Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49592 * 2 1 4 4 C 1.53035 * 109.52506 * 120.08360 * 2 1 3 5 5 C 1.53042 * 109.53410 * 181.33251 * 4 2 1 6 6 C 1.53628 * 109.24329 * 298.50731 * 5 4 2 7 7 N 1.46921 * 108.54025 * 54.85910 * 6 5 4 8 8 C 1.34778 * 120.63197 * 126.36835 * 7 6 5 9 9 O 1.21280 * 120.00067 * 174.62563 * 8 7 6 10 10 C 1.50700 * 119.99469 * 354.62971 * 8 7 6 11 11 N 1.46508 * 109.46740 * 179.97438 * 10 8 7 12 12 C 1.35048 * 126.03436 * 125.00142 * 11 10 8 13 13 C 1.35376 * 107.72578 * 179.97438 * 12 11 10 14 14 Cl 1.73596 * 126.04626 * 180.02562 * 13 12 11 15 15 C 1.39929 * 107.90645 * 0.02562 * 13 12 11 16 16 N 1.30852 * 108.21380 * 359.71786 * 15 13 12 17 17 C 1.46927 * 118.73974 * 306.09383 * 7 6 5 18 18 H 1.08997 * 109.58766 * 294.07202 * 17 7 6 19 19 C 1.53001 * 109.58773 * 173.78863 * 17 7 6 20 20 N 1.46498 * 109.47017 * 73.01120 * 19 17 7 21 21 C 1.36942 * 120.00303 * 174.78122 * 20 19 17 22 22 H 1.07998 * 119.99543 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00165 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00017 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00074 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47364 * 89.99620 * 25 23 21 27 27 H 1.48500 * 109.47238 * 209.99933 * 25 23 21 28 28 H 1.48501 * 109.46875 * 329.99961 * 25 23 21 29 29 H 1.08996 * 109.47626 * 180.02562 * 1 2 3 30 30 H 1.09012 * 109.46770 * 300.06480 * 1 2 3 31 31 H 1.08994 * 109.47591 * 60.06053 * 1 2 3 32 32 H 1.08994 * 109.46099 * 301.34857 * 4 2 1 33 33 H 1.08995 * 109.46128 * 61.30910 * 4 2 1 34 34 H 1.08995 * 109.50240 * 58.58854 * 5 4 2 35 35 H 1.09006 * 109.49609 * 178.65284 * 5 4 2 36 36 H 1.09002 * 109.73784 * 295.12245 * 6 5 4 37 37 H 1.08997 * 109.66163 * 174.55487 * 6 5 4 38 38 H 1.08999 * 109.47452 * 59.99998 * 10 8 7 39 39 H 1.09000 * 109.47316 * 299.99439 * 10 8 7 40 40 H 1.07992 * 126.13624 * 0.02562 * 12 11 10 41 41 H 1.07998 * 125.89367 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47097 * 193.01072 * 19 17 7 43 43 H 1.08999 * 109.47333 * 313.01355 * 19 17 7 44 44 H 0.97006 * 119.99917 * 354.78364 * 20 19 17 45 45 H 0.96999 * 119.99693 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5715 -0.6942 1.2652 6 6 4.1057 -1.4306 0.0273 7 7 3.5046 -0.8281 -1.1703 8 6 4.2806 -0.3849 -2.1793 9 8 3.7715 0.0207 -3.2027 10 6 5.7807 -0.3933 -2.0357 11 7 6.3913 0.1324 -3.2593 12 6 7.2634 1.1608 -3.3335 13 6 7.5888 1.3321 -4.6364 14 17 8.6787 2.5263 -5.2686 15 6 6.8913 0.3762 -5.3833 16 7 6.1779 -0.3466 -4.5582 17 6 2.0412 -0.7234 -1.2499 18 1 1.6056 -1.7214 -1.2983 19 6 1.6508 0.0679 -2.4998 20 7 1.8738 -0.7573 -3.6896 21 6 1.4941 -0.2980 -4.9225 22 1 1.0306 0.6728 -5.0178 23 6 1.7050 -1.0801 -6.0497 24 7 2.2704 -2.2630 -5.9336 25 14 1.1877 -0.4532 -7.7316 26 1 2.3113 0.2977 -8.3471 27 1 0.8268 -1.6032 -8.5991 28 1 0.0137 0.4444 -7.5857 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8895 31 1 -0.3634 0.5128 -0.8905 32 1 1.6589 -0.2247 2.1388 33 1 1.6978 -1.7573 1.2350 34 1 3.9161 0.3398 1.2533 35 1 3.9346 -1.1883 2.1664 36 1 3.8350 -2.4851 0.0809 37 1 5.1902 -1.3315 -0.0188 38 1 6.1240 -1.4142 -1.8683 39 1 6.0682 0.2301 -1.1890 40 1 7.6353 1.7417 -2.5025 41 1 6.9379 0.2529 -6.4552 42 1 0.5979 0.3436 -2.4411 43 1 2.2596 0.9697 -2.5639 44 1 2.2905 -1.6291 -3.6040 45 1 2.4180 -2.8093 -6.7214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271741008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = 98.818475 kcal Electronic energy + Delta-G solvation = -28943.213973 eV Core-core repulsion = 25025.872531 eV Total energy + Delta-G solvation = -3917.341441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09890 -40.13274 -37.30669 -36.26040 -34.81393 -33.46411 -32.85750 -32.08123 -30.22037 -29.77703 -27.90973 -26.44893 -25.87967 -23.89206 -22.44169 -21.59321 -20.99325 -20.80513 -20.15024 -18.80380 -17.25402 -17.15068 -16.39987 -15.63567 -15.40728 -14.84710 -14.71128 -14.40405 -14.35570 -14.05834 -13.79851 -13.54759 -13.26960 -13.21031 -12.93620 -12.87284 -12.55759 -12.34601 -12.15031 -11.96543 -11.71220 -11.51510 -11.47003 -11.14569 -11.03067 -10.87880 -10.69307 -10.63902 -10.57543 -10.15760 -10.15111 -9.77061 -9.44531 -9.37773 -8.61168 -8.50469 -8.18154 -8.05713 -6.43068 -5.45485 -2.65330 1.90133 2.12274 2.90187 2.96669 3.14366 3.32039 3.60442 3.65227 3.65761 4.51287 4.63500 4.70176 4.76446 4.81004 4.83441 4.87534 5.01219 5.07452 5.21861 5.25904 5.33645 5.52708 5.64910 5.67665 5.67985 5.73491 5.80998 5.83118 5.85097 5.90054 5.98405 6.04290 6.13335 6.29400 6.41090 6.58940 6.63497 6.65849 6.87960 6.98081 7.22797 7.81073 7.87596 7.94310 8.71348 8.82014 9.83624 10.43187 10.77528 11.78024 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007574 B = 0.005307 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.170617 B = 5274.884292 C = 8247.849200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.109 3.891 7 N -0.616 5.616 8 C 0.452 3.548 9 O -0.403 6.403 10 C 0.119 3.881 11 N -0.351 5.351 12 C 0.061 3.939 13 C -0.183 4.183 14 Cl -0.055 7.055 15 C 0.052 3.948 16 N -0.216 5.216 17 C 0.150 3.850 18 H 0.069 0.931 19 C 0.162 3.838 20 N -0.692 5.692 21 C -0.210 4.210 22 H 0.060 0.940 23 C -0.015 4.015 24 N -0.931 5.931 25 Si 0.897 3.103 26 H -0.294 1.294 27 H -0.295 1.295 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.177 0.823 41 H 0.187 0.813 42 H 0.020 0.980 43 H 0.028 0.972 44 H 0.380 0.620 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.421 4.426 17.775 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.172 4.172 6 C -0.014 4.014 7 N -0.355 5.355 8 C 0.234 3.766 9 O -0.268 6.268 10 C -0.006 4.006 11 N -0.133 5.133 12 C -0.086 4.086 13 C -0.222 4.222 14 Cl -0.027 7.027 15 C -0.137 4.137 16 N -0.035 5.035 17 C 0.047 3.953 18 H 0.087 0.913 19 C 0.034 3.966 20 N -0.335 5.335 21 C -0.342 4.342 22 H 0.078 0.922 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.729 3.271 26 H -0.222 1.222 27 H -0.222 1.222 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.194 0.806 41 H 0.204 0.796 42 H 0.038 0.962 43 H 0.046 0.954 44 H 0.214 0.786 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.260 3.844 17.195 19.459 hybrid contribution 0.724 0.817 -0.943 1.443 sum 8.984 4.661 16.252 19.146 Atomic orbital electron populations 1.21850 0.94428 1.02175 1.01993 1.21463 0.96080 0.99845 0.94399 0.91058 1.21568 0.94921 1.00951 0.97635 1.21997 0.96587 1.01094 0.97538 1.21721 0.97427 0.97339 0.84937 1.47858 1.06358 1.63190 1.18127 1.20342 0.87794 0.83738 0.84715 1.91339 1.71050 1.39313 1.25058 1.21590 0.94220 1.01668 0.83137 1.47966 1.33507 1.25283 1.06560 1.22038 0.95353 0.93371 0.97832 1.20699 1.07107 1.01563 0.92802 1.98294 1.62307 1.55440 1.86684 1.23934 0.95059 0.93989 1.00668 1.78016 1.18394 1.20954 0.86132 1.21504 0.78487 0.99646 0.95618 0.91291 1.20866 0.96188 0.94402 0.85114 1.42181 1.71459 1.18624 1.01253 1.19043 1.30350 0.99940 0.84856 0.92164 1.24548 1.02397 0.96982 0.97033 1.69651 1.49717 1.10947 1.27783 0.86324 0.77829 0.77260 0.85646 1.22158 1.22203 1.21258 0.92538 0.92921 0.91548 0.91963 0.91774 0.91645 0.91120 0.91475 0.90654 0.87690 0.86825 0.80601 0.79649 0.96218 0.95412 0.78616 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.99 37.16 0.33 -1.38 16 2 C -0.10 -1.19 2.34 -90.50 -0.21 -1.40 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.05 5.17 -26.69 -0.14 -1.19 16 5 C -0.13 -1.07 6.10 -26.38 -0.16 -1.23 16 6 C 0.11 1.05 6.38 -3.49 -0.02 1.03 16 7 N -0.62 -8.89 2.97 -164.96 -0.49 -9.38 16 8 C 0.45 7.85 7.34 -10.98 -0.08 7.77 16 9 O -0.40 -9.43 9.43 5.56 0.05 -9.38 16 10 C 0.12 1.54 5.34 -5.19 -0.03 1.52 16 11 N -0.35 -5.65 3.40 -62.50 -0.21 -5.87 16 12 C 0.06 0.83 11.43 -17.16 -0.20 0.63 16 13 C -0.18 -2.76 6.65 -39.97 -0.27 -3.02 16 14 Cl -0.06 -0.72 29.30 -51.86 -1.52 -2.24 16 15 C 0.05 0.92 12.02 -17.34 -0.21 0.71 16 16 N -0.22 -4.42 11.66 30.64 0.36 -4.06 16 17 C 0.15 2.41 2.36 -67.60 -0.16 2.25 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.16 3.44 4.85 -4.04 -0.02 3.42 16 20 N -0.69 -18.50 3.20 -59.91 -0.19 -18.69 16 21 C -0.21 -6.31 9.73 -15.06 -0.15 -6.45 16 22 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.45 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -29.96 13.06 55.49 0.72 -29.23 16 25 Si 0.90 24.31 29.55 -169.99 -5.02 19.28 16 26 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 27 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.07 0.88 6.38 -51.93 -0.33 0.55 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 38 H 0.11 1.18 7.72 -51.93 -0.40 0.78 16 39 H 0.11 0.95 7.84 -51.93 -0.41 0.54 16 40 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.19 2.98 8.06 -52.49 -0.42 2.55 16 42 H 0.02 0.43 6.15 -51.93 -0.32 0.11 16 43 H 0.03 0.66 6.37 -51.93 -0.33 0.33 16 44 H 0.38 10.92 7.22 -40.82 -0.29 10.62 16 45 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -37.57 371.21 -8.70 -46.27 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.59 Total: 5.60 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.40 Total: 2.10 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: 0.19 Total: -67.23 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.05 Total: -9.38 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.02 Total: 19.28 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.52 Total: -2.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.57 -8.70 -46.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271741008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.086 kcal (2) G-P(sol) polarization free energy of solvation -37.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds