Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.52303 * 2 1 4 4 C 1.53069 * 109.38922 * 120.17294 * 2 1 3 5 5 C 1.53040 * 109.66463 * 58.71761 * 4 2 1 6 6 C 1.53195 * 109.31043 * 61.29678 * 5 4 2 7 7 N 1.46926 * 108.77835 * 305.36979 * 6 5 4 8 8 C 1.34772 * 120.63027 * 233.62753 * 7 6 5 9 9 O 1.21284 * 119.99832 * 185.35721 * 8 7 6 10 10 C 1.50701 * 120.00179 * 5.35881 * 8 7 6 11 11 N 1.46500 * 109.47134 * 179.97438 * 10 8 7 12 12 C 1.35044 * 126.03605 * 125.00696 * 11 10 8 13 13 C 1.35366 * 107.72883 * 180.02562 * 12 11 10 14 14 Cl 1.73607 * 126.04745 * 180.02562 * 13 12 11 15 15 C 1.39928 * 107.90923 * 359.97438 * 13 12 11 16 16 N 1.30848 * 108.21192 * 359.72142 * 15 13 12 17 17 C 1.46919 * 118.73785 * 53.60746 * 7 6 5 18 18 H 1.09002 * 109.59249 * 66.32378 * 17 7 6 19 19 C 1.52998 * 109.58708 * 186.60436 * 17 7 6 20 20 N 1.46504 * 109.47416 * 178.00078 * 19 17 7 21 21 C 1.36935 * 120.00175 * 185.33623 * 20 19 17 22 22 H 1.07997 * 119.99894 * 359.71629 * 21 20 19 23 23 C 1.38809 * 120.00115 * 179.72619 * 21 20 19 24 24 N 1.31618 * 120.00177 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00042 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47626 * 59.99520 * 25 23 21 27 27 H 1.48511 * 109.47021 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47361 * 299.99310 * 25 23 21 29 29 H 1.08999 * 109.47435 * 180.08383 * 1 2 3 30 30 H 1.09003 * 109.47271 * 300.08016 * 1 2 3 31 31 H 1.08999 * 109.47513 * 60.07532 * 1 2 3 32 32 H 1.09007 * 109.45350 * 298.62732 * 4 2 1 33 33 H 1.09001 * 109.33789 * 178.73729 * 4 2 1 34 34 H 1.09002 * 109.49819 * 301.35125 * 5 4 2 35 35 H 1.09001 * 109.50108 * 181.24961 * 5 4 2 36 36 H 1.09004 * 109.58817 * 185.57801 * 6 5 4 37 37 H 1.09005 * 109.58331 * 65.15775 * 6 5 4 38 38 H 1.09002 * 109.47095 * 300.00101 * 10 8 7 39 39 H 1.09008 * 109.46818 * 59.99859 * 10 8 7 40 40 H 1.07999 * 126.13437 * 359.96841 * 12 11 10 41 41 H 1.08003 * 125.89880 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47111 * 58.00335 * 19 17 7 43 43 H 1.09001 * 109.47514 * 297.99999 * 19 17 7 44 44 H 0.97002 * 120.00139 * 5.05220 * 20 19 17 45 45 H 0.96999 * 120.00535 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0381 -0.7257 1.2482 5 6 1.5032 -2.1595 1.2640 6 6 2.0169 -2.9054 0.0284 7 7 1.6542 -2.1391 -1.1715 8 6 0.9788 -2.7230 -2.1811 9 8 0.7701 -2.1091 -3.2060 10 6 0.4831 -4.1388 -2.0365 11 7 -0.2149 -4.5392 -3.2607 12 6 0.0632 -5.6242 -4.0151 13 6 -0.8044 -5.6373 -5.0541 14 17 -0.8685 -6.8271 -6.3167 15 6 -1.6412 -4.5227 -4.9299 16 7 -1.2927 -3.8678 -3.8520 17 6 2.0412 -0.7239 -1.2496 18 1 3.1271 -0.6442 -1.2995 19 6 1.4228 -0.0912 -2.4979 20 7 1.7708 1.3310 -2.5481 21 6 1.2371 2.1326 -3.5216 22 1 0.5631 1.7154 -4.2551 23 6 1.5624 3.4813 -3.5657 24 7 2.3834 3.9899 -2.6715 25 14 0.8348 4.5746 -4.8941 26 1 -0.6462 4.5661 -4.7862 27 1 1.3353 5.9622 -4.7222 28 1 1.2367 4.0649 -6.2298 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8906 32 1 1.6942 -0.2000 2.1391 33 1 3.1279 -0.7449 1.2361 34 1 0.4134 -2.1414 1.2509 35 1 1.8484 -2.6668 2.1649 36 1 1.5604 -3.8942 -0.0176 37 1 3.1011 -3.0036 0.0854 38 1 1.3293 -4.8044 -1.8660 39 1 -0.2027 -4.1991 -1.1913 40 1 0.8393 -6.3507 -3.8243 41 1 -2.4405 -4.2526 -5.6042 42 1 0.3387 -0.1988 -2.4607 43 1 1.8072 -0.5909 -3.3871 44 1 2.3761 1.7058 -1.8892 45 1 2.6105 4.9324 -2.7020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271741000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = 51.738066 kcal Electronic energy + Delta-G solvation = -28361.059526 eV Core-core repulsion = 24441.676524 eV Total energy + Delta-G solvation = -3919.383001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39491 -41.58970 -38.83334 -37.33968 -36.69007 -34.90944 -34.10441 -33.67310 -31.77546 -31.06457 -29.37138 -27.82490 -27.27618 -25.54105 -24.75937 -22.86961 -22.41770 -22.11660 -21.07802 -19.55000 -19.13298 -18.43148 -18.08015 -17.22353 -16.61311 -16.46015 -16.12401 -15.79096 -15.66820 -15.44762 -15.17001 -15.03485 -14.83320 -14.75587 -14.47839 -14.19325 -14.08807 -13.56519 -13.36400 -13.26199 -13.06466 -12.79817 -12.71284 -12.60553 -12.44845 -12.32029 -12.15866 -12.01545 -11.94810 -11.79677 -11.42763 -11.34834 -11.23034 -10.98815 -10.73316 -10.10560 -9.56131 -9.39045 -8.94749 -7.98280 -5.25108 0.70359 1.00076 1.40268 1.44045 1.50544 1.57041 1.63153 1.76736 1.99383 2.53507 3.31229 3.34653 3.64010 3.76095 3.84634 3.86785 3.91552 4.04520 4.10430 4.12593 4.16203 4.24470 4.42585 4.51745 4.53442 4.63580 4.64428 4.72246 4.79055 4.87896 4.95157 5.05851 5.15845 5.22353 5.28791 5.34645 5.37069 5.40039 5.43596 5.57141 5.69497 5.83801 6.24855 6.45517 6.55505 7.20944 7.30983 8.06829 8.33663 9.24958 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009485 B = 0.003560 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.358776 B = 7863.280176 C =10332.728877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 H 0.053 0.947 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.098 3.902 7 N -0.598 5.598 8 C 0.482 3.518 9 O -0.551 6.551 10 C 0.119 3.881 11 N -0.359 5.359 12 C 0.086 3.914 13 C -0.202 4.202 14 Cl -0.040 7.040 15 C 0.047 3.953 16 N -0.302 5.302 17 C 0.157 3.843 18 H 0.065 0.935 19 C 0.176 3.824 20 N -0.741 5.741 21 C -0.241 4.241 22 H 0.055 0.945 23 C -0.069 4.069 24 N -0.965 5.965 25 Si 0.970 3.030 26 H -0.281 1.281 27 H -0.285 1.285 28 H -0.282 1.282 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.180 0.820 39 H 0.144 0.856 40 H 0.227 0.773 41 H 0.197 0.803 42 H 0.012 0.988 43 H 0.016 0.984 44 H 0.372 0.628 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 -27.616 9.898 29.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.072 0.928 4 C -0.148 4.148 5 C -0.169 4.169 6 C -0.023 4.023 7 N -0.332 5.332 8 C 0.269 3.731 9 O -0.427 6.427 10 C -0.004 4.004 11 N -0.141 5.141 12 C -0.061 4.061 13 C -0.241 4.241 14 Cl -0.012 7.012 15 C -0.141 4.141 16 N -0.122 5.122 17 C 0.053 3.947 18 H 0.083 0.917 19 C 0.050 3.950 20 N -0.386 5.386 21 C -0.374 4.374 22 H 0.073 0.927 23 C -0.261 4.261 24 N -0.616 5.616 25 Si 0.798 3.202 26 H -0.208 1.208 27 H -0.211 1.211 28 H -0.209 1.209 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.197 0.803 39 H 0.162 0.838 40 H 0.243 0.757 41 H 0.214 0.786 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.205 0.795 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.904 -26.327 9.991 28.224 hybrid contribution -0.093 0.900 -1.609 1.846 sum -1.997 -25.428 8.383 26.848 Atomic orbital electron populations 1.21691 0.95454 1.01259 1.00297 1.21350 0.96232 0.98780 0.94941 0.92845 1.21559 1.00896 0.96643 0.95725 1.21978 1.01533 0.94715 0.98723 1.22257 1.02277 0.95542 0.82224 1.48163 1.55832 1.10052 1.19181 1.21332 0.78483 0.89840 0.83419 1.90925 1.56651 1.64520 1.30608 1.22037 0.99936 0.93860 0.84588 1.48100 1.25366 1.18993 1.21622 1.22852 1.00167 0.92138 0.90966 1.20879 1.06088 0.98800 0.98333 1.98316 1.98298 1.54864 1.49735 1.24219 1.00724 0.92794 0.96327 1.77642 1.03604 1.19578 1.11372 1.21166 0.97801 0.80636 0.95080 0.91712 1.21099 0.96277 0.82686 0.94895 1.42646 1.55875 1.05306 1.34800 1.19387 1.20972 0.90974 1.06028 0.92686 1.25446 1.01181 0.97965 1.01544 1.69779 1.40353 1.12981 1.38490 0.85279 0.77967 0.77948 0.78985 1.20776 1.21058 1.20864 0.91715 0.92323 0.96200 0.91028 0.91148 0.91399 0.87194 0.85768 0.89158 0.80269 0.83826 0.75650 0.78585 0.96982 0.96673 0.79485 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 8.20 71.98 0.59 -3.63 16 2 C -0.09 -2.90 2.54 -10.70 -0.03 -2.92 16 3 H 0.05 2.07 7.07 -2.39 -0.02 2.05 16 4 C -0.11 -2.15 5.42 30.63 0.17 -1.98 16 5 C -0.13 -1.52 5.74 30.67 0.18 -1.34 16 6 C 0.10 1.03 6.35 86.36 0.55 1.58 16 7 N -0.60 -14.00 2.42 -795.02 -1.93 -15.93 16 8 C 0.48 12.99 7.56 87.66 0.66 13.65 16 9 O -0.55 -22.55 11.27 -3.04 -0.03 -22.59 16 10 C 0.12 1.71 5.34 85.63 0.46 2.16 16 11 N -0.36 -7.81 3.40 -351.66 -1.19 -9.00 16 12 C 0.09 1.46 11.43 83.54 0.95 2.41 16 13 C -0.20 -4.30 6.65 22.02 0.15 -4.16 16 14 Cl -0.04 -0.75 29.30 -2.72 -0.08 -0.83 16 15 C 0.05 1.20 12.02 85.25 1.02 2.23 16 16 N -0.30 -9.17 11.66 -56.98 -0.66 -9.83 16 17 C 0.16 5.32 2.77 44.98 0.12 5.45 16 18 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 19 C 0.18 8.40 3.59 86.38 0.31 8.71 16 20 N -0.74 -41.77 5.27 -343.45 -1.81 -43.58 16 21 C -0.24 -15.11 9.99 84.03 0.84 -14.27 16 22 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 23 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 24 N -0.97 -61.46 13.06 21.65 0.28 -61.18 16 25 Si 0.97 49.79 29.55 68.60 2.03 51.82 16 26 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 29 H 0.06 1.81 5.97 -2.39 -0.01 1.79 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.02 0.82 6.39 -2.39 -0.02 0.81 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 0.89 6.34 -2.39 -0.02 0.87 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.12 0.21 5.93 -2.39 -0.01 0.19 16 37 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.18 0.49 7.65 -2.39 -0.02 0.47 16 39 H 0.14 1.28 7.91 -2.38 -0.02 1.26 16 40 H 0.23 1.52 8.06 -2.91 -0.02 1.49 16 41 H 0.20 4.29 8.06 -2.91 -0.02 4.27 16 42 H 0.01 0.64 5.52 -2.39 -0.01 0.63 16 43 H 0.02 0.84 6.26 -2.39 -0.01 0.82 16 44 H 0.37 21.40 6.65 -92.71 -0.62 20.78 16 45 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -89.46 367.15 3.45 -86.01 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.41 Total: 21.01 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.44 Total: 4.10 kcal Atomic # 7 Polarization: -134.21 SS G_CDS: -5.31 Total: -139.52 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.03 Total: -22.59 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.03 Total: 51.82 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -89.46 3.45 -86.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271741000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.746 kcal (2) G-P(sol) polarization free energy of solvation -89.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds