Wall clock time and date at job start Sat Apr 11 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47209 * 2 1 4 4 N 1.39925 * 125.74649 * 269.99828 * 3 2 1 5 5 C 1.30416 * 108.95706 * 179.71080 * 4 3 2 6 6 C 1.50700 * 125.97514 * 180.26150 * 5 4 3 7 7 C 1.41341 * 108.04787 * 0.44362 * 5 4 3 8 8 C 1.47303 * 126.43330 * 179.81642 * 7 5 4 9 9 O 1.21623 * 119.99810 * 269.71188 * 8 7 5 10 10 N 1.34773 * 120.00120 * 89.71756 * 8 7 5 11 11 C 1.46493 * 120.00023 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47170 * 179.97438 * 11 10 8 13 13 N 1.46502 * 109.47247 * 179.97438 * 12 11 10 14 14 C 1.36933 * 120.00339 * 270.00603 * 13 12 11 15 15 H 1.07995 * 120.00560 * 140.53619 * 14 13 12 16 16 C 1.38814 * 119.99406 * 320.53203 * 14 13 12 17 17 N 1.31612 * 120.00673 * 340.28245 * 16 14 13 18 18 Si 1.86808 * 119.99645 * 160.28451 * 16 14 13 19 19 H 1.48502 * 109.47107 * 89.99984 * 18 16 14 20 20 H 1.48501 * 109.47081 * 210.00085 * 18 16 14 21 21 H 1.48496 * 109.47165 * 330.00187 * 18 16 14 22 22 C 1.46499 * 119.99505 * 90.00162 * 13 12 11 23 23 C 1.53000 * 117.49756 * 183.28633 * 22 13 12 24 24 C 1.52994 * 60.00104 * 252.51432 * 23 22 13 25 25 C 1.34347 * 125.75353 * 89.99333 * 3 2 1 26 26 Cl 1.73609 * 126.31738 * 359.97438 * 25 3 2 27 27 H 1.08994 * 109.47153 * 300.00196 * 1 2 3 28 28 H 1.08997 * 109.46957 * 60.00371 * 1 2 3 29 29 H 1.09002 * 109.46746 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47684 * 239.99134 * 2 1 3 31 31 H 1.09005 * 109.47147 * 119.99419 * 2 1 3 32 32 H 1.09005 * 109.47474 * 270.21487 * 6 5 4 33 33 H 1.08994 * 109.47185 * 30.21413 * 6 5 4 34 34 H 1.09000 * 109.47225 * 150.22024 * 6 5 4 35 35 H 0.97004 * 119.99736 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47606 * 59.99848 * 11 10 8 37 37 H 1.08999 * 109.47299 * 299.99361 * 11 10 8 38 38 H 1.09002 * 109.46664 * 59.99658 * 12 11 10 39 39 H 1.08998 * 109.47308 * 300.00179 * 12 11 10 40 40 H 0.97000 * 120.00354 * 175.01784 * 17 16 14 41 41 H 1.09001 * 115.55457 * 328.99834 * 22 13 12 42 42 H 1.09004 * 117.49643 * 0.02562 * 23 22 13 43 43 H 1.08997 * 117.49838 * 145.01935 * 23 22 13 44 44 H 1.09006 * 117.49900 * 252.51071 * 24 23 22 45 45 H 1.08996 * 117.52328 * 107.48177 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2909 2.1519 -1.1356 5 6 2.7012 3.3311 -0.7589 6 6 3.0938 4.4648 -1.6708 7 6 2.7173 3.3584 0.6541 8 6 3.1186 4.4936 1.5027 9 8 4.2774 4.6113 1.8527 10 7 2.2017 5.4017 1.8913 11 6 2.6007 6.5304 2.7356 12 6 1.3796 7.4043 3.0293 13 7 1.7785 8.5327 3.8742 14 6 1.7367 8.4155 5.2378 15 1 2.5203 8.8489 5.8414 16 6 0.6869 7.7395 5.8443 17 7 -0.4401 7.5520 5.1910 18 14 0.8737 7.0960 7.5881 19 1 0.4317 8.1374 8.5501 20 1 0.0401 5.8789 7.7585 21 1 2.2977 6.7602 7.8419 22 6 2.2223 9.7866 3.2600 23 6 2.6987 10.9008 4.1940 24 6 1.3526 11.0264 3.4778 25 6 2.2799 2.1213 1.0903 26 17 2.1010 1.6177 2.7421 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 4.1585 4.3987 -1.8952 33 1 2.5227 4.4007 -2.5969 34 1 2.8844 5.4152 -1.1798 35 1 1.2775 5.3079 1.6118 36 1 3.3550 7.1228 2.2177 37 1 3.0132 6.1554 3.6723 38 1 0.6251 6.8121 3.5470 39 1 0.9674 7.7793 2.0925 40 1 -1.1469 7.0180 5.5863 41 1 2.7246 9.6869 2.2978 42 1 2.6823 10.7008 5.2654 43 1 3.5148 11.5343 3.8465 44 1 1.2830 11.7425 2.6589 45 1 0.4501 10.9090 4.0775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267337870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:37 Heat of formation + Delta-G solvation = 58.550961 kcal Electronic energy + Delta-G solvation = -27308.110051 eV Core-core repulsion = 23389.022480 eV Total energy + Delta-G solvation = -3919.087572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.64010 -40.32755 -38.77205 -38.18643 -36.26168 -35.96901 -34.92962 -32.76237 -32.39537 -31.38911 -29.28278 -28.65798 -26.39059 -24.98850 -23.57090 -22.98321 -22.71683 -21.72787 -21.53241 -20.97101 -19.00690 -18.13631 -17.60412 -17.19096 -17.13139 -16.66652 -16.43497 -16.20328 -15.86998 -15.50393 -15.27153 -14.81090 -14.45264 -14.41838 -14.31326 -13.98978 -13.74719 -13.67698 -13.39961 -13.23946 -13.17785 -12.92065 -12.90789 -12.71184 -12.60866 -12.49246 -12.29499 -12.13756 -11.92142 -11.90534 -11.64819 -11.32986 -11.15340 -10.86956 -10.49400 -10.38830 -10.04744 -9.84392 -8.51134 -7.81427 -5.52140 0.11919 0.23951 1.15620 1.38127 1.42050 1.46145 1.47103 1.54838 2.25780 2.50638 3.16243 3.21478 3.43363 3.60313 3.67433 3.93446 3.95996 4.00272 4.19051 4.24652 4.34212 4.40704 4.44571 4.56014 4.63701 4.65734 4.69207 4.71642 4.76478 4.83928 4.94297 4.98285 5.07577 5.14739 5.25218 5.29281 5.34369 5.46942 5.51240 5.58929 5.67555 5.75722 6.28442 6.45579 6.55970 7.13747 7.20663 7.81446 8.33241 9.08743 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.003254 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.644389 B = 8602.278426 C = 9971.249039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 N -0.342 5.342 4 N -0.281 5.281 5 C 0.117 3.883 6 C -0.077 4.077 7 C -0.280 4.280 8 C 0.598 3.402 9 O -0.576 6.576 10 N -0.699 5.699 11 C 0.121 3.879 12 C 0.150 3.850 13 N -0.565 5.565 14 C -0.265 4.265 15 H 0.056 0.944 16 C -0.023 4.023 17 N -0.906 5.906 18 Si 0.944 3.056 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.100 3.900 23 C -0.184 4.184 24 C -0.212 4.212 25 C 0.156 3.844 26 Cl 0.017 6.983 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.252 0.748 41 H 0.113 0.887 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -13.806 -14.293 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.124 5.124 4 N -0.104 5.104 5 C -0.049 4.049 6 C -0.136 4.136 7 C -0.296 4.296 8 C 0.383 3.617 9 O -0.455 6.455 10 N -0.349 5.349 11 C -0.005 4.005 12 C 0.024 3.976 13 N -0.282 5.282 14 C -0.396 4.396 15 H 0.073 0.927 16 C -0.222 4.222 17 N -0.549 5.549 18 Si 0.772 3.228 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.007 4.007 23 C -0.222 4.222 24 C -0.252 4.252 25 C -0.002 4.002 26 Cl 0.045 6.955 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.131 0.869 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.673 -14.711 -14.789 20.927 hybrid contribution -0.423 0.026 2.218 2.258 sum 1.250 -14.685 -12.571 19.371 Atomic orbital electron populations 1.22171 0.92480 1.05046 1.02622 1.22338 0.96717 0.75091 1.06792 1.48940 1.49024 1.13438 1.01037 1.77202 1.23621 1.03881 1.05715 1.22668 0.96093 0.94927 0.91163 1.20416 1.03301 0.92047 0.97793 1.19782 1.20077 0.94889 0.94847 1.17357 0.84583 0.81198 0.78537 1.90759 1.20327 1.76713 1.57716 1.45925 1.12287 1.25610 1.51069 1.21899 0.99622 0.86573 0.92425 1.20849 0.93933 0.89151 0.93700 1.43361 1.75667 1.07287 1.01910 1.19136 1.02569 1.34749 0.83110 0.92683 1.25743 0.93688 1.02421 1.00307 1.70134 1.04004 1.40482 1.40286 0.85678 0.77568 0.77811 0.81793 1.21000 1.21424 1.20166 1.21556 1.00260 0.82206 0.96718 1.23029 0.97710 1.02909 0.98600 1.23233 0.93991 1.04481 1.03530 1.22002 1.01763 0.92046 0.84400 1.98454 1.95866 1.90835 1.10368 0.92861 0.92097 0.87219 0.85925 0.87130 0.88960 0.87999 0.90015 0.75509 0.92660 0.94654 0.90978 0.93361 0.93833 0.86895 0.90848 0.87223 0.87931 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.24 71.98 0.74 -1.11 16 2 C 0.11 1.43 6.97 86.38 0.60 2.04 16 3 N -0.34 -7.55 3.58 -336.05 -1.20 -8.76 16 4 N -0.28 -6.83 12.49 -46.66 -0.58 -7.41 16 5 C 0.12 2.98 7.26 43.53 0.32 3.30 16 6 C -0.08 -1.47 10.28 71.24 0.73 -0.74 16 7 C -0.28 -8.30 5.88 -20.12 -0.12 -8.42 16 8 C 0.60 21.10 7.20 86.63 0.62 21.72 16 9 O -0.58 -24.83 17.11 -4.10 -0.07 -24.90 16 10 N -0.70 -23.65 5.55 -466.49 -2.59 -26.24 16 11 C 0.12 4.82 6.00 86.38 0.52 5.33 16 12 C 0.15 6.53 5.45 86.38 0.47 7.00 16 13 N -0.56 -26.94 2.75 -678.03 -1.86 -28.80 16 14 C -0.27 -14.10 8.47 84.03 0.71 -13.39 16 15 H 0.06 2.98 6.74 -2.91 -0.02 2.96 16 16 C -0.02 -1.24 4.98 84.86 0.42 -0.82 16 17 N -0.91 -50.37 11.50 21.65 0.25 -50.12 16 18 Si 0.94 44.00 29.60 68.60 2.03 46.03 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 C 0.10 4.07 6.56 44.99 0.30 4.37 16 23 C -0.18 -6.94 9.80 30.59 0.30 -6.64 16 24 C -0.21 -8.21 10.36 30.59 0.32 -7.90 16 25 C 0.16 4.14 7.54 84.32 0.64 4.77 16 26 Cl 0.02 0.42 28.56 -2.72 -0.08 0.34 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.16 7.77 -2.38 -0.02 1.14 16 32 H 0.09 1.62 8.14 -2.38 -0.02 1.61 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.58 8.01 -2.39 -0.02 1.56 16 35 H 0.41 12.13 8.46 -92.71 -0.78 11.35 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.03 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.07 3.57 5.59 -2.39 -0.01 3.56 16 39 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 40 H 0.25 13.61 8.32 -92.71 -0.77 12.84 16 41 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.07 3.13 6.46 -2.39 -0.02 3.11 16 43 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 44 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 45 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -68.46 396.57 2.68 -65.78 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.23 Total: 24.56 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.56 Total: 9.51 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -5.99 Total: -121.32 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.07 Total: -24.90 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -0.08 Total: 0.34 kcal Total: -68.46 2.68 -65.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267337870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.328 kcal (2) G-P(sol) polarization free energy of solvation -68.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds