Wall clock time and date at job start Sat Apr 11 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46906 * 2 1 4 4 C 1.50701 * 109.47229 * 120.00027 * 2 1 3 5 5 N 1.31069 * 126.66185 * 75.01992 * 4 2 1 6 6 N 1.28845 * 107.99094 * 179.97438 * 5 4 2 7 7 N 1.28738 * 109.39480 * 0.02562 * 6 5 4 8 8 N 1.29011 * 108.81188 * 359.74251 * 7 6 5 9 9 C 1.46504 * 126.44065 * 180.24661 * 8 7 6 10 10 N 1.46904 * 109.47260 * 239.99914 * 2 1 3 11 11 C 1.47958 * 110.99683 * 171.28216 * 10 2 1 12 12 C 1.53942 * 86.29841 * 222.47145 * 11 10 2 13 13 N 1.46501 * 113.72803 * 138.02402 * 12 11 10 14 14 C 1.46495 * 120.00762 * 306.19120 * 13 12 11 15 15 C 1.34788 * 119.99517 * 126.19491 * 13 12 11 16 16 O 1.21277 * 120.00047 * 0.02562 * 15 13 12 17 17 C 1.50700 * 119.99631 * 179.97438 * 15 13 12 18 18 S 1.81003 * 109.46757 * 180.02562 * 17 15 13 19 19 C 1.76201 * 99.99935 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99687 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00170 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99915 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47422 * 90.00240 * 23 21 19 25 25 H 1.48505 * 109.47031 * 210.00356 * 23 21 19 26 26 H 1.48507 * 109.47229 * 330.00298 * 23 21 19 27 27 C 1.48186 * 111.07345 * 71.99392 * 10 2 1 28 28 H 1.09002 * 109.47132 * 60.00610 * 1 2 3 29 29 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47180 * 300.00525 * 1 2 3 31 31 H 1.08996 * 109.47448 * 270.17878 * 9 8 7 32 32 H 1.08998 * 109.46820 * 30.18126 * 9 8 7 33 33 H 1.09008 * 109.46978 * 150.17573 * 9 8 7 34 34 H 1.08996 * 113.75641 * 108.10359 * 11 10 2 35 35 H 1.09000 * 113.76440 * 336.84530 * 11 10 2 36 36 H 1.08998 * 113.73600 * 269.30633 * 12 11 10 37 37 H 1.09003 * 109.46680 * 85.47915 * 14 13 12 38 38 H 1.08991 * 109.47660 * 205.48354 * 14 13 12 39 39 H 1.09002 * 109.46879 * 325.49095 * 14 13 12 40 40 H 1.08994 * 109.47284 * 300.00264 * 17 15 13 41 41 H 1.09007 * 109.46909 * 60.00901 * 17 15 13 42 42 H 0.96993 * 120.00293 * 179.97438 * 22 21 19 43 43 H 1.08996 * 113.65842 * 23.13129 * 27 10 2 44 44 H 1.08999 * 113.92154 * 251.82457 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.0370 -2.0042 1.4401 6 7 2.5450 -2.2168 2.6049 7 7 2.8639 -1.0921 3.1440 8 7 2.5681 -0.1398 2.3255 9 6 2.7738 1.2937 2.5474 10 7 2.0197 -0.6925 -1.1994 11 6 3.4838 -0.5335 -1.3428 12 6 3.2115 -0.3014 -2.8401 13 7 4.0036 0.7850 -3.4218 14 6 3.9828 2.1158 -2.8097 15 6 4.7516 0.5602 -4.5203 16 8 4.7684 -0.5414 -5.0274 17 6 5.5660 1.6779 -5.1191 18 16 6.4524 1.0660 -6.5737 19 6 7.2971 2.5348 -7.0575 20 1 7.1702 3.4433 -6.4874 21 6 8.1264 2.5240 -8.1704 22 7 8.2814 1.4166 -8.8648 23 14 9.0212 4.0812 -8.6836 24 1 10.3426 4.1383 -8.0084 25 1 9.2173 4.0772 -10.1556 26 1 8.2151 5.2663 -8.2949 27 6 1.7944 0.1239 -2.4154 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8902 1.7180 3.0243 32 1 3.6405 1.4409 3.1918 33 1 2.9437 1.7887 1.5912 34 1 4.0467 -1.4434 -1.1348 35 1 3.8831 0.3405 -0.8284 36 1 3.2356 -1.2131 -3.4369 37 1 4.7198 2.1584 -2.0077 38 1 4.2221 2.8661 -3.5632 39 1 2.9911 2.3130 -2.4026 40 1 4.9042 2.4924 -5.4133 41 1 6.2828 2.0402 -4.3821 42 1 8.8606 1.4090 -9.6428 43 1 1.6977 1.1908 -2.2142 44 1 1.0076 -0.2591 -3.0653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269754994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:15 Heat of formation + Delta-G solvation = 137.997636 kcal Electronic energy + Delta-G solvation = -27068.922505 eV Core-core repulsion = 23187.616457 eV Total energy + Delta-G solvation = -3881.306048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.54713 -41.01922 -38.88780 -36.17288 -35.51253 -34.01499 -32.47555 -31.53713 -29.54186 -28.93257 -27.54576 -26.96101 -26.05556 -25.50489 -24.66264 -23.47959 -21.65972 -20.38988 -19.21947 -18.03142 -17.77700 -17.69500 -17.22580 -16.69157 -16.23798 -15.83400 -15.30438 -14.85231 -14.71166 -14.50665 -14.30703 -14.16685 -13.75234 -13.65329 -13.41479 -13.18122 -13.01280 -12.69464 -12.62089 -12.58557 -12.43250 -12.39729 -12.10257 -12.01219 -11.45290 -11.36036 -11.27419 -11.18330 -11.10482 -11.06990 -10.80422 -10.39953 -9.86458 -9.58824 -9.31117 -9.11182 -8.70305 -8.28352 -6.55694 -6.26023 -3.97334 0.80862 1.50000 1.92886 2.69653 2.88966 3.16139 3.18548 3.25233 3.27473 3.35363 3.54226 3.75397 4.01671 4.15116 4.18959 4.23923 4.27780 4.38902 4.56081 4.62784 4.67249 4.79438 4.84894 4.95080 4.98264 5.08986 5.10122 5.15105 5.19558 5.34285 5.34891 5.42497 5.47218 5.53051 5.59708 5.63345 5.77245 5.79938 5.84952 6.03227 6.35536 6.49561 7.36170 7.54600 8.28527 8.30178 8.42157 9.19091 10.81381 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.002089 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.867981 B =13402.001308 C =13662.427088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.138 3.862 3 H 0.070 0.930 4 C 0.188 3.812 5 N -0.271 5.271 6 N -0.076 5.076 7 N -0.096 5.096 8 N -0.310 5.310 9 C 0.076 3.924 10 N -0.452 5.452 11 C -0.013 4.013 12 C 0.128 3.872 13 N -0.617 5.617 14 C 0.075 3.925 15 C 0.535 3.465 16 O -0.508 6.508 17 C -0.150 4.150 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.866 5.866 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.009 4.009 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.080 0.920 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.152 5.924 22.236 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.088 0.912 4 C -0.091 4.091 5 N -0.120 5.120 6 N -0.070 5.070 7 N -0.082 5.082 8 N -0.113 5.113 9 C -0.065 4.065 10 N -0.176 5.176 11 C -0.142 4.142 12 C 0.023 3.977 13 N -0.353 5.353 14 C -0.069 4.069 15 C 0.323 3.677 16 O -0.382 6.382 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.501 5.501 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.138 4.138 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.053 2.382 22.168 27.473 hybrid contribution 0.853 4.203 0.169 4.293 sum -15.200 6.586 22.337 27.809 Atomic orbital electron populations 1.21806 0.90868 1.04604 1.02652 1.20637 0.97623 0.93843 0.85388 0.91237 1.25828 0.99972 0.90595 0.92684 1.75112 1.16489 1.11279 1.09138 1.78707 1.11456 1.15223 1.01649 1.78904 1.19072 0.92404 1.17812 1.48465 1.40380 1.10403 1.12031 1.22425 1.05806 0.72825 1.05470 1.68715 1.07537 1.41565 0.99788 1.24510 0.90316 1.02368 0.97037 1.22849 0.89025 0.92795 0.93066 1.47866 1.47485 1.10608 1.29323 1.21801 1.01406 0.84341 0.99325 1.20425 0.78592 0.89815 0.78846 1.90712 1.62812 1.24882 1.59746 1.23567 1.01800 0.99765 1.04951 1.85459 1.55206 1.17068 1.25639 1.22838 1.32406 0.97013 1.16163 0.90964 1.24996 0.96023 0.97250 0.95318 1.70009 1.36288 1.26391 1.17459 0.86169 0.79657 0.81781 0.77884 1.20267 1.20713 1.19714 1.24602 0.99474 0.97427 0.92290 0.90506 0.90106 0.91938 0.88221 0.87169 0.87940 0.88408 0.91238 0.84716 0.92875 0.89840 0.91690 0.89159 0.89271 0.92119 0.90232 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.26 37.16 0.34 -0.39 16 2 C 0.14 0.87 2.04 -68.86 -0.14 0.73 16 3 H 0.07 0.24 6.40 -51.93 -0.33 -0.09 16 4 C 0.19 1.70 6.35 -155.43 -0.99 0.71 16 5 N -0.27 -3.49 12.36 32.70 0.40 -3.09 16 6 N -0.08 -1.04 13.43 60.35 0.81 -0.23 16 7 N -0.10 -1.08 13.29 60.35 0.80 -0.28 16 8 N -0.31 -2.39 3.75 -65.02 -0.24 -2.64 16 9 C 0.08 0.15 11.21 59.85 0.67 0.82 16 10 N -0.45 -3.86 5.97 -230.88 -1.38 -5.24 16 11 C -0.01 -0.12 6.99 -2.76 -0.02 -0.14 16 12 C 0.13 1.39 4.42 -69.32 -0.31 1.09 16 13 N -0.62 -7.56 3.10 -175.00 -0.54 -8.10 16 14 C 0.07 0.60 9.39 59.84 0.56 1.16 16 15 C 0.54 9.47 7.69 -10.98 -0.08 9.39 16 16 O -0.51 -11.12 15.32 5.56 0.09 -11.04 16 17 C -0.15 -2.87 4.64 36.01 0.17 -2.70 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 20 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.74 13.22 55.49 0.73 -25.01 16 23 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 C -0.01 -0.07 6.71 -2.65 -0.02 -0.08 16 28 H 0.08 0.30 7.60 -51.93 -0.39 -0.10 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.10 -0.02 7.01 -51.92 -0.36 -0.38 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.54 7.04 -51.93 -0.37 0.18 16 36 H 0.14 1.83 7.19 -51.93 -0.37 1.46 16 37 H 0.05 0.37 8.00 -51.93 -0.42 -0.05 16 38 H 0.08 0.71 6.28 -51.93 -0.33 0.38 16 39 H 0.06 0.33 5.84 -51.93 -0.30 0.03 16 40 H 0.09 1.56 7.42 -51.92 -0.38 1.18 16 41 H 0.09 1.57 8.11 -51.91 -0.42 1.15 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.08 0.42 5.57 -51.93 -0.29 0.13 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -37.86 376.99 -6.55 -44.40 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -6.05 Total: -4.55 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 0.39 Total: -2.00 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.59 Total: -44.58 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.86 -6.55 -44.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269754994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.402 kcal (2) G-P(sol) polarization free energy of solvation -37.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds