38.75535 -38.20138 -36.41364 -35.98025 -33.93317 -32.41773 -32.18555 -31.14592 -29.96939 -28.79252 -27.22616 -25.54461 -24.42974 -23.44980 -22.72285 -21.62502 -21.30818 -20.36282 -19.17556 -18.55948 -17.83600 -17.44381 -16.71468 -16.58198 -16.49359 -15.99025 -15.57685 -15.23935 -15.16057 -15.07665 -14.67828 -14.35029 -14.22196 -14.01429 -13.78400 -13.67938 -13.48082 -13.42697 -13.18618 -13.09599 -12.97225 -12.91340 -12.74015 -12.71036 -12.29068 -12.24174 -12.10213 -11.91708 -11.86006 -11.61434 -11.58435 -11.17577 -10.91229 -10.40271 -9.85072 -9.73251 -8.97229 -7.92413 -5.21427 0.10169 0.22578 1.11774 1.35868 1.37494 1.48434 1.50767 1.58909 2.00860 2.58070 3.13301 3.39757 3.46699 3.62936 3.66703 3.83653 3.91813 3.96906 3.99554 4.14534 4.24423 4.25709 4.28598 4.46045 4.61052 4.65051 4.67272 4.69824 4.70552 4.72444 4.84737 4.89101 4.92385 5.02047 5.08471 5.16173 5.20491 5.25280 5.29439 5.44188 5.49897 5.53124 6.26770 6.29357 6.43319 7.01263 7.35413 8.12302 8.33569 9.31359 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.002508 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.160213 B =11161.304053 C =11429.563767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.341 5.341 4 N -0.279 5.279 5 C 0.117 3.883 6 C -0.078 4.078 7 C -0.273 4.273 8 C 0.610 3.390 9 O -0.580 6.580 10 N -0.603 5.603 11 C 0.106 3.894 12 C -0.110 4.110 13 C -0.096 4.096 14 H 0.074 0.926 15 C 0.165 3.835 16 N -0.749 5.749 17 C -0.241 4.241 18 H 0.080 0.920 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.974 3.026 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.265 1.265 25 C 0.120 3.880 26 C 0.158 3.842 27 Cl 0.018 6.982 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.028 0.972 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 -20.521 20.443 30.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.123 5.123 4 N -0.102 5.102 5 C -0.049 4.049 6 C -0.136 4.136 7 C -0.289 4.289 8 C 0.397 3.603 9 O -0.459 6.459 10 N -0.334 5.334 11 C -0.016 4.016 12 C -0.148 4.148 13 C -0.115 4.115 14 H 0.093 0.907 15 C 0.038 3.962 16 N -0.391 5.391 17 C -0.373 4.373 18 H 0.098 0.902 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.803 3.197 22 H -0.216 1.216 23 H -0.224 1.224 24 H -0.190 1.190 25 C -0.003 4.003 26 C -0.001 4.001 27 Cl 0.046 6.954 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.656 -21.304 21.142 31.850 hybrid contribution 1.025 0.958 -2.067 2.498 sum -9.631 -20.346 19.076 29.506 Atomic orbital electron populations 1.22164 0.92176 1.05069 1.02770 1.22352 0.96944 0.75008 1.06718 1.48942 1.49033 1.13300 1.01009 1.77225 1.23451 1.03813 1.05710 1.22604 0.96246 0.94947 0.91073 1.20405 1.03014 0.92607 0.97588 1.19606 1.19981 0.94656 0.94655 1.17065 0.83648 0.80884 0.78682 1.90800 1.20371 1.76802 1.57945 1.48513 1.10233 1.24753 1.49948 1.22191 0.78659 0.99718 1.01044 1.22656 0.98674 0.97499 0.95931 1.22431 0.94029 0.96718 0.98348 0.90722 1.20757 0.94012 0.92720 0.88676 1.42645 1.55059 1.07962 1.33455 1.19665 1.21494 0.88093 1.08062 0.90187 1.25611 1.00502 1.01243 0.99842 1.69841 1.34844 1.32278 1.25359 0.85127 0.78087 0.79673 0.76809 1.21622 1.22438 1.19014 1.22189 0.98141 0.86944 0.93013 1.21945 1.01845 0.91810 0.84451 1.98453 1.95760 1.90889 1.10256 0.92517 0.87366 0.91994 0.87197 0.86125 0.87685 0.88401 0.91188 0.89312 0.90940 0.87505 0.88633 0.94611 0.95398 0.79704 0.94165 0.91439 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 10.24 71.98 0.74 -0.50 16 2 C 0.11 1.11 6.96 86.38 0.60 1.71 16 3 N -0.34 -6.45 3.58 -336.04 -1.20 -7.65 16 4 N -0.28 -5.97 12.49 -46.66 -0.58 -6.56 16 5 C 0.12 2.66 7.26 43.53 0.32 2.98 16 6 C -0.08 -1.32 10.28 71.23 0.73 -0.59 16 7 C -0.27 -7.30 5.06 -20.12 -0.10 -7.40 16 8 C 0.61 20.14 7.23 86.62 0.63 20.76 16 9 O -0.58 -24.74 17.36 -4.11 -0.07 -24.81 16 10 N -0.60 -17.65 3.33 -815.35 -2.71 -20.36 16 11 C 0.11 2.15 6.47 86.73 0.56 2.71 16 12 C -0.11 -2.17 6.41 31.78 0.20 -1.96 16 13 C -0.10 -2.91 3.06 -9.33 -0.03 -2.94 16 14 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.16 6.20 5.72 86.38 0.49 6.69 16 16 N -0.75 -38.14 5.55 -343.48 -1.91 -40.04 16 17 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 18 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 19 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 20 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 21 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.12 4.10 6.34 86.93 0.55 4.65 16 26 C 0.16 3.64 7.54 84.32 0.64 4.28 16 27 Cl 0.02 0.39 28.57 -2.72 -0.08 0.32 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.11 0.87 7.78 -2.39 -0.02 0.85 16 32 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.41 8.01 -2.39 -0.02 1.39 16 36 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.10 1.65 8.04 -2.39 -0.02 1.63 16 40 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.03 1.04 7.97 -2.39 -0.02 1.02 16 42 H 0.37 20.60 7.67 -92.70 -0.71 19.89 16 43 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.07 2.35 7.91 -2.39 -0.02 2.33 16 45 H 0.04 1.87 8.03 -2.39 -0.02 1.85 16 Total: -1.00 -77.72 393.99 2.68 -75.04 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.29 Total: 22.71 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.64 Total: 13.50 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -6.12 Total: -135.58 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.32 kcal Total: -77.72 2.68 -75.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266037173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.145 kcal (2) G-P(sol) polarization free energy of solvation -77.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds