Wall clock time and date at job start Sat Apr 11 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47178 * 2 1 4 4 C 1.50705 * 109.46831 * 239.99671 * 2 1 3 5 5 N 1.31071 * 126.65998 * 284.68818 * 4 2 1 6 6 N 1.28838 * 107.98765 * 179.89641 * 5 4 2 7 7 N 1.28732 * 109.39772 * 0.37821 * 6 5 4 8 8 N 1.29016 * 108.81034 * 359.76075 * 7 6 5 9 9 C 1.46498 * 126.44086 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.46948 * 120.00130 * 2 1 3 11 11 C 1.47481 * 111.00057 * 284.50205 * 10 2 1 12 12 C 1.53504 * 87.93519 * 221.30177 * 11 10 2 13 13 N 1.46501 * 114.17043 * 272.37627 * 12 11 10 14 14 C 1.46501 * 119.99882 * 33.84319 * 13 12 11 15 15 C 1.34775 * 120.00230 * 213.84092 * 13 12 11 16 16 O 1.21285 * 119.99993 * 0.02562 * 15 13 12 17 17 C 1.50699 * 120.00214 * 179.97438 * 15 13 12 18 18 S 1.80996 * 109.47193 * 180.02562 * 17 15 13 19 19 C 1.76203 * 100.00043 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99752 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00309 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99775 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47255 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47002 * 120.00080 * 23 21 19 26 26 H 1.48494 * 109.47396 * 239.99846 * 23 21 19 27 27 C 1.47482 * 110.99868 * 188.53830 * 10 2 1 28 28 H 1.08997 * 109.47477 * 55.59970 * 1 2 3 29 29 H 1.09011 * 109.47082 * 295.59912 * 1 2 3 30 30 H 1.09006 * 109.47548 * 175.60295 * 1 2 3 31 31 H 1.09007 * 109.47599 * 270.03376 * 9 8 7 32 32 H 1.09002 * 109.47198 * 30.03131 * 9 8 7 33 33 H 1.08994 * 109.47557 * 150.03194 * 9 8 7 34 34 H 1.09006 * 113.47714 * 336.07339 * 11 10 2 35 35 H 1.08999 * 113.47598 * 106.52834 * 11 10 2 36 36 H 1.09002 * 114.34591 * 139.68591 * 12 11 10 37 37 H 1.08996 * 109.47186 * 89.99840 * 14 13 12 38 38 H 1.09002 * 109.47309 * 210.00139 * 14 13 12 39 39 H 1.09000 * 109.47050 * 329.99960 * 14 13 12 40 40 H 1.09004 * 109.47411 * 300.00403 * 17 15 13 41 41 H 1.08998 * 109.47040 * 60.00352 * 17 15 13 42 42 H 0.96996 * 120.00090 * 180.02562 * 22 21 19 43 43 H 1.09004 * 113.47417 * 253.47213 * 27 10 2 44 44 H 1.08999 * 113.47469 * 23.87256 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 2.0417 -2.0047 -1.4378 6 7 2.5451 -2.2170 -2.6046 7 7 2.8643 -1.0924 -3.1437 8 7 2.5635 -0.1396 -2.3275 9 6 2.7634 1.2942 -2.5520 10 7 2.0196 -0.6925 1.1994 11 6 1.8707 0.1552 2.3970 12 6 3.2566 -0.3299 2.8446 13 7 3.2351 -1.5697 3.6248 14 6 2.2354 -2.6005 3.3345 15 6 4.1350 -1.7620 4.6095 16 8 4.9624 -0.9085 4.8500 17 6 4.1125 -3.0371 5.4123 18 16 5.4334 -2.9948 6.6490 19 6 5.1820 -4.5597 7.4189 20 1 4.3880 -5.2077 7.0783 21 6 6.0037 -4.9590 8.4639 22 7 6.9711 -4.1690 8.8794 23 14 5.7366 -6.6176 9.2806 24 1 4.5936 -7.3100 8.6329 25 1 6.9620 -7.4439 9.1353 26 1 5.4424 -6.4179 10.7223 27 6 3.4795 -0.5377 1.3401 28 1 -0.3634 0.5806 -0.8479 29 1 -0.3634 0.4441 0.9269 30 1 -0.3634 -1.0247 -0.0788 31 1 3.7489 1.5851 -2.1881 32 1 2.6922 1.5083 -3.6184 33 1 1.9981 1.8560 -2.0168 34 1 1.8353 1.2214 2.1727 35 1 1.0646 -0.1641 3.0575 36 1 3.8832 0.4453 3.2858 37 1 2.6309 -3.2908 2.5895 38 1 2.0011 -3.1470 4.2481 39 1 1.3301 -2.1306 2.9500 40 1 3.1493 -3.1342 5.9133 41 1 4.2637 -3.8877 4.7477 42 1 7.5455 -4.4482 9.6093 43 1 4.0370 -1.4444 1.1049 44 1 3.8737 0.3429 0.8329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269754993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:12 Heat of formation + Delta-G solvation = 112.457575 kcal Electronic energy + Delta-G solvation = -27193.605395 eV Core-core repulsion = 23311.191847 eV Total energy + Delta-G solvation = -3882.413548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.24922 -42.00050 -40.07099 -36.82144 -36.34106 -34.75758 -34.58354 -32.22341 -30.78383 -29.29993 -28.40891 -27.72722 -27.51105 -26.56745 -25.33404 -24.12847 -22.32533 -21.75507 -19.98531 -19.40822 -18.59271 -18.33699 -18.21615 -17.45436 -16.97975 -16.88585 -16.82528 -16.47110 -16.04755 -15.47387 -14.87068 -14.68780 -14.59757 -14.53004 -14.48006 -14.08448 -13.69721 -13.54810 -13.42129 -13.34594 -13.16920 -13.14778 -13.00991 -12.90829 -12.88459 -12.61747 -12.53783 -12.15078 -12.08364 -11.93349 -11.81342 -11.69115 -11.15680 -11.08888 -10.91185 -10.27362 -9.95748 -9.64719 -8.66880 -8.34922 -6.12709 0.16335 1.06794 1.15747 1.25425 1.41295 1.45313 1.53815 1.57634 2.07954 2.27321 2.71388 2.80970 2.99221 3.25860 3.30593 3.47741 3.66142 3.75979 3.78535 3.88866 4.16666 4.21449 4.24210 4.24985 4.28671 4.33046 4.41686 4.50412 4.52935 4.55849 4.68372 4.77295 4.79940 4.82235 4.85782 4.87461 5.04196 5.10259 5.19009 5.33315 5.42340 5.61837 5.86737 6.20189 6.29485 7.06637 7.13285 7.53922 8.74590 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.002171 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.658113 B =12895.952703 C =13204.970485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.133 3.867 3 H 0.116 0.884 4 C 0.193 3.807 5 N -0.312 5.312 6 N -0.120 5.120 7 N -0.112 5.112 8 N -0.298 5.298 9 C 0.057 3.943 10 N -0.461 5.461 11 C 0.011 3.989 12 C 0.106 3.894 13 N -0.586 5.586 14 C 0.085 3.915 15 C 0.535 3.465 16 O -0.562 6.562 17 C -0.124 4.124 18 S -0.149 6.149 19 C -0.544 4.544 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.272 1.272 27 C -0.010 4.010 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.140 0.860 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.271 0.729 43 H 0.055 0.945 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.653 16.918 -22.487 33.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.021 3.979 3 H 0.133 0.867 4 C -0.086 4.086 5 N -0.162 5.162 6 N -0.114 5.114 7 N -0.098 5.098 8 N -0.101 5.101 9 C -0.081 4.081 10 N -0.185 5.185 11 C -0.118 4.118 12 C 0.001 3.999 13 N -0.318 5.318 14 C -0.057 4.057 15 C 0.323 3.677 16 O -0.441 6.441 17 C -0.275 4.275 18 S 0.078 5.922 19 C -0.692 4.692 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.197 1.197 27 C -0.140 4.140 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.379 16.378 -22.902 32.573 hybrid contribution -0.145 -0.651 0.373 0.764 sum -16.524 15.727 -22.529 32.061 Atomic orbital electron populations 1.21798 0.89773 1.03292 1.04595 1.21022 0.98375 0.95321 0.83163 0.86669 1.26315 0.99013 0.89766 0.93522 1.74984 1.17933 1.13996 1.09269 1.78666 1.13403 1.16715 1.02589 1.78780 1.19226 0.92832 1.18971 1.48840 1.38600 1.11675 1.10990 1.23051 1.07264 0.69738 1.08076 1.69208 1.07041 1.40892 1.01367 1.24349 0.96787 0.99021 0.91622 1.22110 0.99951 0.87137 0.90740 1.47374 1.32301 1.19187 1.32921 1.21927 0.92182 0.90417 1.01173 1.20076 0.80306 0.87361 0.79963 1.90664 1.38723 1.45880 1.68804 1.23368 1.04514 0.98676 1.00907 1.85487 1.41194 1.26505 1.38994 1.23215 1.20683 1.03691 1.21643 0.90106 1.26118 0.93925 1.02513 0.96578 1.70182 1.18534 1.38554 1.27449 0.84913 0.78643 0.76555 0.77888 1.18151 1.20002 1.19695 1.24283 0.91393 1.02015 0.96313 0.90202 0.88527 0.92903 0.86666 0.86083 0.84141 0.85817 0.87538 0.87729 0.93251 0.91093 0.87465 0.87246 0.88249 0.91972 0.92597 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.34 71.98 0.67 -0.08 16 2 C 0.13 1.04 1.96 44.17 0.09 1.12 16 3 H 0.12 -0.05 6.61 -2.39 -0.02 -0.06 16 4 C 0.19 3.03 6.34 138.14 0.88 3.91 16 5 N -0.31 -8.02 12.36 -50.45 -0.62 -8.64 16 6 N -0.12 -3.40 13.43 37.01 0.50 -2.90 16 7 N -0.11 -2.48 13.29 37.02 0.49 -1.99 16 8 N -0.30 -3.91 3.75 -359.64 -1.35 -5.26 16 9 C 0.06 -0.01 11.04 127.77 1.41 1.40 16 10 N -0.46 -5.95 4.70 -907.03 -4.26 -10.21 16 11 C 0.01 0.10 6.03 83.56 0.50 0.61 16 12 C 0.11 2.08 4.67 45.44 0.21 2.30 16 13 N -0.59 -15.65 3.11 -821.62 -2.56 -18.21 16 14 C 0.08 1.83 9.33 127.77 1.19 3.02 16 15 C 0.54 20.28 7.69 87.66 0.67 20.96 16 16 O -0.56 -25.79 15.37 -3.04 -0.05 -25.84 16 17 C -0.12 -5.11 4.71 71.24 0.34 -4.77 16 18 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16 19 C -0.54 -31.59 9.50 67.95 0.65 -30.95 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -56.35 13.22 21.65 0.29 -56.06 16 23 Si 1.00 44.25 29.55 68.60 2.03 46.28 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 C -0.01 -0.17 6.77 83.56 0.57 0.40 16 28 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.10 0.19 7.62 -2.38 -0.02 0.17 16 30 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.12 -0.32 8.14 -2.38 -0.02 -0.34 16 32 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.14 -1.04 7.41 -2.39 -0.02 -1.06 16 34 H 0.12 0.26 7.68 -2.38 -0.02 0.24 16 35 H 0.11 0.97 7.25 -2.39 -0.02 0.96 16 36 H 0.10 2.37 7.28 -2.39 -0.02 2.35 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.51 6.44 -2.39 -0.02 1.50 16 39 H 0.11 1.78 5.68 -2.39 -0.01 1.77 16 40 H 0.11 4.07 7.40 -2.39 -0.02 4.06 16 41 H 0.10 3.90 8.11 -2.40 -0.02 3.88 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.10 1.11 7.79 -2.39 -0.02 1.09 16 Total: -1.00 -90.63 377.80 1.97 -88.67 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.02 Total: 4.59 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 7.64 Total: -0.85 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -7.51 Total: -103.28 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.05 Total: -25.84 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -90.63 1.97 -88.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269754993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.123 kcal (2) G-P(sol) polarization free energy of solvation -90.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds