Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35733 * 117.00131 * 2 1 4 4 C 1.41852 * 126.79015 * 179.71189 * 3 2 1 5 5 C 1.36658 * 103.81624 * 180.26165 * 4 3 2 6 6 C 1.47539 * 126.88470 * 180.02562 * 5 4 3 7 7 O 1.21583 * 119.99368 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00407 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00243 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47008 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.47713 * 54.99517 * 10 9 8 12 12 C 1.53001 * 109.47025 * 294.99398 * 10 9 8 13 13 C 1.53000 * 109.47041 * 175.00095 * 10 9 8 14 14 N 1.46895 * 109.47366 * 184.99554 * 13 10 9 15 15 C 1.46900 * 111.00363 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.47275 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00115 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99532 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99397 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00666 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99778 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47255 * 60.00239 * 23 21 19 25 25 H 1.48499 * 109.47061 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47317 * 300.00134 * 23 21 19 27 27 O 1.34661 * 106.23870 * 0.02562 * 5 4 3 28 28 N 1.20874 * 111.63599 * 359.97438 * 27 5 4 29 29 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46891 * 299.99601 * 1 2 3 31 31 H 1.08996 * 109.47448 * 59.99677 * 1 2 3 32 32 H 1.08005 * 128.08742 * 0.22625 * 4 3 2 33 33 H 0.97009 * 119.99877 * 359.97438 * 8 6 5 34 34 H 1.08997 * 109.46812 * 299.99821 * 9 8 6 35 35 H 1.08995 * 109.46877 * 59.99591 * 9 8 6 36 36 H 1.08995 * 109.47877 * 300.00659 * 12 10 9 37 37 H 1.09001 * 109.46885 * 60.00358 * 12 10 9 38 38 H 1.09002 * 109.47139 * 180.02562 * 12 10 9 39 39 H 1.09005 * 109.46754 * 304.99833 * 13 10 9 40 40 H 1.09001 * 109.47277 * 64.99449 * 13 10 9 41 41 H 1.00902 * 110.99773 * 56.04297 * 14 13 10 42 42 H 1.09000 * 109.47267 * 300.00749 * 15 14 13 43 43 H 1.09007 * 109.46797 * 60.00319 * 15 14 13 44 44 H 0.96990 * 120.00238 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00158 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4506 0.0057 5 6 3.5390 2.8138 0.0091 6 6 4.7784 3.6142 0.0149 7 8 5.8603 3.0595 0.0167 8 7 4.7113 4.9603 0.0183 9 6 5.9420 5.7551 0.0246 10 6 5.5877 7.2435 0.0280 11 1 4.9274 7.4580 0.8682 12 6 4.8809 7.6025 -1.2807 13 6 6.8672 8.0719 0.1603 14 7 6.5195 9.4937 0.2838 15 6 7.7260 10.3216 0.4137 16 6 7.3303 11.7704 0.5372 17 8 6.1585 12.0827 0.5192 18 7 8.2787 12.7191 0.6686 19 6 7.9187 14.0372 0.7804 20 1 6.8753 14.3154 0.7636 21 6 8.8964 15.0153 0.9153 22 7 10.1660 14.6769 0.9353 23 14 8.4059 16.8112 1.0684 24 1 7.5511 16.9903 2.2695 25 1 9.6257 17.6481 1.1991 26 1 7.6510 17.2232 -0.1423 27 8 2.2758 3.2802 0.0060 28 7 1.4685 2.3805 0.0009 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 4.2442 0.7261 0.0076 33 1 3.8480 5.4029 0.0164 34 1 6.5228 5.5182 0.9160 35 1 6.5290 5.5228 -0.8639 36 1 5.5411 7.3880 -2.1210 37 1 3.9694 7.0123 -1.3750 38 1 4.6290 8.6629 -1.2785 39 1 7.4160 7.7537 1.0468 40 1 7.4881 7.9252 -0.7235 41 1 5.8914 9.6464 1.0586 42 1 8.2804 10.0189 1.3020 43 1 8.3532 10.1905 -0.4682 44 1 9.2158 12.4693 0.6833 45 1 10.8485 15.3597 1.0298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267980095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = -71.374816 kcal Electronic energy + Delta-G solvation = -27735.765755 eV Core-core repulsion = 23370.335014 eV Total energy + Delta-G solvation = -4365.430741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.15996 -40.91691 -40.12653 -39.96869 -38.29652 -36.23788 -35.70284 -34.37947 -33.75255 -33.21744 -32.64937 -28.84899 -28.64630 -27.83425 -26.63816 -25.15267 -24.52410 -23.80969 -21.93035 -21.58573 -20.99914 -20.08514 -19.80148 -19.14036 -17.99861 -17.81348 -17.37181 -17.17462 -16.93149 -16.70082 -16.51486 -16.32816 -16.08366 -15.87258 -15.48243 -15.31135 -15.16281 -14.80648 -14.60628 -14.37351 -13.91158 -13.53457 -13.37813 -13.19504 -13.13630 -12.96948 -12.93516 -12.81705 -12.61193 -12.41269 -12.11696 -11.98618 -11.94887 -11.69043 -11.54070 -11.47647 -11.07384 -10.49946 -10.31030 -10.23903 -9.99163 -9.24087 -8.44580 -5.93231 -0.42110 0.91419 1.38328 1.41397 1.43330 1.53988 1.54859 1.80360 2.08683 2.22078 2.31611 2.92476 2.99918 3.23143 3.56517 3.60198 3.72256 3.91524 3.96838 4.02718 4.10398 4.22709 4.25737 4.36904 4.52515 4.55016 4.56005 4.62414 4.62920 4.68161 4.80068 4.89414 5.00407 5.12653 5.13904 5.39696 5.42741 5.59109 5.79951 5.92243 6.14218 6.18738 6.47768 6.62734 6.80438 6.90957 7.14925 7.59347 8.14615 8.72559 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.001369 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.898132 B =20451.561120 C =21006.289789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.291 6.291 3 C 0.198 3.802 4 C -0.153 4.153 5 C -0.059 4.059 6 C 0.610 3.390 7 O -0.539 6.539 8 N -0.696 5.696 9 C 0.129 3.871 10 C -0.089 4.089 11 H 0.085 0.915 12 C -0.140 4.140 13 C 0.066 3.934 14 N -0.678 5.678 15 C 0.065 3.935 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.574 5.574 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.272 1.272 27 O 0.122 5.878 28 N -0.400 5.400 29 H 0.136 0.864 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.204 0.796 33 H 0.419 0.581 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.344 0.656 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.765 -29.123 -1.670 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.197 6.197 3 C 0.001 3.999 4 C -0.175 4.175 5 C -0.125 4.125 6 C 0.393 3.607 7 O -0.417 6.417 8 N -0.347 5.347 9 C 0.005 3.995 10 C -0.109 4.109 11 H 0.104 0.896 12 C -0.197 4.197 13 C -0.063 4.063 14 N -0.311 5.311 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.097 0.903 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.198 1.198 27 O 0.055 5.945 28 N -0.123 5.123 29 H 0.154 0.846 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.221 0.779 33 H 0.257 0.743 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.789 -28.979 -2.348 32.178 hybrid contribution 0.625 0.543 0.954 1.263 sum -13.164 -28.436 -1.393 31.366 Atomic orbital electron populations 1.23385 0.74801 1.06323 1.02539 1.86230 1.24522 1.19861 1.89112 1.22094 0.91007 0.86085 1.00687 1.22441 0.94682 0.95223 1.05169 1.23925 0.86887 0.93910 1.07768 1.16399 0.84724 0.82278 0.77258 1.90898 1.27530 1.71868 1.51422 1.45822 1.11946 1.04626 1.72329 1.21479 0.85464 0.89120 1.03407 1.21227 0.97383 0.92037 1.00213 0.89630 1.21742 1.00091 1.01850 0.96043 1.21979 0.96633 0.85999 1.01725 1.60031 1.14329 1.05756 1.50947 1.21519 0.93419 0.88996 1.02777 1.20937 0.85768 0.88774 0.82039 1.90487 1.19847 1.83699 1.56893 1.41934 1.08742 1.05993 1.64461 1.19641 0.94247 0.83316 1.49298 0.90303 1.26011 0.94628 1.04171 0.96334 1.69664 1.00113 1.36319 1.50046 0.85010 0.77748 0.76800 0.78913 1.19673 1.19552 1.19774 1.84945 1.11664 1.29504 1.68431 1.73998 1.16065 0.97112 1.25173 0.84616 0.92043 0.92015 0.77871 0.74307 0.90386 0.90373 0.92736 0.91821 0.92942 0.93718 0.90099 0.83708 0.91569 0.87897 0.76992 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.73 113.37 1.22 1.42 16 2 O -0.29 -4.37 10.57 -90.56 -0.96 -5.33 16 3 C 0.20 3.34 8.00 85.78 0.69 4.03 16 4 C -0.15 -2.33 10.97 22.79 0.25 -2.08 16 5 C -0.06 -0.91 7.29 24.36 0.18 -0.73 16 6 C 0.61 10.21 7.82 86.70 0.68 10.89 16 7 O -0.54 -12.37 16.91 -3.98 -0.07 -12.44 16 8 N -0.70 -8.82 5.28 -466.29 -2.46 -11.28 16 9 C 0.13 1.72 5.06 86.38 0.44 2.15 16 10 C -0.09 -1.33 2.57 -10.79 -0.03 -1.36 16 11 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 12 C -0.14 -2.35 8.95 71.98 0.64 -1.70 16 13 C 0.07 1.25 5.07 86.30 0.44 1.68 16 14 N -0.68 -19.08 5.58 -517.93 -2.89 -21.97 16 15 C 0.07 2.11 6.17 85.56 0.53 2.63 16 16 C 0.44 20.29 7.82 87.66 0.69 20.98 16 17 O -0.62 -33.77 15.78 -3.06 -0.05 -33.82 16 18 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 19 C -0.34 -18.93 9.68 84.04 0.81 -18.11 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 23 Si 0.99 42.64 29.55 68.60 2.03 44.66 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 O 0.12 1.93 11.03 65.66 0.72 2.66 16 28 N -0.40 -7.13 11.50 -172.01 -1.98 -9.11 16 29 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.42 3.83 7.48 -92.70 -0.69 3.14 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.82 7.18 -2.39 -0.02 0.81 16 38 H 0.05 1.19 7.75 -2.39 -0.02 1.17 16 39 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.34 10.20 8.43 -89.69 -0.76 9.44 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 44 H 0.40 19.04 7.90 -92.72 -0.73 18.31 16 45 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -71.83 393.31 -1.12 -72.95 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -1.12 Total: 33.82 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 6.99 Total: 19.64 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -8.67 Total: -122.14 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.35 Total: -48.93 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.83 -1.12 -72.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267980095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.576 kcal (2) G-P(sol) polarization free energy of solvation -71.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds