Wall clock time and date at job start Sat Apr 11 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47178 * 2 1 4 4 C 1.50705 * 109.46831 * 239.99671 * 2 1 3 5 5 N 1.31071 * 126.65998 * 284.68818 * 4 2 1 6 6 N 1.28838 * 107.98765 * 179.89641 * 5 4 2 7 7 N 1.28732 * 109.39772 * 0.37821 * 6 5 4 8 8 N 1.29016 * 108.81034 * 359.76075 * 7 6 5 9 9 C 1.46498 * 126.44086 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.46948 * 120.00130 * 2 1 3 11 11 C 1.47481 * 111.00057 * 284.50205 * 10 2 1 12 12 C 1.53504 * 87.93519 * 221.30177 * 11 10 2 13 13 N 1.46501 * 114.17043 * 272.37627 * 12 11 10 14 14 C 1.46501 * 119.99882 * 33.84319 * 13 12 11 15 15 C 1.34775 * 120.00230 * 213.84092 * 13 12 11 16 16 O 1.21285 * 119.99993 * 0.02562 * 15 13 12 17 17 C 1.50699 * 120.00214 * 179.97438 * 15 13 12 18 18 S 1.80996 * 109.47193 * 180.02562 * 17 15 13 19 19 C 1.76203 * 100.00043 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99752 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00309 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99775 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47255 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47002 * 120.00080 * 23 21 19 26 26 H 1.48494 * 109.47396 * 239.99846 * 23 21 19 27 27 C 1.47482 * 110.99868 * 188.53830 * 10 2 1 28 28 H 1.08997 * 109.47477 * 55.59970 * 1 2 3 29 29 H 1.09011 * 109.47082 * 295.59912 * 1 2 3 30 30 H 1.09006 * 109.47548 * 175.60295 * 1 2 3 31 31 H 1.09007 * 109.47599 * 270.03376 * 9 8 7 32 32 H 1.09002 * 109.47198 * 30.03131 * 9 8 7 33 33 H 1.08994 * 109.47557 * 150.03194 * 9 8 7 34 34 H 1.09006 * 113.47714 * 336.07339 * 11 10 2 35 35 H 1.08999 * 113.47598 * 106.52834 * 11 10 2 36 36 H 1.09002 * 114.34591 * 139.68591 * 12 11 10 37 37 H 1.08996 * 109.47186 * 89.99840 * 14 13 12 38 38 H 1.09002 * 109.47309 * 210.00139 * 14 13 12 39 39 H 1.09000 * 109.47050 * 329.99960 * 14 13 12 40 40 H 1.09004 * 109.47411 * 300.00403 * 17 15 13 41 41 H 1.08998 * 109.47040 * 60.00352 * 17 15 13 42 42 H 0.96996 * 120.00090 * 180.02562 * 22 21 19 43 43 H 1.09004 * 113.47417 * 253.47213 * 27 10 2 44 44 H 1.08999 * 113.47469 * 23.87256 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 2.0417 -2.0047 -1.4378 6 7 2.5451 -2.2170 -2.6046 7 7 2.8643 -1.0924 -3.1437 8 7 2.5635 -0.1396 -2.3275 9 6 2.7634 1.2942 -2.5520 10 7 2.0196 -0.6925 1.1994 11 6 1.8707 0.1552 2.3970 12 6 3.2566 -0.3299 2.8446 13 7 3.2351 -1.5697 3.6248 14 6 2.2354 -2.6005 3.3345 15 6 4.1350 -1.7620 4.6095 16 8 4.9624 -0.9085 4.8500 17 6 4.1125 -3.0371 5.4123 18 16 5.4334 -2.9948 6.6490 19 6 5.1820 -4.5597 7.4189 20 1 4.3880 -5.2077 7.0783 21 6 6.0037 -4.9590 8.4639 22 7 6.9711 -4.1690 8.8794 23 14 5.7366 -6.6176 9.2806 24 1 4.5936 -7.3100 8.6329 25 1 6.9620 -7.4439 9.1353 26 1 5.4424 -6.4179 10.7223 27 6 3.4795 -0.5377 1.3401 28 1 -0.3634 0.5806 -0.8479 29 1 -0.3634 0.4441 0.9269 30 1 -0.3634 -1.0247 -0.0788 31 1 3.7489 1.5851 -2.1881 32 1 2.6922 1.5083 -3.6184 33 1 1.9981 1.8560 -2.0168 34 1 1.8353 1.2214 2.1727 35 1 1.0646 -0.1641 3.0575 36 1 3.8832 0.4453 3.2858 37 1 2.6309 -3.2908 2.5895 38 1 2.0011 -3.1470 4.2481 39 1 1.3301 -2.1306 2.9500 40 1 3.1493 -3.1342 5.9133 41 1 4.2637 -3.8877 4.7477 42 1 7.5455 -4.4482 9.6093 43 1 4.0370 -1.4444 1.1049 44 1 3.8737 0.3429 0.8329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269754993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:12 Heat of formation + Delta-G solvation = 142.773446 kcal Electronic energy + Delta-G solvation = -27192.290800 eV Core-core repulsion = 23311.191847 eV Total energy + Delta-G solvation = -3881.098953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.53729 -41.19280 -38.78824 -36.17237 -35.42756 -33.83833 -32.40898 -31.52595 -29.39477 -28.92889 -27.49142 -26.86055 -25.77705 -25.43534 -24.65770 -23.47340 -21.52756 -20.89449 -18.65731 -18.05083 -17.76340 -17.63739 -17.03220 -16.65916 -16.17052 -15.62555 -15.45389 -14.89932 -14.78359 -14.37660 -14.28369 -14.09064 -13.64161 -13.46083 -13.39771 -13.09043 -12.79095 -12.63724 -12.57605 -12.51499 -12.33831 -12.04241 -12.01145 -11.91961 -11.41521 -11.36744 -11.26460 -11.14920 -11.04888 -10.99583 -10.73102 -10.38521 -9.77811 -9.52990 -9.29238 -9.05377 -8.51351 -8.20703 -6.48317 -6.19994 -3.90275 0.81999 1.51343 1.94677 2.85537 2.98771 3.23446 3.23839 3.28187 3.32916 3.37170 3.61377 3.76558 4.07121 4.19597 4.22263 4.24449 4.29736 4.39667 4.55825 4.64134 4.80857 4.86059 4.97270 5.00332 5.08288 5.15403 5.16263 5.27935 5.34987 5.35517 5.41969 5.55871 5.62736 5.63480 5.68792 5.75560 5.80625 5.94981 6.02048 6.18561 6.40922 6.66179 7.54989 7.62450 8.29919 8.37758 8.53479 9.25742 10.87530 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.002171 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.658113 B =12895.952703 C =13204.970485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.132 3.868 3 H 0.072 0.928 4 C 0.188 3.812 5 N -0.271 5.271 6 N -0.076 5.076 7 N -0.097 5.097 8 N -0.311 5.311 9 C 0.076 3.924 10 N -0.444 5.444 11 C -0.012 4.012 12 C 0.129 3.871 13 N -0.599 5.599 14 C 0.085 3.915 15 C 0.537 3.463 16 O -0.518 6.518 17 C -0.148 4.148 18 S -0.064 6.064 19 C -0.532 4.532 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.019 4.019 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.267 0.733 43 H 0.093 0.907 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.117 15.383 -21.696 30.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.020 3.980 3 H 0.090 0.910 4 C -0.091 4.091 5 N -0.120 5.120 6 N -0.070 5.070 7 N -0.082 5.082 8 N -0.113 5.113 9 C -0.066 4.066 10 N -0.168 5.168 11 C -0.141 4.141 12 C 0.023 3.977 13 N -0.334 5.334 14 C -0.058 4.058 15 C 0.325 3.675 16 O -0.392 6.392 17 C -0.298 4.298 18 S 0.163 5.837 19 C -0.681 4.681 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.149 4.149 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.136 0.864 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.798 14.817 -22.057 29.940 hybrid contribution -0.871 -0.323 0.279 0.970 sum -14.668 14.494 -21.778 29.992 Atomic orbital electron populations 1.21793 0.90957 1.04362 1.02735 1.20714 0.97632 0.94074 0.85593 0.91020 1.25842 1.00054 0.90581 0.92614 1.75109 1.16553 1.11258 1.09064 1.78711 1.11444 1.15226 1.01594 1.78904 1.18913 0.92420 1.18009 1.48463 1.40452 1.10351 1.12083 1.22419 1.04973 0.72844 1.06333 1.69254 1.08292 1.39321 0.99914 1.24367 0.99859 0.97047 0.92845 1.21802 0.96574 0.88785 0.90555 1.47451 1.33748 1.17684 1.34519 1.21795 0.92007 0.90788 1.01221 1.20398 0.79675 0.88494 0.78931 1.90684 1.36643 1.44834 1.67076 1.23544 1.06835 0.96930 1.02532 1.85363 1.36820 1.25671 1.35860 1.22899 1.20325 1.03588 1.21262 0.90840 1.24994 0.94487 0.98133 0.96018 1.70027 1.17412 1.36215 1.26708 0.86117 0.78295 0.82126 0.78968 1.19566 1.20584 1.20590 1.24396 0.90423 1.02583 0.97517 0.92039 0.90479 0.90272 0.88309 0.87222 0.87803 0.89851 0.88169 0.86434 0.92552 0.91271 0.90046 0.89094 0.89111 0.92274 0.88906 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.34 37.16 0.35 -0.33 16 2 C 0.13 0.79 1.96 -68.86 -0.13 0.65 16 3 H 0.07 0.22 6.61 -51.93 -0.34 -0.12 16 4 C 0.19 1.67 6.34 -155.44 -0.99 0.69 16 5 N -0.27 -3.48 12.36 32.70 0.40 -3.08 16 6 N -0.08 -1.05 13.43 60.35 0.81 -0.24 16 7 N -0.10 -1.10 13.29 60.35 0.80 -0.30 16 8 N -0.31 -2.38 3.75 -65.03 -0.24 -2.63 16 9 C 0.08 0.14 11.04 59.85 0.66 0.80 16 10 N -0.44 -3.55 4.70 -238.04 -1.12 -4.67 16 11 C -0.01 -0.08 6.03 -7.56 -0.05 -0.13 16 12 C 0.13 1.39 4.67 -67.72 -0.32 1.07 16 13 N -0.60 -8.25 3.11 -173.63 -0.54 -8.79 16 14 C 0.08 0.97 9.33 59.85 0.56 1.53 16 15 C 0.54 10.04 7.69 -10.99 -0.08 9.95 16 16 O -0.52 -11.49 15.37 5.55 0.09 -11.41 16 17 C -0.15 -3.02 4.71 36.00 0.17 -2.85 16 18 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 19 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.02 -0.18 6.77 -7.56 -0.05 -0.23 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.28 7.62 -51.92 -0.40 -0.12 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.07 8.14 -51.92 -0.42 -0.36 16 32 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.10 -0.09 7.41 -51.93 -0.38 -0.47 16 34 H 0.08 0.35 7.68 -51.93 -0.40 -0.04 16 35 H 0.10 0.69 7.25 -51.93 -0.38 0.31 16 36 H 0.12 1.39 7.28 -51.93 -0.38 1.01 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 39 H 0.08 0.78 5.68 -51.93 -0.29 0.49 16 40 H 0.09 1.71 7.40 -51.91 -0.38 1.33 16 41 H 0.09 1.77 8.11 -51.92 -0.42 1.35 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 0.53 7.79 -51.93 -0.40 0.12 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -38.30 377.80 -6.49 -44.79 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -6.20 Total: -4.66 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 0.32 Total: -1.78 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.85 Total: -45.22 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.30 -6.49 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269754993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.566 kcal (2) G-P(sol) polarization free energy of solvation -38.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds