Wall clock time and date at job start Sat Apr 11 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46906 * 2 1 4 4 C 1.50701 * 109.47229 * 120.00027 * 2 1 3 5 5 N 1.31069 * 126.66185 * 75.01992 * 4 2 1 6 6 N 1.28845 * 107.99094 * 179.97438 * 5 4 2 7 7 N 1.28738 * 109.39480 * 0.02562 * 6 5 4 8 8 N 1.29011 * 108.81188 * 359.74251 * 7 6 5 9 9 C 1.46504 * 126.44065 * 180.24661 * 8 7 6 10 10 N 1.46904 * 109.47260 * 239.99914 * 2 1 3 11 11 C 1.47958 * 110.99683 * 171.28216 * 10 2 1 12 12 C 1.53942 * 86.29841 * 222.47145 * 11 10 2 13 13 N 1.46501 * 113.72803 * 138.02402 * 12 11 10 14 14 C 1.46495 * 120.00762 * 306.19120 * 13 12 11 15 15 C 1.34788 * 119.99517 * 126.19491 * 13 12 11 16 16 O 1.21277 * 120.00047 * 0.02562 * 15 13 12 17 17 C 1.50700 * 119.99631 * 179.97438 * 15 13 12 18 18 S 1.81003 * 109.46757 * 180.02562 * 17 15 13 19 19 C 1.76201 * 99.99935 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99687 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00170 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99915 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47422 * 90.00240 * 23 21 19 25 25 H 1.48505 * 109.47031 * 210.00356 * 23 21 19 26 26 H 1.48507 * 109.47229 * 330.00298 * 23 21 19 27 27 C 1.48186 * 111.07345 * 71.99392 * 10 2 1 28 28 H 1.09002 * 109.47132 * 60.00610 * 1 2 3 29 29 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47180 * 300.00525 * 1 2 3 31 31 H 1.08996 * 109.47448 * 270.17878 * 9 8 7 32 32 H 1.08998 * 109.46820 * 30.18126 * 9 8 7 33 33 H 1.09008 * 109.46978 * 150.17573 * 9 8 7 34 34 H 1.08996 * 113.75641 * 108.10359 * 11 10 2 35 35 H 1.09000 * 113.76440 * 336.84530 * 11 10 2 36 36 H 1.08998 * 113.73600 * 269.30633 * 12 11 10 37 37 H 1.09003 * 109.46680 * 85.47915 * 14 13 12 38 38 H 1.08991 * 109.47660 * 205.48354 * 14 13 12 39 39 H 1.09002 * 109.46879 * 325.49095 * 14 13 12 40 40 H 1.08994 * 109.47284 * 300.00264 * 17 15 13 41 41 H 1.09007 * 109.46909 * 60.00901 * 17 15 13 42 42 H 0.96993 * 120.00293 * 179.97438 * 22 21 19 43 43 H 1.08996 * 113.65842 * 23.13129 * 27 10 2 44 44 H 1.08999 * 113.92154 * 251.82457 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.0370 -2.0042 1.4401 6 7 2.5450 -2.2168 2.6049 7 7 2.8639 -1.0921 3.1440 8 7 2.5681 -0.1398 2.3255 9 6 2.7738 1.2937 2.5474 10 7 2.0197 -0.6925 -1.1994 11 6 3.4838 -0.5335 -1.3428 12 6 3.2115 -0.3014 -2.8401 13 7 4.0036 0.7850 -3.4218 14 6 3.9828 2.1158 -2.8097 15 6 4.7516 0.5602 -4.5203 16 8 4.7684 -0.5414 -5.0274 17 6 5.5660 1.6779 -5.1191 18 16 6.4524 1.0660 -6.5737 19 6 7.2971 2.5348 -7.0575 20 1 7.1702 3.4433 -6.4874 21 6 8.1264 2.5240 -8.1704 22 7 8.2814 1.4166 -8.8648 23 14 9.0212 4.0812 -8.6836 24 1 10.3426 4.1383 -8.0084 25 1 9.2173 4.0772 -10.1556 26 1 8.2151 5.2663 -8.2949 27 6 1.7944 0.1239 -2.4154 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8902 1.7180 3.0243 32 1 3.6405 1.4409 3.1918 33 1 2.9437 1.7887 1.5912 34 1 4.0467 -1.4434 -1.1348 35 1 3.8831 0.3405 -0.8284 36 1 3.2356 -1.2131 -3.4369 37 1 4.7198 2.1584 -2.0077 38 1 4.2221 2.8661 -3.5632 39 1 2.9911 2.3130 -2.4026 40 1 4.9042 2.4924 -5.4133 41 1 6.2828 2.0402 -4.3821 42 1 8.8606 1.4090 -9.6428 43 1 1.6977 1.1908 -2.2142 44 1 1.0076 -0.2591 -3.0653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269754994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:14 Heat of formation + Delta-G solvation = 106.850434 kcal Electronic energy + Delta-G solvation = -27070.273149 eV Core-core repulsion = 23187.616457 eV Total energy + Delta-G solvation = -3882.656692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.25766 -41.84098 -40.06518 -36.82027 -36.40527 -34.82587 -34.57380 -32.22891 -30.84818 -29.29878 -28.31078 -27.74000 -27.56681 -26.76660 -25.35621 -24.13611 -22.43795 -21.24920 -20.19677 -19.59910 -18.62416 -18.34054 -18.25796 -17.64016 -16.98182 -16.87234 -16.75801 -16.37681 -16.04516 -15.24459 -15.12443 -14.76687 -14.59100 -14.53582 -14.26992 -14.11007 -13.88973 -13.81564 -13.48359 -13.17921 -13.17413 -13.13527 -13.07233 -12.95457 -12.88332 -12.67027 -12.56247 -12.22158 -12.12052 -11.95287 -11.81903 -11.69444 -11.13369 -11.10431 -10.90255 -10.24347 -9.95429 -9.68615 -8.66671 -8.33475 -6.11961 0.15327 1.04886 1.13936 1.26428 1.43487 1.46913 1.55046 1.56847 2.02560 2.28387 2.66581 2.79369 3.00893 3.25615 3.29337 3.48750 3.61219 3.69407 3.77870 3.85245 4.06041 4.11793 4.19717 4.24792 4.27486 4.28070 4.37776 4.49123 4.54221 4.55541 4.63068 4.75893 4.77534 4.78587 4.81469 4.94467 4.98574 5.04190 5.17936 5.31189 5.42730 5.52503 5.84321 6.20575 6.25556 7.07764 7.13942 7.52947 8.75722 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.002089 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.867981 B =13402.001308 C =13662.427088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.138 3.862 3 H 0.117 0.883 4 C 0.192 3.808 5 N -0.315 5.315 6 N -0.119 5.119 7 N -0.110 5.110 8 N -0.296 5.296 9 C 0.057 3.943 10 N -0.474 5.474 11 C -0.002 4.002 12 C 0.112 3.888 13 N -0.599 5.599 14 C 0.060 3.940 15 C 0.531 3.469 16 O -0.566 6.566 17 C -0.121 4.121 18 S -0.161 6.161 19 C -0.542 4.542 20 H 0.086 0.914 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 0.999 3.001 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.255 1.255 27 C 0.013 3.987 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.270 0.730 43 H 0.118 0.882 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.407 10.770 24.107 31.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.026 3.974 3 H 0.134 0.866 4 C -0.087 4.087 5 N -0.164 5.164 6 N -0.113 5.113 7 N -0.096 5.096 8 N -0.099 5.099 9 C -0.081 4.081 10 N -0.198 5.198 11 C -0.131 4.131 12 C 0.007 3.993 13 N -0.333 5.333 14 C -0.081 4.081 15 C 0.319 3.681 16 O -0.445 6.445 17 C -0.272 4.272 18 S 0.066 5.934 19 C -0.689 4.689 20 H 0.104 0.896 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.178 1.178 27 C -0.115 4.115 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.079 0.921 43 H 0.136 0.864 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.345 7.278 24.110 30.579 hybrid contribution 1.142 2.746 -0.257 2.985 sum -16.202 10.024 23.852 30.528 Atomic orbital electron populations 1.21821 0.89851 1.03444 1.04551 1.20952 0.98298 0.95199 0.82937 0.86570 1.26255 0.99087 0.89775 0.93595 1.74996 1.17896 1.14081 1.09438 1.78667 1.13370 1.16700 1.02556 1.78779 1.19321 0.92802 1.18691 1.48844 1.38489 1.11750 1.10834 1.23074 1.07521 0.69623 1.07930 1.68673 1.06675 1.43228 1.01253 1.24384 0.91064 1.02011 0.95682 1.22901 0.91716 0.91455 0.93190 1.47804 1.45456 1.12743 1.27296 1.22238 1.04754 0.81365 0.99746 1.20259 0.79155 0.88495 0.80223 1.90698 1.65021 1.26719 1.62014 1.23372 1.01820 1.00449 1.01516 1.85709 1.57228 1.19611 1.30840 1.23181 1.32240 0.97091 1.16424 0.89633 1.26154 0.96921 1.01006 0.95278 1.70191 1.37423 1.29156 1.18160 0.84947 0.78346 0.77329 0.77315 1.19442 1.20555 1.17824 1.24569 0.96434 0.99318 0.91181 0.88476 0.92907 0.90092 0.85644 0.86386 0.84671 0.91616 0.88425 0.88770 0.90813 0.89948 0.87414 0.86842 0.87349 0.92078 0.86393 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.26 71.98 0.67 -0.24 16 2 C 0.14 1.18 2.04 44.17 0.09 1.27 16 3 H 0.12 -0.06 6.40 -2.39 -0.02 -0.07 16 4 C 0.19 3.06 6.35 138.13 0.88 3.94 16 5 N -0.31 -8.17 12.36 -50.45 -0.62 -8.79 16 6 N -0.12 -3.34 13.43 37.01 0.50 -2.84 16 7 N -0.11 -2.38 13.29 37.02 0.49 -1.89 16 8 N -0.30 -3.78 3.75 -359.63 -1.35 -5.13 16 9 C 0.06 -0.04 11.21 127.77 1.43 1.39 16 10 N -0.47 -6.92 5.97 -884.37 -5.28 -12.20 16 11 C 0.00 -0.03 6.99 86.41 0.60 0.58 16 12 C 0.11 2.31 4.42 46.45 0.21 2.51 16 13 N -0.60 -13.28 3.10 -825.97 -2.56 -15.83 16 14 C 0.06 0.64 9.39 127.77 1.20 1.84 16 15 C 0.53 18.70 7.69 87.66 0.67 19.37 16 16 O -0.57 -26.08 15.32 -3.02 -0.05 -26.12 16 17 C -0.12 -4.48 4.64 71.24 0.33 -4.15 16 18 S -0.16 -8.78 20.57 -56.49 -1.16 -9.95 16 19 C -0.54 -30.04 9.50 67.95 0.65 -29.39 16 20 H 0.09 4.33 7.80 -2.91 -0.02 4.31 16 21 C 0.01 0.61 5.49 84.86 0.47 1.08 16 22 N -0.91 -55.66 13.22 21.65 0.29 -55.38 16 23 Si 1.00 42.47 29.55 68.60 2.03 44.50 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 27 C 0.01 0.15 6.71 86.36 0.58 0.73 16 28 H 0.10 0.26 7.60 -2.39 -0.02 0.25 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.13 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.14 -0.97 7.01 -2.38 -0.02 -0.99 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.07 7.04 -2.39 -0.02 1.05 16 36 H 0.09 2.74 7.19 -2.39 -0.02 2.73 16 37 H 0.07 0.58 8.00 -2.39 -0.02 0.56 16 38 H 0.08 0.98 6.28 -2.39 -0.02 0.96 16 39 H 0.11 0.27 5.84 -2.39 -0.01 0.25 16 40 H 0.11 3.67 7.42 -2.40 -0.02 3.66 16 41 H 0.11 3.59 8.11 -2.39 -0.02 3.57 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.12 0.40 5.57 -2.39 -0.01 0.39 16 44 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -92.42 376.99 1.08 -91.33 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.03 Total: 3.38 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 7.77 Total: -1.08 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -8.53 Total: -102.07 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.95 kcal Total: -92.42 1.08 -91.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269754994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.185 kcal (2) G-P(sol) polarization free energy of solvation -92.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds