Wall clock time and date at job start Sat Apr 11 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.64435 * 2 1 4 4 C 1.54323 * 110.71807 * 123.14173 * 2 1 3 5 5 N 1.47021 * 107.27097 * 140.55956 * 4 2 1 6 6 C 1.34776 * 125.65152 * 181.02452 * 5 4 2 7 7 O 1.21280 * 120.00458 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99564 * 0.02562 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47429 * 108.70411 * 1.28716 * 5 4 2 19 19 C 1.55132 * 104.72037 * 335.55463 * 18 5 4 20 20 H 1.09008 * 111.19070 * 279.19058 * 19 18 5 21 21 N 1.46896 * 110.93855 * 155.29226 * 19 18 5 22 22 C 1.46891 * 111.00413 * 92.95661 * 21 19 18 23 23 C 1.50701 * 109.47256 * 179.97438 * 22 21 19 24 24 N 1.33319 * 126.54941 * 269.68747 * 23 22 21 25 25 N 1.28997 * 107.34989 * 179.83712 * 24 23 22 26 26 N 1.28779 * 108.72678 * 0.43078 * 25 24 23 27 27 C 1.46506 * 125.44234 * 179.72813 * 26 25 24 28 28 N 1.28877 * 109.10514 * 359.72929 * 26 25 24 29 29 H 1.08994 * 109.47714 * 298.31125 * 1 2 3 30 30 H 1.09010 * 109.46725 * 58.31403 * 1 2 3 31 31 H 1.09001 * 109.46858 * 178.30515 * 1 2 3 32 32 H 1.09002 * 109.88568 * 21.14211 * 4 2 1 33 33 H 1.09003 * 110.01439 * 260.04626 * 4 2 1 34 34 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 35 35 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 36 36 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 37 37 H 1.08997 * 110.36443 * 94.48240 * 18 5 4 38 38 H 1.09001 * 110.36590 * 216.81013 * 18 5 4 39 39 H 1.00900 * 111.00070 * 328.99772 * 21 19 18 40 40 H 1.09006 * 109.47151 * 300.00154 * 22 21 19 41 41 H 1.08998 * 109.47522 * 59.99690 * 22 21 19 42 42 H 1.09001 * 109.46817 * 269.99930 * 27 26 25 43 43 H 1.08995 * 109.47494 * 30.00339 * 27 26 25 44 44 H 1.09007 * 109.46397 * 150.00396 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2445 -1.5494 0.7417 6 6 3.9923 -2.3810 1.4938 7 8 4.9384 -2.9585 1.0015 8 6 3.6527 -2.5934 2.9467 9 16 4.8325 -3.7549 3.6784 10 6 4.2179 -3.8163 5.3286 11 1 3.3528 -3.2318 5.6047 12 6 4.8457 -4.6160 6.2736 13 7 5.8998 -5.3287 5.9370 14 14 4.1937 -4.6817 8.0229 15 1 3.0080 -3.7957 8.1429 16 1 5.2494 -4.2249 8.9621 17 1 3.8058 -6.0762 8.3546 18 6 3.4666 -1.2466 -0.6839 19 6 2.0790 -0.7974 -1.2124 20 1 1.4452 -1.6560 -1.4347 21 7 2.2211 0.0677 -2.3911 22 6 2.1552 -0.7168 -3.6311 23 6 2.3037 0.2026 -4.8159 24 7 1.3193 0.8171 -5.4723 25 7 1.8606 1.5116 -6.4150 26 7 3.1366 1.3433 -6.3722 27 6 4.1058 1.9593 -7.2820 28 7 3.4246 0.5464 -5.4011 29 1 -0.3634 0.4873 0.9047 30 1 -0.3633 0.5399 -0.8746 31 1 -0.3633 -1.0272 -0.0304 32 1 1.3129 -1.4732 1.5801 33 1 2.3735 -0.1010 1.9999 34 1 2.6445 -2.9992 3.0287 35 1 3.7055 -1.6415 3.4750 36 1 6.2382 -5.2949 5.0285 37 1 4.1947 -0.4427 -0.7920 38 1 3.8032 -2.1382 -1.2131 39 1 3.0757 0.6023 -2.3463 40 1 2.9594 -1.4527 -3.6387 41 1 1.1943 -1.2284 -3.6869 42 1 4.2614 1.3081 -8.1421 43 1 3.7252 2.9231 -7.6200 44 1 5.0519 2.1048 -6.7605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274173388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:45 Heat of formation + Delta-G solvation = 67.462320 kcal Electronic energy + Delta-G solvation = -26199.413212 eV Core-core repulsion = 22315.048523 eV Total energy + Delta-G solvation = -3884.364689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.37926 -41.30209 -39.26363 -36.92283 -35.77337 -34.75776 -34.27895 -33.39006 -31.68062 -30.17208 -28.83838 -27.30855 -27.14570 -26.60802 -24.09848 -23.61926 -22.99195 -21.43583 -20.91479 -20.13407 -18.56463 -18.53099 -18.13454 -17.67090 -17.17914 -16.59899 -16.32916 -15.85791 -15.82410 -15.61433 -15.04746 -14.90964 -14.72988 -14.58104 -14.28403 -14.22528 -14.13878 -13.87340 -13.77308 -13.62379 -13.50511 -13.17687 -12.98519 -12.90311 -12.76099 -12.17522 -12.04442 -12.00265 -11.92938 -11.92446 -11.68058 -11.56933 -11.19655 -11.12136 -11.09063 -10.33833 -9.85740 -9.56680 -8.93522 -8.89208 -6.29090 0.15365 0.98299 1.11244 1.13385 1.42918 1.51425 1.62164 1.78437 1.94412 2.32651 2.70403 3.01841 3.03859 3.15205 3.23880 3.40528 3.52532 3.76693 3.88420 4.06192 4.08624 4.16721 4.22147 4.23505 4.29627 4.31285 4.44149 4.52787 4.55290 4.66287 4.69295 4.70992 4.75757 4.78781 4.89146 5.10455 5.18097 5.19920 5.30567 5.48412 5.64409 5.77687 6.12453 6.14064 6.26503 6.97738 7.05517 7.28853 8.49999 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027357 B = 0.001840 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.241376 B =15216.598710 C =16007.890183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 H 0.096 0.904 4 C 0.093 3.907 5 N -0.611 5.611 6 C 0.545 3.455 7 O -0.567 6.567 8 C -0.100 4.100 9 S -0.196 6.196 10 C -0.612 4.612 11 H 0.075 0.925 12 C -0.019 4.019 13 N -0.913 5.913 14 Si 1.142 2.858 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.274 1.274 18 C 0.077 3.923 19 C 0.097 3.903 20 H 0.109 0.891 21 N -0.660 5.660 22 C 0.157 3.843 23 C 0.166 3.834 24 N -0.297 5.297 25 N -0.082 5.082 26 N -0.128 5.128 27 C 0.078 3.922 28 N -0.316 5.316 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.349 0.651 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.133 0.867 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.097 18.464 -24.803 32.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 H 0.114 0.886 4 C -0.029 4.029 5 N -0.346 5.346 6 C 0.333 3.667 7 O -0.446 6.446 8 C -0.251 4.251 9 S 0.031 5.969 10 C -0.760 4.760 11 H 0.094 0.906 12 C -0.222 4.222 13 N -0.549 5.549 14 Si 0.960 3.040 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.200 1.200 18 C -0.048 4.048 19 C -0.014 4.014 20 H 0.127 0.873 21 N -0.292 5.292 22 C 0.025 3.975 23 C -0.117 4.117 24 N -0.168 5.168 25 N -0.075 5.075 26 N -0.043 5.043 27 C -0.060 4.060 28 N -0.169 5.169 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.169 0.831 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.152 0.848 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.238 17.518 -24.633 31.913 hybrid contribution 0.279 0.426 -0.677 0.847 sum -9.959 17.944 -25.310 32.584 Atomic orbital electron populations 1.21668 0.91996 1.02482 1.02874 1.22132 0.97629 0.99216 0.90686 0.88588 1.22531 0.86682 0.95108 0.98567 1.48245 1.30738 1.44218 1.11374 1.19730 0.81534 0.78044 0.87356 1.90689 1.30324 1.49565 1.74019 1.23151 1.03712 1.03671 0.94590 1.85058 1.42480 1.58443 1.10901 1.24074 1.20334 1.36012 0.95548 0.90640 1.27852 0.93766 0.91130 1.09461 1.70861 1.23203 1.39357 1.21454 0.82649 0.75886 0.77503 0.67981 1.18626 1.19998 1.19956 1.23181 0.99630 1.01001 0.80958 1.22835 0.93358 0.95542 0.89702 0.87332 1.60488 1.43912 1.25124 0.99648 1.20245 1.04703 0.90546 0.81968 1.25680 0.84169 1.01302 1.00539 1.75822 1.27633 1.09239 1.04070 1.78933 0.92672 1.18404 1.17486 1.50544 1.06610 1.27110 1.20011 1.23029 0.90348 1.00852 0.91762 1.74695 1.27677 1.11215 1.03275 0.91566 0.91292 0.92303 0.90008 0.90305 0.87238 0.87402 0.92837 0.90974 0.91682 0.83108 0.90969 0.86447 0.85972 0.84837 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.13 71.98 0.66 -0.84 16 2 C -0.08 -1.04 3.24 -9.61 -0.03 -1.07 16 3 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.09 1.74 6.08 86.73 0.53 2.26 16 5 N -0.61 -16.41 3.32 -811.33 -2.70 -19.11 16 6 C 0.55 20.92 7.87 87.66 0.69 21.61 16 7 O -0.57 -26.94 16.12 -3.03 -0.05 -26.99 16 8 C -0.10 -4.07 5.35 71.24 0.38 -3.69 16 9 S -0.20 -10.91 19.60 -56.49 -1.11 -12.02 16 10 C -0.61 -35.49 9.50 67.95 0.65 -34.84 16 11 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 12 C -0.02 -1.11 5.49 84.86 0.47 -0.64 16 13 N -0.91 -58.25 13.67 21.65 0.30 -57.95 16 14 Si 1.14 49.49 29.92 68.60 2.05 51.54 16 15 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 C 0.08 1.64 6.51 86.93 0.57 2.21 16 19 C 0.10 1.39 2.84 46.39 0.13 1.52 16 20 H 0.11 1.47 7.72 -2.38 -0.02 1.45 16 21 N -0.66 -8.90 6.40 -488.02 -3.12 -12.02 16 22 C 0.16 2.16 6.17 85.56 0.53 2.69 16 23 C 0.17 3.03 7.88 138.55 1.09 4.12 16 24 N -0.30 -6.43 12.50 -51.26 -0.64 -7.07 16 25 N -0.08 -1.56 13.25 37.02 0.49 -1.07 16 26 N -0.13 -1.80 4.40 -206.71 -0.91 -2.70 16 27 C 0.08 0.13 11.63 127.77 1.49 1.62 16 28 N -0.32 -5.46 12.13 -51.20 -0.62 -6.08 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 32 H 0.08 1.43 7.82 -2.39 -0.02 1.42 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 35 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 36 H 0.26 17.32 7.13 -92.70 -0.66 16.66 16 37 H 0.07 1.48 7.76 -2.39 -0.02 1.46 16 38 H 0.06 1.59 8.03 -2.39 -0.02 1.57 16 39 H 0.35 4.74 8.18 -89.69 -0.73 4.01 16 40 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.12 1.41 8.09 -2.39 -0.02 1.39 16 42 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.13 -0.14 8.14 -2.38 -0.02 -0.16 16 Total: -1.00 -85.74 386.40 1.23 -84.51 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.40 Total: 14.03 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 7.14 Total: -5.06 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -7.21 Total: -106.01 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.05 Total: -26.99 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.05 Total: 51.54 kcal Atomic # 16 Polarization: -10.91 SS G_CDS: -1.11 Total: -12.02 kcal Total: -85.74 1.23 -84.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.976 kcal (2) G-P(sol) polarization free energy of solvation -85.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds