Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35733 * 117.00131 * 2 1 4 4 C 1.41852 * 126.79015 * 179.71189 * 3 2 1 5 5 C 1.36658 * 103.81624 * 180.26165 * 4 3 2 6 6 C 1.47539 * 126.88470 * 180.02562 * 5 4 3 7 7 O 1.21583 * 119.99368 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00407 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00243 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47008 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.47713 * 54.99517 * 10 9 8 12 12 C 1.53001 * 109.47025 * 294.99398 * 10 9 8 13 13 C 1.53000 * 109.47041 * 175.00095 * 10 9 8 14 14 N 1.46895 * 109.47366 * 184.99554 * 13 10 9 15 15 C 1.46900 * 111.00363 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.47275 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00115 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99532 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99397 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00666 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99778 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47255 * 60.00239 * 23 21 19 25 25 H 1.48499 * 109.47061 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47317 * 300.00134 * 23 21 19 27 27 O 1.34661 * 106.23870 * 0.02562 * 5 4 3 28 28 N 1.20874 * 111.63599 * 359.97438 * 27 5 4 29 29 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46891 * 299.99601 * 1 2 3 31 31 H 1.08996 * 109.47448 * 59.99677 * 1 2 3 32 32 H 1.08005 * 128.08742 * 0.22625 * 4 3 2 33 33 H 0.97009 * 119.99877 * 359.97438 * 8 6 5 34 34 H 1.08997 * 109.46812 * 299.99821 * 9 8 6 35 35 H 1.08995 * 109.46877 * 59.99591 * 9 8 6 36 36 H 1.08995 * 109.47877 * 300.00659 * 12 10 9 37 37 H 1.09001 * 109.46885 * 60.00358 * 12 10 9 38 38 H 1.09002 * 109.47139 * 180.02562 * 12 10 9 39 39 H 1.09005 * 109.46754 * 304.99833 * 13 10 9 40 40 H 1.09001 * 109.47277 * 64.99449 * 13 10 9 41 41 H 1.00902 * 110.99773 * 56.04297 * 14 13 10 42 42 H 1.09000 * 109.47267 * 300.00749 * 15 14 13 43 43 H 1.09007 * 109.46797 * 60.00319 * 15 14 13 44 44 H 0.96990 * 120.00238 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00158 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4506 0.0057 5 6 3.5390 2.8138 0.0091 6 6 4.7784 3.6142 0.0149 7 8 5.8603 3.0595 0.0167 8 7 4.7113 4.9603 0.0183 9 6 5.9420 5.7551 0.0246 10 6 5.5877 7.2435 0.0280 11 1 4.9274 7.4580 0.8682 12 6 4.8809 7.6025 -1.2807 13 6 6.8672 8.0719 0.1603 14 7 6.5195 9.4937 0.2838 15 6 7.7260 10.3216 0.4137 16 6 7.3303 11.7704 0.5372 17 8 6.1585 12.0827 0.5192 18 7 8.2787 12.7191 0.6686 19 6 7.9187 14.0372 0.7804 20 1 6.8753 14.3154 0.7636 21 6 8.8964 15.0153 0.9153 22 7 10.1660 14.6769 0.9353 23 14 8.4059 16.8112 1.0684 24 1 7.5511 16.9903 2.2695 25 1 9.6257 17.6481 1.1991 26 1 7.6510 17.2232 -0.1423 27 8 2.2758 3.2802 0.0060 28 7 1.4685 2.3805 0.0009 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 4.2442 0.7261 0.0076 33 1 3.8480 5.4029 0.0164 34 1 6.5228 5.5182 0.9160 35 1 6.5290 5.5228 -0.8639 36 1 5.5411 7.3880 -2.1210 37 1 3.9694 7.0123 -1.3750 38 1 4.6290 8.6629 -1.2785 39 1 7.4160 7.7537 1.0468 40 1 7.4881 7.9252 -0.7235 41 1 5.8914 9.6464 1.0586 42 1 8.2804 10.0189 1.3020 43 1 8.3532 10.1905 -0.4682 44 1 9.2158 12.4693 0.6833 45 1 10.8485 15.3597 1.0298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267980095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = -43.337469 kcal Electronic energy + Delta-G solvation = -27734.549965 eV Core-core repulsion = 23370.335014 eV Total energy + Delta-G solvation = -4364.214950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.50528 -40.18882 -39.41283 -38.39622 -37.32765 -35.11255 -33.90680 -33.73885 -32.85959 -31.92072 -31.19130 -28.23231 -27.45740 -27.14633 -25.13998 -24.07874 -23.82052 -22.84775 -21.28579 -20.79362 -19.53653 -19.05624 -18.48337 -17.87293 -17.39832 -16.79480 -16.55058 -16.16548 -15.97272 -15.91133 -15.43912 -15.40070 -14.75617 -14.70365 -14.36486 -14.24929 -14.06196 -13.69364 -13.47190 -13.27510 -12.79606 -12.67218 -12.45860 -12.42386 -12.00629 -11.96398 -11.69776 -11.52325 -11.19403 -11.15551 -10.99616 -10.94384 -10.76779 -10.44403 -10.40968 -10.21495 -9.89015 -9.58077 -9.50181 -8.47199 -8.07118 -7.96138 -6.41818 -3.82744 0.23617 1.56399 2.05274 2.09545 2.49270 2.85596 3.20074 3.25912 3.30201 3.54411 3.90701 4.06228 4.20847 4.26862 4.34570 4.50252 4.59298 4.64472 4.66565 4.74297 4.88107 4.92787 5.13846 5.14976 5.25184 5.26882 5.38952 5.47918 5.65024 5.70098 5.79662 5.84601 5.86690 5.97571 6.12552 6.26256 6.34794 6.37665 6.82017 7.17660 7.43766 7.54804 7.56329 7.62987 8.05874 8.61075 9.17606 9.54172 10.05552 10.75817 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.001369 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.898132 B =20451.561120 C =21006.289789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.204 3.796 4 C -0.152 4.152 5 C -0.059 4.059 6 C 0.605 3.395 7 O -0.508 6.508 8 N -0.707 5.707 9 C 0.122 3.878 10 C -0.101 4.101 11 H 0.080 0.920 12 C -0.143 4.143 13 C 0.066 3.934 14 N -0.666 5.666 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 O 0.119 5.881 28 N -0.387 5.387 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.191 0.809 33 H 0.410 0.590 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -28.138 -1.761 30.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.007 3.993 4 C -0.175 4.175 5 C -0.125 4.125 6 C 0.387 3.613 7 O -0.383 6.383 8 N -0.359 5.359 9 C -0.001 4.001 10 C -0.120 4.120 11 H 0.098 0.902 12 C -0.200 4.200 13 C -0.064 4.064 14 N -0.298 5.298 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 O 0.052 5.948 28 N -0.110 5.110 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.209 0.791 33 H 0.246 0.754 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.755 -27.980 -2.434 31.273 hybrid contribution 0.689 0.307 0.998 1.252 sum -13.066 -27.673 -1.435 30.636 Atomic orbital electron populations 1.23135 0.76314 1.04472 1.02586 1.86231 1.22959 1.20247 1.89252 1.21912 0.90638 0.85884 1.00831 1.22202 0.94507 0.94965 1.05793 1.24049 0.87091 0.93880 1.07472 1.16423 0.85073 0.82017 0.77752 1.90910 1.26456 1.71248 1.49701 1.45901 1.11476 1.05119 1.73382 1.21575 0.85417 0.89895 1.03214 1.21362 0.98312 0.91965 1.00377 0.90213 1.21787 0.99174 1.03359 0.95672 1.21891 0.95388 0.88305 1.00851 1.60038 1.15159 1.03641 1.50971 1.21666 0.92298 0.93209 1.01005 1.19810 0.86665 0.86518 0.84435 1.90518 1.18140 1.82400 1.55756 1.41856 1.08201 1.06271 1.63656 1.19657 0.94887 0.81440 1.47052 0.87975 1.25254 0.94762 1.00540 0.97299 1.69602 0.99530 1.34984 1.50192 0.85921 0.77654 0.81583 0.79077 1.19925 1.20979 1.19881 1.84960 1.11730 1.29700 1.68423 1.74021 1.15692 0.96730 1.24593 0.87334 0.92006 0.91991 0.79144 0.75417 0.90667 0.90388 0.92658 0.93567 0.90242 0.95171 0.90628 0.83196 0.93851 0.89574 0.77454 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.73 101.05 1.08 1.23 16 2 O -0.28 -2.25 10.57 -18.91 -0.20 -2.45 16 3 C 0.20 1.81 8.00 -16.72 -0.13 1.68 16 4 C -0.15 -1.23 10.97 -38.77 -0.43 -1.66 16 5 C -0.06 -0.49 7.29 -36.36 -0.26 -0.75 16 6 C 0.60 5.46 7.82 -12.47 -0.10 5.36 16 7 O -0.51 -6.10 16.91 5.29 0.09 -6.01 16 8 N -0.71 -5.12 5.28 -61.35 -0.32 -5.45 16 9 C 0.12 0.94 5.06 -4.04 -0.02 0.92 16 10 C -0.10 -0.85 2.57 -90.62 -0.23 -1.08 16 11 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 12 C -0.14 -1.29 8.95 37.16 0.33 -0.96 16 13 C 0.07 0.69 5.07 -3.83 -0.02 0.67 16 14 N -0.67 -9.77 5.58 -115.06 -0.64 -10.41 16 15 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 16 C 0.44 10.16 7.82 -10.98 -0.09 10.07 16 17 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 18 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 23 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 O 0.12 1.00 11.03 15.50 0.17 1.17 16 28 N -0.39 -3.61 11.50 30.47 0.35 -3.26 16 29 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.19 1.24 8.06 -52.48 -0.42 0.81 16 33 H 0.41 2.28 7.48 -40.82 -0.31 1.98 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.34 7.18 -51.93 -0.37 -0.03 16 38 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.30 8.43 -39.29 -0.33 4.97 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -33.17 393.31 -5.35 -38.52 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.32 Total: 10.92 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -0.13 Total: 8.36 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.05 Total: -56.90 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.15 Total: -22.71 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.17 -5.35 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267980095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.816 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds