Wall clock time and date at job start Sat Apr 11 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.64435 * 2 1 4 4 C 1.54323 * 110.71807 * 123.14173 * 2 1 3 5 5 N 1.47021 * 107.27097 * 140.55956 * 4 2 1 6 6 C 1.34776 * 125.65152 * 181.02452 * 5 4 2 7 7 O 1.21280 * 120.00458 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99564 * 0.02562 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47429 * 108.70411 * 1.28716 * 5 4 2 19 19 C 1.55132 * 104.72037 * 335.55463 * 18 5 4 20 20 H 1.09008 * 111.19070 * 279.19058 * 19 18 5 21 21 N 1.46896 * 110.93855 * 155.29226 * 19 18 5 22 22 C 1.46891 * 111.00413 * 92.95661 * 21 19 18 23 23 C 1.50701 * 109.47256 * 179.97438 * 22 21 19 24 24 N 1.33319 * 126.54941 * 269.68747 * 23 22 21 25 25 N 1.28997 * 107.34989 * 179.83712 * 24 23 22 26 26 N 1.28779 * 108.72678 * 0.43078 * 25 24 23 27 27 C 1.46506 * 125.44234 * 179.72813 * 26 25 24 28 28 N 1.28877 * 109.10514 * 359.72929 * 26 25 24 29 29 H 1.08994 * 109.47714 * 298.31125 * 1 2 3 30 30 H 1.09010 * 109.46725 * 58.31403 * 1 2 3 31 31 H 1.09001 * 109.46858 * 178.30515 * 1 2 3 32 32 H 1.09002 * 109.88568 * 21.14211 * 4 2 1 33 33 H 1.09003 * 110.01439 * 260.04626 * 4 2 1 34 34 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 35 35 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 36 36 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 37 37 H 1.08997 * 110.36443 * 94.48240 * 18 5 4 38 38 H 1.09001 * 110.36590 * 216.81013 * 18 5 4 39 39 H 1.00900 * 111.00070 * 328.99772 * 21 19 18 40 40 H 1.09006 * 109.47151 * 300.00154 * 22 21 19 41 41 H 1.08998 * 109.47522 * 59.99690 * 22 21 19 42 42 H 1.09001 * 109.46817 * 269.99930 * 27 26 25 43 43 H 1.08995 * 109.47494 * 30.00339 * 27 26 25 44 44 H 1.09007 * 109.46397 * 150.00396 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2445 -1.5494 0.7417 6 6 3.9923 -2.3810 1.4938 7 8 4.9384 -2.9585 1.0015 8 6 3.6527 -2.5934 2.9467 9 16 4.8325 -3.7549 3.6784 10 6 4.2179 -3.8163 5.3286 11 1 3.3528 -3.2318 5.6047 12 6 4.8457 -4.6160 6.2736 13 7 5.8998 -5.3287 5.9370 14 14 4.1937 -4.6817 8.0229 15 1 3.0080 -3.7957 8.1429 16 1 5.2494 -4.2249 8.9621 17 1 3.8058 -6.0762 8.3546 18 6 3.4666 -1.2466 -0.6839 19 6 2.0790 -0.7974 -1.2124 20 1 1.4452 -1.6560 -1.4347 21 7 2.2211 0.0677 -2.3911 22 6 2.1552 -0.7168 -3.6311 23 6 2.3037 0.2026 -4.8159 24 7 1.3193 0.8171 -5.4723 25 7 1.8606 1.5116 -6.4150 26 7 3.1366 1.3433 -6.3722 27 6 4.1058 1.9593 -7.2820 28 7 3.4246 0.5464 -5.4011 29 1 -0.3634 0.4873 0.9047 30 1 -0.3633 0.5399 -0.8746 31 1 -0.3633 -1.0272 -0.0304 32 1 1.3129 -1.4732 1.5801 33 1 2.3735 -0.1010 1.9999 34 1 2.6445 -2.9992 3.0287 35 1 3.7055 -1.6415 3.4750 36 1 6.2382 -5.2949 5.0285 37 1 4.1947 -0.4427 -0.7920 38 1 3.8032 -2.1382 -1.2131 39 1 3.0757 0.6023 -2.3463 40 1 2.9594 -1.4527 -3.6387 41 1 1.1943 -1.2284 -3.6869 42 1 4.2614 1.3081 -8.1421 43 1 3.7252 2.9231 -7.6200 44 1 5.0519 2.1048 -6.7605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274173388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:45 Heat of formation + Delta-G solvation = 96.902763 kcal Electronic energy + Delta-G solvation = -26198.136579 eV Core-core repulsion = 22315.048523 eV Total energy + Delta-G solvation = -3883.088055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.73407 -40.17424 -38.06826 -36.18695 -35.10096 -33.48355 -32.58132 -32.52212 -30.47832 -29.42324 -28.00795 -26.47077 -25.91177 -24.80561 -23.53047 -22.78684 -22.29394 -20.67003 -19.45763 -18.25943 -18.01818 -17.91283 -16.82292 -16.63607 -16.14705 -15.33393 -15.13828 -14.98272 -14.42225 -14.26616 -14.09665 -14.02697 -13.84480 -13.68485 -13.52826 -13.32483 -13.06292 -12.91740 -12.47675 -12.38551 -12.33489 -12.20694 -11.89961 -11.84782 -11.46207 -11.38656 -11.31496 -11.24626 -10.97980 -10.90329 -10.59950 -10.20936 -9.59530 -9.57020 -9.01700 -8.96561 -8.58848 -8.22715 -6.68215 -6.62940 -4.00901 0.79334 1.49185 1.70774 2.74386 2.93324 3.27572 3.34737 3.40252 3.44661 3.54472 3.75725 3.84673 4.17596 4.24720 4.28613 4.29684 4.37918 4.59174 4.60891 4.84195 4.94405 4.95397 4.99520 5.09486 5.21836 5.26004 5.30083 5.35264 5.37608 5.43111 5.50486 5.55644 5.61266 5.68416 5.73688 5.77632 5.92102 6.01132 6.05469 6.24911 6.46504 6.76848 7.54830 7.92890 7.95522 8.42454 8.49646 9.26510 10.81128 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027357 B = 0.001840 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.241376 B =15216.598710 C =16007.890183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.089 0.911 4 C 0.102 3.898 5 N -0.622 5.622 6 C 0.547 3.453 7 O -0.517 6.517 8 C -0.124 4.124 9 S -0.118 6.118 10 C -0.607 4.607 11 H 0.067 0.933 12 C 0.035 3.965 13 N -0.885 5.885 14 Si 1.090 2.910 15 H -0.288 1.288 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.081 3.919 19 C 0.081 3.919 20 H 0.101 0.899 21 N -0.666 5.666 22 C 0.155 3.845 23 C 0.173 3.827 24 N -0.266 5.266 25 N -0.065 5.065 26 N -0.142 5.142 27 C 0.094 3.906 28 N -0.304 5.304 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.278 0.722 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.348 0.652 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 16.622 -24.593 31.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.021 4.021 5 N -0.360 5.360 6 C 0.336 3.664 7 O -0.391 6.391 8 C -0.275 4.275 9 S 0.108 5.892 10 C -0.755 4.755 11 H 0.085 0.915 12 C -0.175 4.175 13 N -0.519 5.519 14 Si 0.916 3.084 15 H -0.214 1.214 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.044 4.044 19 C -0.030 4.030 20 H 0.119 0.881 21 N -0.297 5.297 22 C 0.024 3.976 23 C -0.110 4.110 24 N -0.138 5.138 25 N -0.058 5.058 26 N -0.054 5.054 27 C -0.046 4.046 28 N -0.156 5.156 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.167 0.833 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.317 15.613 -24.364 30.109 hybrid contribution -0.312 0.859 -0.536 1.059 sum -8.629 16.471 -24.901 31.077 Atomic orbital electron populations 1.21704 0.93226 1.02192 1.02400 1.22173 0.96874 0.99473 0.92256 0.89254 1.22195 0.87891 0.94906 0.97131 1.48327 1.31087 1.46072 1.10487 1.20031 0.81429 0.77288 0.87682 1.90709 1.27957 1.47092 1.73358 1.23284 1.05368 1.05138 0.93669 1.84821 1.38910 1.55375 1.10050 1.23757 1.20334 1.36257 0.95110 0.91494 1.26062 0.94411 0.92084 1.04986 1.70736 1.21432 1.37417 1.22358 0.83247 0.75396 0.76522 0.73189 1.21374 1.20886 1.20866 1.22934 0.97351 1.01296 0.82828 1.22944 0.95419 0.95207 0.89442 0.88096 1.60470 1.43880 1.25520 0.99878 1.20176 1.03988 0.90834 0.82641 1.25413 0.84328 1.01164 1.00133 1.75869 1.26561 1.08183 1.03180 1.79013 0.91624 1.17928 1.17279 1.50043 1.06524 1.28354 1.20441 1.22457 0.90675 0.99674 0.91768 1.74710 1.27623 1.10623 1.02640 0.92359 0.91409 0.92505 0.90907 0.91111 0.88962 0.89011 0.90932 0.91600 0.90365 0.83258 0.91513 0.87320 0.87985 0.86882 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.13 37.16 0.34 -0.65 16 2 C -0.09 -0.72 3.24 -88.79 -0.29 -1.01 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.10 1.09 6.08 -3.06 -0.02 1.07 16 5 N -0.62 -8.77 3.32 -170.38 -0.57 -9.34 16 6 C 0.55 10.54 7.87 -10.98 -0.09 10.46 16 7 O -0.52 -11.95 16.12 5.56 0.09 -11.86 16 8 C -0.12 -2.56 5.35 36.01 0.19 -2.36 16 9 S -0.12 -3.21 19.60 -107.50 -2.11 -5.31 16 10 C -0.61 -17.56 9.50 30.94 0.29 -17.27 16 11 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 12 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 13 N -0.89 -27.64 13.67 55.49 0.76 -26.88 16 14 Si 1.09 25.11 29.92 -169.99 -5.09 20.02 16 15 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.08 0.91 6.51 -2.41 -0.02 0.90 16 19 C 0.08 0.67 2.84 -65.45 -0.19 0.48 16 20 H 0.10 0.81 7.72 -51.92 -0.40 0.41 16 21 N -0.67 -5.12 6.40 -105.60 -0.68 -5.79 16 22 C 0.16 1.17 6.17 -4.98 -0.03 1.14 16 23 C 0.17 1.65 7.88 -156.62 -1.23 0.42 16 24 N -0.27 -2.97 12.50 32.45 0.41 -2.57 16 25 N -0.06 -0.65 13.25 60.35 0.80 0.15 16 26 N -0.14 -1.08 4.40 -16.69 -0.07 -1.15 16 27 C 0.09 0.17 11.63 59.85 0.70 0.87 16 28 N -0.30 -2.79 12.13 32.47 0.39 -2.40 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 35 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 36 H 0.28 8.88 7.13 -40.82 -0.29 8.59 16 37 H 0.07 0.72 7.76 -51.93 -0.40 0.31 16 38 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 39 H 0.35 2.67 8.18 -39.29 -0.32 2.35 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.11 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.10 0.02 8.14 -51.93 -0.42 -0.41 16 43 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.11 0.06 8.14 -51.92 -0.42 -0.37 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -38.31 386.40 -7.19 -45.50 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.51 Total: -1.15 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.43 Total: -5.03 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 1.04 Total: -47.98 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.09 Total: 20.02 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.11 Total: -5.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.31 -7.19 -45.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.399 kcal (2) G-P(sol) polarization free energy of solvation -38.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds