Wall clock time and date at job start Sat Apr 11 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49592 * 2 1 4 4 C 1.53035 * 109.52506 * 120.08360 * 2 1 3 5 5 C 1.53042 * 109.53410 * 181.33251 * 4 2 1 6 6 C 1.53628 * 109.24329 * 298.50731 * 5 4 2 7 7 N 1.46921 * 108.54025 * 54.85910 * 6 5 4 8 8 C 1.34778 * 120.63197 * 126.36835 * 7 6 5 9 9 O 1.21280 * 120.00067 * 174.62563 * 8 7 6 10 10 C 1.50700 * 119.99469 * 354.62971 * 8 7 6 11 11 N 1.46508 * 109.46740 * 179.97438 * 10 8 7 12 12 C 1.35048 * 126.03436 * 125.00142 * 11 10 8 13 13 C 1.35376 * 107.72578 * 179.97438 * 12 11 10 14 14 Cl 1.73596 * 126.04626 * 180.02562 * 13 12 11 15 15 C 1.39929 * 107.90645 * 0.02562 * 13 12 11 16 16 N 1.30852 * 108.21380 * 359.71786 * 15 13 12 17 17 C 1.46927 * 118.73974 * 306.09383 * 7 6 5 18 18 H 1.08997 * 109.58766 * 294.07202 * 17 7 6 19 19 C 1.53001 * 109.58773 * 173.78863 * 17 7 6 20 20 N 1.46498 * 109.47017 * 73.01120 * 19 17 7 21 21 C 1.36942 * 120.00303 * 174.78122 * 20 19 17 22 22 H 1.07998 * 119.99543 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00165 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00017 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00074 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47364 * 89.99620 * 25 23 21 27 27 H 1.48500 * 109.47238 * 209.99933 * 25 23 21 28 28 H 1.48501 * 109.46875 * 329.99961 * 25 23 21 29 29 H 1.08996 * 109.47626 * 180.02562 * 1 2 3 30 30 H 1.09012 * 109.46770 * 300.06480 * 1 2 3 31 31 H 1.08994 * 109.47591 * 60.06053 * 1 2 3 32 32 H 1.08994 * 109.46099 * 301.34857 * 4 2 1 33 33 H 1.08995 * 109.46128 * 61.30910 * 4 2 1 34 34 H 1.08995 * 109.50240 * 58.58854 * 5 4 2 35 35 H 1.09006 * 109.49609 * 178.65284 * 5 4 2 36 36 H 1.09002 * 109.73784 * 295.12245 * 6 5 4 37 37 H 1.08997 * 109.66163 * 174.55487 * 6 5 4 38 38 H 1.08999 * 109.47452 * 59.99998 * 10 8 7 39 39 H 1.09000 * 109.47316 * 299.99439 * 10 8 7 40 40 H 1.07992 * 126.13624 * 0.02562 * 12 11 10 41 41 H 1.07998 * 125.89367 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47097 * 193.01072 * 19 17 7 43 43 H 1.08999 * 109.47333 * 313.01355 * 19 17 7 44 44 H 0.97006 * 119.99917 * 354.78364 * 20 19 17 45 45 H 0.96999 * 119.99693 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5715 -0.6942 1.2652 6 6 4.1057 -1.4306 0.0273 7 7 3.5046 -0.8281 -1.1703 8 6 4.2806 -0.3849 -2.1793 9 8 3.7715 0.0207 -3.2027 10 6 5.7807 -0.3933 -2.0357 11 7 6.3913 0.1324 -3.2593 12 6 7.2634 1.1608 -3.3335 13 6 7.5888 1.3321 -4.6364 14 17 8.6787 2.5263 -5.2686 15 6 6.8913 0.3762 -5.3833 16 7 6.1779 -0.3466 -4.5582 17 6 2.0412 -0.7234 -1.2499 18 1 1.6056 -1.7214 -1.2983 19 6 1.6508 0.0679 -2.4998 20 7 1.8738 -0.7573 -3.6896 21 6 1.4941 -0.2980 -4.9225 22 1 1.0306 0.6728 -5.0178 23 6 1.7050 -1.0801 -6.0497 24 7 2.2704 -2.2630 -5.9336 25 14 1.1877 -0.4532 -7.7316 26 1 2.3113 0.2977 -8.3471 27 1 0.8268 -1.6032 -8.5991 28 1 0.0137 0.4444 -7.5857 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8895 31 1 -0.3634 0.5128 -0.8905 32 1 1.6589 -0.2247 2.1388 33 1 1.6978 -1.7573 1.2350 34 1 3.9161 0.3398 1.2533 35 1 3.9346 -1.1883 2.1664 36 1 3.8350 -2.4851 0.0809 37 1 5.1902 -1.3315 -0.0188 38 1 6.1240 -1.4142 -1.8683 39 1 6.0682 0.2301 -1.1890 40 1 7.6353 1.7417 -2.5025 41 1 6.9379 0.2529 -6.4552 42 1 0.5979 0.3436 -2.4411 43 1 2.2596 0.9697 -2.5639 44 1 2.2905 -1.6291 -3.6040 45 1 2.4180 -2.8093 -6.7214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271741008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:39 Heat of formation + Delta-G solvation = 72.928310 kcal Electronic energy + Delta-G solvation = -28944.336654 eV Core-core repulsion = 25025.872531 eV Total energy + Delta-G solvation = -3918.464123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.29307 -41.34773 -38.47058 -37.34034 -36.48376 -34.86736 -34.05731 -33.53554 -31.90694 -30.99528 -29.23245 -27.69006 -27.04735 -25.53799 -24.01894 -22.73345 -22.20286 -22.02407 -21.17943 -20.03294 -19.11282 -18.32693 -17.81626 -16.83064 -16.74062 -16.44724 -15.95342 -15.58827 -15.48131 -15.39645 -15.13401 -14.91529 -14.67754 -14.48386 -14.19398 -14.00657 -13.85115 -13.68183 -13.34536 -13.21927 -12.94666 -12.84752 -12.77871 -12.59159 -12.49014 -12.25437 -12.11949 -11.89821 -11.83518 -11.59894 -11.49658 -11.33911 -11.08269 -10.84582 -10.65939 -9.87283 -9.40249 -9.30856 -8.59259 -7.81069 -4.98317 0.77779 1.04546 1.38503 1.43207 1.49132 1.66966 1.82858 1.91013 2.17814 2.60944 3.47755 3.53059 3.68615 3.78882 3.82608 3.90472 3.96624 4.06312 4.14703 4.17058 4.33368 4.37044 4.45149 4.55749 4.59719 4.66041 4.66899 4.81324 4.86396 4.90005 4.98681 5.05201 5.16344 5.26811 5.30568 5.32283 5.37290 5.42187 5.51069 5.58185 5.81015 5.94024 6.38828 6.64315 6.64836 7.45628 7.57489 8.27834 8.49626 9.43023 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007574 B = 0.005307 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.170617 B = 5274.884292 C = 8247.849200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.110 4.110 5 C -0.126 4.126 6 C 0.099 3.901 7 N -0.612 5.612 8 C 0.447 3.553 9 O -0.479 6.479 10 C 0.119 3.881 11 N -0.354 5.354 12 C 0.082 3.918 13 C -0.198 4.198 14 Cl -0.039 7.039 15 C 0.035 3.965 16 N -0.287 5.287 17 C 0.158 3.842 18 H 0.051 0.949 19 C 0.168 3.832 20 N -0.697 5.697 21 C -0.208 4.208 22 H 0.053 0.947 23 C -0.076 4.076 24 N -0.964 5.964 25 Si 0.957 3.043 26 H -0.300 1.300 27 H -0.293 1.293 28 H -0.273 1.273 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.173 0.827 40 H 0.228 0.772 41 H 0.184 0.816 42 H 0.014 0.986 43 H 0.009 0.991 44 H 0.366 0.634 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.857 5.423 21.619 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.164 4.164 6 C -0.022 4.022 7 N -0.350 5.350 8 C 0.231 3.769 9 O -0.349 6.349 10 C -0.005 4.005 11 N -0.136 5.136 12 C -0.065 4.065 13 C -0.237 4.237 14 Cl -0.011 7.011 15 C -0.153 4.153 16 N -0.107 5.107 17 C 0.054 3.946 18 H 0.069 0.931 19 C 0.042 3.958 20 N -0.337 5.337 21 C -0.341 4.341 22 H 0.071 0.929 23 C -0.268 4.268 24 N -0.617 5.617 25 Si 0.788 3.212 26 H -0.228 1.228 27 H -0.220 1.220 28 H -0.198 1.198 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.127 0.873 38 H 0.144 0.856 39 H 0.190 0.810 40 H 0.245 0.755 41 H 0.201 0.799 42 H 0.032 0.968 43 H 0.026 0.974 44 H 0.198 0.802 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.686 4.851 21.121 23.737 hybrid contribution 0.313 0.574 -2.000 2.104 sum 9.999 5.425 19.122 22.250 Atomic orbital electron populations 1.21845 0.94360 1.02127 1.02040 1.21395 0.96117 0.99443 0.93817 0.91361 1.21574 0.96222 1.00623 0.96339 1.21983 0.95188 1.01587 0.97617 1.22152 0.99295 0.97352 0.83432 1.48021 1.05477 1.62289 1.19189 1.21221 0.89935 0.81662 0.84056 1.91312 1.72815 1.43074 1.27706 1.21944 0.90558 1.04343 0.83637 1.48173 1.33785 1.25713 1.05950 1.22805 0.93225 0.91861 0.98599 1.20801 1.07743 1.01852 0.93274 1.98292 1.61611 1.54543 1.86684 1.24097 0.95376 0.94880 1.00899 1.77903 1.20646 1.23553 0.88641 1.21279 0.80184 0.98181 0.94980 0.93076 1.20859 0.95251 0.93907 0.85810 1.42214 1.71186 1.18481 1.01845 1.19315 1.28907 0.99237 0.86632 0.92909 1.25231 1.03707 0.97537 1.00309 1.69810 1.51757 1.12104 1.28004 0.85358 0.77501 0.76781 0.81562 1.22794 1.21972 1.19835 0.92654 0.90238 0.94070 0.89754 0.91816 0.91013 0.87880 0.91307 0.87298 0.85596 0.81001 0.75542 0.79932 0.96819 0.97381 0.80205 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.99 71.98 0.65 -2.63 16 2 C -0.09 -1.99 2.34 -10.72 -0.03 -2.01 16 3 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.11 -1.62 5.17 30.62 0.16 -1.46 16 5 C -0.13 -1.36 6.10 30.82 0.19 -1.18 16 6 C 0.10 1.51 6.38 86.51 0.55 2.06 16 7 N -0.61 -16.80 2.97 -794.19 -2.36 -19.15 16 8 C 0.45 15.24 7.34 87.66 0.64 15.88 16 9 O -0.48 -23.23 9.43 -3.03 -0.03 -23.26 16 10 C 0.12 2.73 5.34 85.63 0.46 3.18 16 11 N -0.35 -10.93 3.40 -351.65 -1.19 -12.13 16 12 C 0.08 2.02 11.43 83.54 0.95 2.98 16 13 C -0.20 -5.82 6.65 22.02 0.15 -5.67 16 14 Cl -0.04 -0.97 29.30 -2.72 -0.08 -1.05 16 15 C 0.03 1.29 12.02 85.25 1.02 2.32 16 16 N -0.29 -12.16 11.66 -56.98 -0.66 -12.83 16 17 C 0.16 5.07 2.36 44.98 0.11 5.17 16 18 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 19 C 0.17 7.48 4.85 86.38 0.42 7.90 16 20 N -0.70 -39.22 3.20 -343.45 -1.10 -40.31 16 21 C -0.21 -13.09 9.73 84.03 0.82 -12.27 16 22 H 0.05 3.32 7.83 -2.91 -0.02 3.29 16 23 C -0.08 -4.89 5.50 84.86 0.47 -4.43 16 24 N -0.96 -64.93 13.06 21.65 0.28 -64.64 16 25 Si 0.96 52.04 29.55 68.60 2.03 54.07 16 26 H -0.30 -16.44 7.11 99.48 0.71 -15.73 16 27 H -0.29 -15.69 7.11 99.48 0.71 -14.99 16 28 H -0.27 -14.06 7.11 99.48 0.71 -13.35 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.04 1.11 6.38 -2.39 -0.02 1.10 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 0.95 5.93 -2.39 -0.01 0.93 16 38 H 0.13 2.39 7.72 -2.39 -0.02 2.38 16 39 H 0.17 1.85 7.84 -2.39 -0.02 1.84 16 40 H 0.23 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.18 6.37 8.06 -2.91 -0.02 6.35 16 42 H 0.01 0.63 6.15 -2.39 -0.01 0.62 16 43 H 0.01 0.42 6.37 -2.39 -0.02 0.40 16 44 H 0.37 22.25 7.22 -92.70 -0.67 21.58 16 45 H 0.24 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -90.53 371.21 3.79 -86.75 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.34 Total: 22.71 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.56 Total: 9.86 kcal Atomic # 7 Polarization: -144.04 SS G_CDS: -5.03 Total: -149.06 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.03 Total: -23.26 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 2.03 Total: 54.07 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -90.53 3.79 -86.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271741008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.675 kcal (2) G-P(sol) polarization free energy of solvation -90.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds