Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47209 * 2 1 4 4 N 1.39925 * 125.74649 * 269.99828 * 3 2 1 5 5 C 1.30416 * 108.95706 * 179.71080 * 4 3 2 6 6 C 1.50700 * 125.97514 * 180.26150 * 5 4 3 7 7 C 1.41341 * 108.04787 * 0.44362 * 5 4 3 8 8 C 1.47303 * 126.43330 * 179.81642 * 7 5 4 9 9 O 1.21623 * 119.99810 * 269.71188 * 8 7 5 10 10 N 1.34773 * 120.00120 * 89.71756 * 8 7 5 11 11 C 1.46493 * 120.00023 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47170 * 179.97438 * 11 10 8 13 13 N 1.46502 * 109.47247 * 179.97438 * 12 11 10 14 14 C 1.36933 * 120.00339 * 270.00603 * 13 12 11 15 15 H 1.07995 * 120.00560 * 140.53619 * 14 13 12 16 16 C 1.38814 * 119.99406 * 320.53203 * 14 13 12 17 17 N 1.31612 * 120.00673 * 340.28245 * 16 14 13 18 18 Si 1.86808 * 119.99645 * 160.28451 * 16 14 13 19 19 H 1.48502 * 109.47107 * 89.99984 * 18 16 14 20 20 H 1.48501 * 109.47081 * 210.00085 * 18 16 14 21 21 H 1.48496 * 109.47165 * 330.00187 * 18 16 14 22 22 C 1.46499 * 119.99505 * 90.00162 * 13 12 11 23 23 C 1.53000 * 117.49756 * 183.28633 * 22 13 12 24 24 C 1.52994 * 60.00104 * 252.51432 * 23 22 13 25 25 C 1.34347 * 125.75353 * 89.99333 * 3 2 1 26 26 Cl 1.73609 * 126.31738 * 359.97438 * 25 3 2 27 27 H 1.08994 * 109.47153 * 300.00196 * 1 2 3 28 28 H 1.08997 * 109.46957 * 60.00371 * 1 2 3 29 29 H 1.09002 * 109.46746 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47684 * 239.99134 * 2 1 3 31 31 H 1.09005 * 109.47147 * 119.99419 * 2 1 3 32 32 H 1.09005 * 109.47474 * 270.21487 * 6 5 4 33 33 H 1.08994 * 109.47185 * 30.21413 * 6 5 4 34 34 H 1.09000 * 109.47225 * 150.22024 * 6 5 4 35 35 H 0.97004 * 119.99736 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47606 * 59.99848 * 11 10 8 37 37 H 1.08999 * 109.47299 * 299.99361 * 11 10 8 38 38 H 1.09002 * 109.46664 * 59.99658 * 12 11 10 39 39 H 1.08998 * 109.47308 * 300.00179 * 12 11 10 40 40 H 0.97000 * 120.00354 * 175.01784 * 17 16 14 41 41 H 1.09001 * 115.55457 * 328.99834 * 22 13 12 42 42 H 1.09004 * 117.49643 * 0.02562 * 23 22 13 43 43 H 1.08997 * 117.49838 * 145.01935 * 23 22 13 44 44 H 1.09006 * 117.49900 * 252.51071 * 24 23 22 45 45 H 1.08996 * 117.52328 * 107.48177 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2909 2.1519 -1.1356 5 6 2.7012 3.3311 -0.7589 6 6 3.0938 4.4648 -1.6708 7 6 2.7173 3.3584 0.6541 8 6 3.1186 4.4936 1.5027 9 8 4.2774 4.6113 1.8527 10 7 2.2017 5.4017 1.8913 11 6 2.6007 6.5304 2.7356 12 6 1.3796 7.4043 3.0293 13 7 1.7785 8.5327 3.8742 14 6 1.7367 8.4155 5.2378 15 1 2.5203 8.8489 5.8414 16 6 0.6869 7.7395 5.8443 17 7 -0.4401 7.5520 5.1910 18 14 0.8737 7.0960 7.5881 19 1 0.4317 8.1374 8.5501 20 1 0.0401 5.8789 7.7585 21 1 2.2977 6.7602 7.8419 22 6 2.2223 9.7866 3.2600 23 6 2.6987 10.9008 4.1940 24 6 1.3526 11.0264 3.4778 25 6 2.2799 2.1213 1.0903 26 17 2.1010 1.6177 2.7421 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 4.1585 4.3987 -1.8952 33 1 2.5227 4.4007 -2.5969 34 1 2.8844 5.4152 -1.1798 35 1 1.2775 5.3079 1.6118 36 1 3.3550 7.1228 2.2177 37 1 3.0132 6.1554 3.6723 38 1 0.6251 6.8121 3.5470 39 1 0.9674 7.7793 2.0925 40 1 -1.1469 7.0180 5.5863 41 1 2.7246 9.6869 2.2978 42 1 2.6823 10.7008 5.2654 43 1 3.5148 11.5343 3.8465 44 1 1.2830 11.7425 2.6589 45 1 0.4501 10.9090 4.0775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267337870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = 77.361804 kcal Electronic energy + Delta-G solvation = -27307.294352 eV Core-core repulsion = 23389.022480 eV Total energy + Delta-G solvation = -3918.271872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62656 -38.87959 -37.14523 -37.05912 -35.17468 -34.65558 -33.15113 -31.61000 -31.01044 -30.15295 -28.03068 -27.42955 -24.66883 -23.87557 -22.34335 -21.54423 -21.19816 -20.60668 -19.90604 -19.65532 -17.83399 -16.68413 -16.09787 -15.89749 -15.49561 -15.40379 -15.11012 -14.71491 -14.55857 -14.32873 -13.82387 -13.64024 -13.41175 -13.26617 -12.86377 -12.63241 -12.61341 -12.53952 -12.49154 -11.98626 -11.91045 -11.82054 -11.66218 -11.54397 -11.04383 -10.88642 -10.73161 -10.71511 -10.33586 -10.15213 -9.86522 -9.67574 -9.61111 -9.45039 -9.26796 -8.77144 -8.55368 -8.46388 -6.58664 -5.84157 -3.50582 1.14753 1.27236 2.19867 2.25293 2.85010 3.31811 3.40117 3.44942 3.64696 4.10073 4.42731 4.50166 4.53595 4.76722 4.79622 4.94798 5.07585 5.20605 5.25709 5.28427 5.30620 5.36324 5.47652 5.62449 5.66915 5.70757 5.92389 6.05683 6.12262 6.18350 6.23656 6.31176 6.37487 6.52081 6.53713 6.63847 6.87818 6.99985 7.09001 7.24718 7.27266 7.50306 7.76683 7.94429 8.44877 8.59579 9.09715 9.70413 10.28289 11.11150 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.003254 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.644389 B = 8602.278426 C = 9971.249039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 N -0.352 5.352 4 N -0.276 5.276 5 C 0.119 3.881 6 C -0.077 4.077 7 C -0.251 4.251 8 C 0.590 3.410 9 O -0.535 6.535 10 N -0.708 5.708 11 C 0.098 3.902 12 C 0.142 3.858 13 N -0.547 5.547 14 C -0.261 4.261 15 H 0.065 0.935 16 C 0.018 3.982 17 N -0.883 5.883 18 Si 0.894 3.106 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.120 3.880 23 C -0.195 4.195 24 C -0.219 4.219 25 C 0.157 3.843 26 Cl 0.014 6.986 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.033 0.967 40 H 0.255 0.745 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -13.177 -12.781 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.135 5.135 4 N -0.099 5.099 5 C -0.047 4.047 6 C -0.136 4.136 7 C -0.268 4.268 8 C 0.373 3.627 9 O -0.412 6.412 10 N -0.358 5.358 11 C -0.027 4.027 12 C 0.015 3.985 13 N -0.264 5.264 14 C -0.391 4.391 15 H 0.083 0.917 16 C -0.183 4.183 17 N -0.524 5.524 18 Si 0.722 3.278 19 H -0.211 1.211 20 H -0.214 1.214 21 H -0.201 1.201 22 C 0.011 3.989 23 C -0.233 4.233 24 C -0.260 4.260 25 C 0.001 3.999 26 Cl 0.042 6.958 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.232 0.768 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.541 -14.070 -13.251 19.389 hybrid contribution -0.370 -0.138 1.781 1.824 sum 1.170 -14.207 -11.471 18.297 Atomic orbital electron populations 1.22197 0.93466 1.03534 1.03735 1.21879 0.95924 0.76993 1.05101 1.48555 1.50420 1.12532 1.01951 1.77220 1.23443 1.03905 1.05288 1.22294 0.96563 0.94179 0.91703 1.20300 1.02535 0.93234 0.97484 1.19950 1.17531 0.95108 0.94170 1.17102 0.85398 0.81041 0.79195 1.90787 1.18616 1.75687 1.56068 1.46083 1.11647 1.26324 1.51763 1.22379 1.00666 0.86211 0.93411 1.21001 0.94060 0.89607 0.93834 1.43164 1.75340 1.05560 1.02307 1.19029 1.03122 1.35212 0.81710 0.91725 1.25216 0.93759 1.01708 0.97645 1.70047 1.03564 1.39649 1.39134 0.86461 0.77943 0.78465 0.84916 1.21104 1.21441 1.20076 1.21242 0.99334 0.83016 0.95318 1.23019 0.96882 1.03296 1.00086 1.23336 0.95341 1.04255 1.03083 1.21974 1.02106 0.92047 0.83812 1.98454 1.95915 1.90919 1.10507 0.91596 0.91229 0.90033 0.87832 0.88557 0.89680 0.90091 0.89778 0.76817 0.92883 0.91436 0.88387 0.94884 0.93531 0.89507 0.88446 0.90759 0.91266 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 2 C 0.12 0.93 6.97 -4.04 -0.03 0.90 16 3 N -0.35 -4.15 3.58 -57.57 -0.21 -4.35 16 4 N -0.28 -3.57 12.49 33.90 0.42 -3.15 16 5 C 0.12 1.58 7.26 -82.01 -0.60 0.98 16 6 C -0.08 -0.79 10.28 36.01 0.37 -0.42 16 7 C -0.25 -3.79 5.88 -105.02 -0.62 -4.41 16 8 C 0.59 10.36 7.20 -12.58 -0.09 10.27 16 9 O -0.53 -11.38 17.11 5.26 0.09 -11.29 16 10 N -0.71 -11.95 5.55 -61.42 -0.34 -12.29 16 11 C 0.10 1.94 6.00 -4.04 -0.02 1.92 16 12 C 0.14 3.06 5.45 -4.04 -0.02 3.04 16 13 N -0.55 -13.00 2.75 -165.66 -0.46 -13.45 16 14 C -0.26 -6.83 8.47 -15.06 -0.13 -6.96 16 15 H 0.07 1.71 6.74 -52.49 -0.35 1.36 16 16 C 0.02 0.47 4.98 -17.43 -0.09 0.38 16 17 N -0.88 -24.09 11.50 55.49 0.64 -23.45 16 18 Si 0.89 21.07 29.60 -169.99 -5.03 16.04 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.12 2.51 6.56 -67.93 -0.45 2.06 16 23 C -0.19 -3.81 9.80 -26.73 -0.26 -4.08 16 24 C -0.22 -4.41 10.36 -26.73 -0.28 -4.68 16 25 C 0.16 2.14 7.54 -16.44 -0.12 2.02 16 26 Cl 0.01 0.18 28.56 -51.86 -1.48 -1.30 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.61 7.77 -51.93 -0.40 0.21 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 35 H 0.40 5.93 8.46 -40.82 -0.35 5.59 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.10 2.38 5.59 -51.93 -0.29 2.09 16 39 H 0.03 0.66 8.07 -51.93 -0.42 0.25 16 40 H 0.25 6.75 8.32 -40.82 -0.34 6.41 16 41 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.10 2.08 6.46 -51.93 -0.34 1.75 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -31.39 396.57 -9.11 -40.50 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.77 Total: 6.49 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.95 Total: 0.27 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.06 Total: -56.69 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.48 Total: -1.30 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.39 -9.11 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267337870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.858 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds