Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49914 * 2 1 4 4 C 1.53044 * 109.52424 * 239.92384 * 2 1 3 5 5 C 1.53043 * 109.53633 * 178.66682 * 4 2 1 6 6 C 1.53197 * 109.31285 * 61.36470 * 5 4 2 7 7 N 1.46925 * 108.77470 * 305.36225 * 6 5 4 8 8 C 1.34775 * 120.62947 * 233.60793 * 7 6 5 9 9 O 1.21277 * 119.99674 * 185.11163 * 8 7 6 10 10 C 1.50699 * 120.00035 * 5.11198 * 8 7 6 11 11 N 1.46504 * 109.47100 * 179.97438 * 10 8 7 12 12 C 1.35044 * 126.03631 * 124.99942 * 11 10 8 13 13 C 1.35372 * 107.72515 * 179.97438 * 12 11 10 14 14 Cl 1.73605 * 126.04207 * 179.97438 * 13 12 11 15 15 C 1.39924 * 107.91138 * 0.02562 * 13 12 11 16 16 N 1.30851 * 108.21005 * 359.75605 * 15 13 12 17 17 C 1.46926 * 118.73712 * 53.61230 * 7 6 5 18 18 H 1.08997 * 109.70647 * 66.24400 * 17 7 6 19 19 C 1.52997 * 109.58461 * 186.60215 * 17 7 6 20 20 N 1.46504 * 109.47446 * 286.85259 * 19 17 7 21 21 C 1.36930 * 120.00173 * 185.39122 * 20 19 17 22 22 H 1.08002 * 120.00126 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99887 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99667 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99845 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47437 * 89.99916 * 25 23 21 27 27 H 1.48505 * 109.46744 * 209.99443 * 25 23 21 28 28 H 1.48496 * 109.47399 * 329.99358 * 25 23 21 29 29 H 1.08998 * 109.46850 * 299.92965 * 1 2 3 30 30 H 1.08997 * 109.47308 * 59.93019 * 1 2 3 31 31 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.45769 * 298.68253 * 4 2 1 33 33 H 1.08999 * 109.46131 * 58.64587 * 4 2 1 34 34 H 1.09004 * 109.49238 * 181.31432 * 5 4 2 35 35 H 1.08992 * 109.49643 * 301.41130 * 5 4 2 36 36 H 1.09004 * 109.58512 * 65.15147 * 6 5 4 37 37 H 1.08998 * 109.58436 * 185.57551 * 6 5 4 38 38 H 1.09004 * 109.47340 * 300.00086 * 10 8 7 39 39 H 1.08998 * 109.47150 * 59.99677 * 10 8 7 40 40 H 1.08010 * 126.13372 * 359.97438 * 12 11 10 41 41 H 1.07993 * 125.89536 * 179.97438 * 15 13 12 42 42 H 1.09004 * 109.47087 * 46.85212 * 19 17 7 43 43 H 1.08998 * 109.47251 * 166.84895 * 19 17 7 44 44 H 0.96994 * 119.99235 * 5.38996 * 20 19 17 45 45 H 0.97010 * 119.99565 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7229 -1.2482 5 6 3.5715 -0.6941 -1.2654 6 6 4.1060 -1.4255 -0.0300 7 7 3.5047 -0.8281 1.1702 8 6 4.2808 -0.3846 2.1788 9 8 3.7718 0.0209 3.2022 10 6 5.7809 -0.3927 2.0350 11 7 6.3915 0.1344 3.2580 12 6 7.3200 -0.4891 4.0148 13 6 7.6235 0.3276 5.0508 14 17 8.7647 -0.0075 6.3154 15 6 6.8539 1.4891 4.9229 16 7 6.1190 1.3762 3.8461 17 6 2.0413 -0.7236 1.2498 18 1 1.6038 -1.7206 1.2994 19 6 1.6511 0.0706 2.4979 20 7 1.8715 -0.7528 3.6894 21 6 1.4882 -0.2920 4.9206 22 1 1.0237 0.6786 5.0133 23 6 1.6965 -1.0725 6.0495 24 7 1.3285 -0.6294 7.2329 25 14 2.5004 -2.7510 5.8891 26 1 3.9728 -2.6093 6.0197 27 1 1.9927 -3.6472 6.9588 28 1 2.1748 -3.3310 4.5614 29 1 -0.3633 0.5127 0.8906 30 1 -0.3634 0.5149 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6979 -1.7573 -1.2352 33 1 1.6588 -0.2245 -2.1389 34 1 3.9345 -1.1887 -2.1664 35 1 3.9160 0.3399 -1.2535 36 1 3.8387 -2.4808 -0.0860 37 1 5.1902 -1.3229 0.0148 38 1 6.1244 -1.4135 1.8677 39 1 6.0680 0.2306 1.1882 40 1 7.7444 -1.4645 3.8271 41 1 6.8669 2.3346 5.5947 42 1 2.2614 0.9715 2.5609 43 1 0.5988 0.3482 2.4376 44 1 2.2889 -1.6244 3.6061 45 1 1.4745 -1.1746 8.0219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271741010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = 100.393460 kcal Electronic energy + Delta-G solvation = -29062.001331 eV Core-core repulsion = 25144.728186 eV Total energy + Delta-G solvation = -3917.273145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.22238 -40.30411 -37.47009 -36.28520 -35.03593 -33.61933 -32.98784 -32.18545 -30.60657 -29.91904 -28.15024 -26.60868 -26.13292 -23.98620 -22.25464 -21.70541 -21.09738 -20.87048 -20.21151 -19.04220 -17.60017 -17.32256 -16.67413 -15.71549 -15.64634 -14.89710 -14.72652 -14.68770 -14.36394 -14.15185 -14.02627 -13.70719 -13.35023 -13.29311 -13.07697 -12.85818 -12.79505 -12.48040 -12.23909 -12.04241 -11.85726 -11.68682 -11.56604 -11.24765 -11.19903 -11.14626 -10.78632 -10.75186 -10.67287 -10.31743 -10.20504 -9.92060 -9.51877 -9.37596 -8.70871 -8.66094 -8.30065 -8.21135 -6.80138 -5.53284 -2.79518 1.77593 2.06095 2.78545 2.87458 2.93184 3.14336 3.45652 3.52225 3.55311 4.36335 4.53848 4.58938 4.69671 4.72735 4.75137 4.79393 4.85594 4.91582 5.10015 5.14568 5.22218 5.41759 5.54794 5.57463 5.58916 5.60316 5.71280 5.72761 5.77617 5.78814 5.80805 5.95169 6.02050 6.16009 6.25036 6.39429 6.46852 6.51608 6.76372 6.87274 7.11016 7.61691 7.71009 8.21582 8.59477 8.65975 9.45826 10.19205 10.39835 11.66904 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009312 B = 0.005070 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.310919 B = 5521.062840 C = 7633.877175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.108 3.892 7 N -0.617 5.617 8 C 0.452 3.548 9 O -0.409 6.409 10 C 0.119 3.881 11 N -0.351 5.351 12 C 0.068 3.932 13 C -0.181 4.181 14 Cl -0.050 7.050 15 C 0.061 3.939 16 N -0.241 5.241 17 C 0.146 3.854 18 H 0.069 0.931 19 C 0.166 3.834 20 N -0.721 5.721 21 C -0.207 4.207 22 H 0.085 0.915 23 C -0.002 4.002 24 N -0.943 5.943 25 Si 0.884 3.116 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.285 1.285 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.179 0.821 41 H 0.189 0.811 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.355 0.645 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.703 -1.402 -19.717 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.173 4.173 6 C -0.015 4.015 7 N -0.356 5.356 8 C 0.234 3.766 9 O -0.274 6.274 10 C -0.007 4.007 11 N -0.133 5.133 12 C -0.079 4.079 13 C -0.220 4.220 14 Cl -0.022 7.022 15 C -0.127 4.127 16 N -0.060 5.060 17 C 0.043 3.957 18 H 0.087 0.913 19 C 0.039 3.961 20 N -0.365 5.365 21 C -0.337 4.337 22 H 0.103 0.897 23 C -0.196 4.196 24 N -0.593 5.593 25 Si 0.716 3.284 26 H -0.217 1.217 27 H -0.223 1.223 28 H -0.212 1.212 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.196 0.804 41 H 0.206 0.794 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.187 0.813 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.481 -0.537 -19.686 22.308 hybrid contribution 1.457 -1.914 0.564 2.471 sum 11.938 -2.450 -19.122 22.675 Atomic orbital electron populations 1.21859 0.94255 1.02163 1.02250 1.21459 0.96207 1.00028 0.94083 0.90722 1.21576 0.94856 1.00899 0.97753 1.21921 0.96629 1.01324 0.97407 1.21665 0.97519 0.97326 0.84999 1.47954 1.06475 1.63135 1.18052 1.20459 0.88028 0.83177 0.84929 1.91358 1.71185 1.39143 1.25729 1.21603 0.93928 1.00673 0.84474 1.47819 1.30827 1.13820 1.20869 1.22086 0.94069 0.98952 0.92806 1.20685 1.05386 0.98921 0.96971 1.98305 1.58591 1.95287 1.50055 1.23871 0.93919 0.98428 0.96520 1.77642 1.19690 0.98570 1.10147 1.21576 0.78379 0.99660 0.96103 0.91327 1.20866 0.97041 0.94388 0.83847 1.42529 1.72801 1.17962 1.03243 1.18967 1.30114 1.01823 0.82841 0.89740 1.24522 1.01909 0.97953 0.95233 1.69696 1.54490 1.37704 0.97440 0.86530 0.79663 0.86132 0.76032 1.21671 1.22275 1.21231 0.91377 0.92746 0.92597 0.91832 0.91769 0.90991 0.91440 0.91497 0.90545 0.86753 0.87347 0.80435 0.79372 0.94095 0.95208 0.81299 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.99 37.16 0.33 -1.31 16 2 C -0.10 -1.13 2.34 -90.50 -0.21 -1.34 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -0.98 5.17 -26.69 -0.14 -1.12 16 5 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 6 C 0.11 0.92 6.35 -3.71 -0.02 0.90 16 7 N -0.62 -8.28 2.97 -165.22 -0.49 -8.77 16 8 C 0.45 7.38 7.34 -10.99 -0.08 7.30 16 9 O -0.41 -9.16 9.44 5.56 0.05 -9.11 16 10 C 0.12 1.42 5.34 -5.19 -0.03 1.39 16 11 N -0.35 -5.43 3.40 -62.50 -0.21 -5.64 16 12 C 0.07 0.95 11.43 -17.16 -0.20 0.76 16 13 C -0.18 -2.77 6.65 -39.97 -0.27 -3.04 16 14 Cl -0.05 -0.69 29.30 -51.86 -1.52 -2.21 16 15 C 0.06 1.00 12.02 -17.34 -0.21 0.79 16 16 N -0.24 -4.41 11.65 30.64 0.36 -4.05 16 17 C 0.15 2.20 2.37 -67.60 -0.16 2.04 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 19 C 0.17 3.39 4.85 -4.04 -0.02 3.37 16 20 N -0.72 -18.31 3.00 -59.91 -0.18 -18.49 16 21 C -0.21 -6.31 10.22 -15.06 -0.15 -6.46 16 22 H 0.08 2.78 8.06 -52.49 -0.42 2.36 16 23 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 24 N -0.94 -31.76 13.97 55.49 0.78 -30.98 16 25 Si 0.88 24.32 27.74 -169.99 -4.71 19.61 16 26 H -0.29 -8.11 7.11 56.52 0.40 -7.70 16 27 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 28 H -0.29 -7.37 6.52 56.52 0.37 -7.01 16 29 H 0.07 0.88 6.37 -51.93 -0.33 0.54 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.46 5.93 -51.93 -0.31 0.15 16 38 H 0.11 0.94 7.66 -51.93 -0.40 0.55 16 39 H 0.11 0.99 7.90 -51.93 -0.41 0.58 16 40 H 0.18 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.19 2.65 8.06 -52.49 -0.42 2.22 16 42 H 0.04 0.94 6.36 -51.93 -0.33 0.61 16 43 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16 44 H 0.35 9.04 5.08 -40.82 -0.21 8.83 16 45 H 0.25 8.20 8.31 -40.82 -0.34 7.87 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -39.05 368.05 -8.34 -47.39 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.54 Total: 4.75 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.41 Total: 1.96 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: 0.25 Total: -67.93 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.05 Total: -9.11 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.71 Total: 19.61 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.52 Total: -2.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.05 -8.34 -47.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271741010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.787 kcal (2) G-P(sol) polarization free energy of solvation -39.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds