Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46503 * 109.47014 * 184.99892 * 4 2 1 6 6 C 1.34778 * 119.99700 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99824 * 180.02562 * 6 5 4 9 9 S 1.81005 * 109.47392 * 180.02562 * 8 6 5 10 10 C 1.76197 * 99.99982 * 180.02562 * 9 8 6 11 11 H 1.07993 * 120.00217 * 0.02562 * 10 9 8 12 12 C 1.38794 * 119.99755 * 180.02562 * 10 9 8 13 13 N 1.31635 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00148 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47448 * 89.99589 * 14 12 10 16 16 H 1.48500 * 109.47389 * 210.00053 * 14 12 10 17 17 H 1.48506 * 109.46914 * 329.99643 * 14 12 10 18 18 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 19 19 C 1.46904 * 110.99949 * 274.99434 * 18 2 1 20 20 C 1.50702 * 109.47107 * 180.02562 * 19 18 2 21 21 N 1.31068 * 126.65753 * 90.02935 * 20 19 18 22 22 N 1.28841 * 107.98609 * 179.97438 * 21 20 19 23 23 N 1.28731 * 109.40200 * 0.02562 * 22 21 20 24 24 N 1.29021 * 108.80783 * 359.73987 * 23 22 21 25 25 C 1.46503 * 126.44077 * 180.24746 * 24 23 22 26 26 C 1.53004 * 117.49846 * 8.80336 * 25 24 23 27 27 C 1.53004 * 60.00080 * 252.50937 * 26 25 24 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 32 32 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 33 33 H 0.96997 * 120.00215 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.47446 * 300.00685 * 8 6 5 35 35 H 1.09008 * 109.46819 * 60.00695 * 8 6 5 36 36 H 0.97003 * 119.99852 * 179.97438 * 13 12 10 37 37 H 1.00896 * 111.00544 * 38.95527 * 18 2 1 38 38 H 1.09002 * 109.47300 * 300.00868 * 19 18 2 39 39 H 1.09006 * 109.46967 * 60.00497 * 19 18 2 40 40 H 1.08994 * 115.54888 * 154.51396 * 25 24 23 41 41 H 1.08999 * 117.49354 * 359.97438 * 26 25 24 42 42 H 1.08997 * 117.49718 * 145.01870 * 26 25 24 43 43 H 1.08993 * 117.49965 * 252.50994 * 27 26 25 44 44 H 1.08996 * 117.51393 * 107.48008 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1731 -1.4292 -2.1906 7 8 3.5699 -1.8843 -3.1393 8 6 5.6749 -1.5379 -2.1300 9 16 6.2783 -2.3911 -3.6079 10 6 8.0099 -2.3794 -3.2823 11 1 8.3860 -1.9275 -2.3765 12 6 8.8905 -2.9511 -4.1901 13 7 8.4320 -3.5024 -5.2940 14 14 10.7263 -2.9394 -3.8447 15 1 11.0963 -4.1651 -3.0923 16 1 11.4714 -2.9030 -5.1287 17 1 11.0706 -1.7408 -3.0384 18 7 2.0196 -0.6925 1.1995 19 6 2.0825 0.2226 2.3469 20 6 2.5884 -0.5215 3.5558 21 7 3.8385 -0.6533 3.9270 22 7 3.8609 -1.3555 5.0071 23 7 2.6577 -1.6754 5.3341 24 7 1.8439 -1.1755 4.4667 25 6 0.3841 -1.2990 4.4706 26 6 -0.2694 -1.9147 5.7095 27 6 -0.2058 -2.7092 4.4034 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7517 -0.1584 -2.1369 33 1 3.9825 -0.4628 -0.4316 34 1 6.1099 -0.5395 -2.0842 35 1 5.9629 -2.1008 -1.2421 36 1 9.0476 -3.9016 -5.9286 37 1 1.4495 -1.4979 1.4101 38 1 2.7589 1.0462 2.1182 39 1 1.0871 0.6164 2.5526 40 1 -0.1564 -0.5025 3.9593 41 1 0.3868 -2.2282 6.5213 42 1 -1.2401 -1.5232 6.0136 43 1 -1.1345 -2.8403 3.8483 44 1 0.4923 -3.5449 4.3560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266923148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = 80.872287 kcal Electronic energy + Delta-G solvation = -26343.852685 eV Core-core repulsion = 22460.069496 eV Total energy + Delta-G solvation = -3883.783189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.25944 -40.58525 -38.92857 -38.56345 -35.52914 -34.69495 -34.58255 -33.93774 -31.69373 -30.56339 -27.72641 -27.25521 -26.58533 -26.13617 -23.86660 -23.31142 -22.12877 -22.06275 -21.56340 -19.79669 -18.85450 -18.14296 -17.76382 -17.56568 -16.88470 -16.87014 -16.58493 -16.15496 -16.07885 -15.74481 -15.57103 -14.77904 -14.58718 -14.45973 -14.38011 -14.13376 -13.78988 -13.57945 -13.29454 -13.17234 -13.16348 -13.15832 -12.98831 -12.88832 -12.64397 -12.62021 -12.51023 -12.22348 -11.89423 -11.71421 -11.70452 -11.48777 -11.14298 -10.93907 -10.89802 -10.27726 -9.96846 -9.52482 -8.65455 -8.34562 -6.12015 0.10027 0.91018 1.10019 1.28464 1.41927 1.47340 1.59187 1.69302 2.27327 2.41070 2.48219 2.77170 2.99118 3.14300 3.23915 3.35251 3.44061 3.64300 3.71282 3.86552 4.02592 4.13396 4.22123 4.27912 4.31846 4.36782 4.52304 4.54097 4.56460 4.64894 4.71445 4.75688 4.85347 4.92086 4.94234 5.01068 5.05641 5.26846 5.35447 5.42159 5.56480 5.84812 6.20278 6.24529 6.63509 7.06728 7.34915 7.50844 8.74686 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013479 B = 0.002243 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.749588 B =12482.155361 C =13904.852769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.089 3.911 3 H 0.108 0.892 4 C 0.128 3.872 5 N -0.699 5.699 6 C 0.531 3.469 7 O -0.571 6.571 8 C -0.130 4.130 9 S -0.148 6.148 10 C -0.547 4.547 11 H 0.079 0.921 12 C 0.013 3.987 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.259 1.259 18 N -0.692 5.692 19 C 0.149 3.851 20 C 0.197 3.803 21 N -0.323 5.323 22 N -0.117 5.117 23 N -0.111 5.111 24 N -0.268 5.268 25 C 0.028 3.972 26 C -0.152 4.152 27 C -0.157 4.157 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.416 0.584 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.271 0.729 37 H 0.350 0.650 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.200 0.800 41 H 0.093 0.907 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.878 11.435 22.891 37.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.020 4.020 3 H 0.126 0.874 4 C 0.003 3.997 5 N -0.352 5.352 6 C 0.317 3.683 7 O -0.450 6.450 8 C -0.281 4.281 9 S 0.079 5.921 10 C -0.695 4.695 11 H 0.097 0.903 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.183 1.183 18 N -0.326 5.326 19 C 0.017 3.983 20 C -0.081 4.081 21 N -0.173 5.173 22 N -0.110 5.110 23 N -0.097 5.097 24 N -0.071 5.071 25 C -0.073 4.073 26 C -0.190 4.190 27 C -0.195 4.195 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.170 0.830 38 H 0.139 0.861 39 H 0.121 0.879 40 H 0.217 0.783 41 H 0.111 0.889 42 H 0.168 0.832 43 H 0.169 0.831 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.142 10.240 21.897 35.605 hybrid contribution 0.756 0.384 1.082 1.374 sum -25.386 10.624 22.979 35.851 Atomic orbital electron populations 1.22397 0.93428 1.03360 1.04297 1.21750 0.95039 0.98299 0.86926 0.87391 1.21512 0.79055 1.00670 0.98420 1.45605 1.08121 1.58939 1.22561 1.19954 0.88625 0.77324 0.82428 1.90670 1.70347 1.48957 1.35035 1.23366 0.95579 1.05442 1.03727 1.85447 1.05660 1.75257 1.25699 1.23198 0.91875 1.44425 1.10000 0.90274 1.26116 1.05182 0.93807 0.94025 1.70182 1.37360 1.36561 1.10561 0.84969 0.75842 0.79217 0.78046 1.19431 1.19961 1.18341 1.60286 1.59421 1.09820 1.03030 1.20603 1.02660 0.93130 0.81885 1.26456 0.86575 0.98551 0.96545 1.74982 1.18557 1.16014 1.07707 1.78669 1.12148 1.11710 1.08472 1.78735 0.96500 1.18530 1.15890 1.48240 1.10290 1.32710 1.15812 1.23119 0.71342 1.02915 1.09955 1.23535 1.03317 1.00851 0.91247 1.23618 1.03676 0.91203 1.00987 0.91041 0.91851 0.89510 0.92972 0.91431 0.74723 0.87545 0.88238 0.91963 0.83002 0.86083 0.87859 0.78322 0.88880 0.83246 0.83082 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.43 9.16 71.98 0.66 0.22 16 2 C 0.09 0.68 2.75 44.92 0.12 0.80 16 3 H 0.11 0.57 7.80 -2.39 -0.02 0.55 16 4 C 0.13 2.37 5.37 86.38 0.46 2.84 16 5 N -0.70 -17.79 5.39 -463.07 -2.50 -20.29 16 6 C 0.53 20.32 7.85 87.66 0.69 21.01 16 7 O -0.57 -26.87 15.86 -3.02 -0.05 -26.92 16 8 C -0.13 -5.51 6.16 71.23 0.44 -5.07 16 9 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 10 C -0.55 -32.54 9.50 67.95 0.65 -31.90 16 11 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 12 C 0.01 0.79 5.49 84.86 0.47 1.26 16 13 N -0.91 -57.20 13.22 21.65 0.29 -56.91 16 14 Si 1.00 45.28 29.55 68.60 2.03 47.30 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 18 N -0.69 -6.19 5.68 -495.54 -2.81 -9.00 16 19 C 0.15 0.93 5.82 85.56 0.50 1.43 16 20 C 0.20 3.10 7.65 138.14 1.06 4.16 16 21 N -0.32 -8.36 12.36 -50.45 -0.62 -8.98 16 22 N -0.12 -3.37 13.43 37.01 0.50 -2.88 16 23 N -0.11 -2.53 12.69 37.02 0.47 -2.06 16 24 N -0.27 -3.80 3.67 -317.81 -1.17 -4.97 16 25 C 0.03 0.09 6.63 44.99 0.30 0.39 16 26 C -0.15 -0.41 10.15 30.60 0.31 -0.10 16 27 C -0.16 -0.42 10.46 30.60 0.32 -0.10 16 28 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.06 0.21 8.13 -2.39 -0.02 0.19 16 30 H 0.09 -0.23 7.45 -2.39 -0.02 -0.24 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.42 8.90 8.14 -92.71 -0.75 8.14 16 34 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 35 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 36 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 37 H 0.35 2.84 8.46 -89.70 -0.76 2.08 16 38 H 0.12 0.75 8.06 -2.39 -0.02 0.74 16 39 H 0.10 -0.23 6.64 -2.38 -0.02 -0.25 16 40 H 0.20 -1.07 7.41 -2.39 -0.02 -1.09 16 41 H 0.09 0.76 7.85 -2.39 -0.02 0.75 16 42 H 0.15 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.15 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -92.03 391.92 0.47 -91.56 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -0.47 Total: 7.88 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.97 Total: -5.06 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -5.85 Total: -105.09 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -92.03 0.47 -91.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266923148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.434 kcal (2) G-P(sol) polarization free energy of solvation -92.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds