Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.29137 * 2 1 4 4 C 1.54002 * 110.33052 * 237.86079 * 2 1 3 5 5 N 1.47481 * 107.08514 * 239.80352 * 4 2 1 6 6 C 1.34783 * 127.03437 * 205.47901 * 5 4 2 7 7 O 1.21280 * 120.00062 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.99611 * 359.97438 * 6 5 4 9 9 S 1.81001 * 109.46811 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99952 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00117 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99975 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00061 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00152 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.46882 * 89.99705 * 14 12 10 16 16 H 1.48498 * 109.47365 * 209.99853 * 14 12 10 17 17 H 1.48498 * 109.46855 * 330.00014 * 14 12 10 18 18 C 1.48117 * 105.93341 * 25.44433 * 5 4 2 19 19 C 1.54617 * 110.32738 * 122.24063 * 2 1 3 20 20 H 1.09004 * 110.74024 * 215.38668 * 19 2 1 21 21 N 1.46907 * 110.73814 * 338.70296 * 19 2 1 22 22 C 1.46896 * 111.00215 * 204.99807 * 21 19 2 23 23 C 1.50698 * 109.47275 * 180.02562 * 22 21 19 24 24 N 1.33313 * 126.54563 * 90.03080 * 23 22 21 25 25 N 1.29004 * 107.35194 * 180.02562 * 24 23 22 26 26 N 1.28783 * 108.72693 * 359.97438 * 25 24 23 27 27 C 1.46494 * 125.44867 * 180.02562 * 26 25 24 28 28 N 1.28890 * 109.09809 * 359.72979 * 26 25 24 29 29 H 1.09002 * 109.47153 * 180.68380 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.68571 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.68552 * 1 2 3 32 32 H 1.08997 * 109.90917 * 359.16507 * 4 2 1 33 33 H 1.08998 * 109.91232 * 120.24930 * 4 2 1 34 34 H 1.08995 * 109.47547 * 299.99953 * 8 6 5 35 35 H 1.09001 * 109.46964 * 60.00234 * 8 6 5 36 36 H 0.97002 * 120.00069 * 179.97438 * 13 12 10 37 37 H 1.08998 * 110.65813 * 79.14959 * 18 5 4 38 38 H 1.08998 * 110.66335 * 202.26765 * 18 5 4 39 39 H 1.00903 * 110.99650 * 81.05001 * 21 19 2 40 40 H 1.08998 * 109.47373 * 300.00872 * 22 21 19 41 41 H 1.09010 * 109.46984 * 60.00198 * 22 21 19 42 42 H 1.08996 * 109.46890 * 89.97927 * 27 26 25 43 43 H 1.09004 * 109.46777 * 209.97597 * 27 26 25 44 44 H 1.09000 * 109.47150 * 329.97249 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8804 -1.8850 -0.7100 6 6 3.8924 -2.5095 -1.3446 7 8 4.4805 -3.4194 -0.7994 8 6 4.2930 -2.0772 -2.7315 9 16 5.6714 -3.0992 -3.3074 10 6 5.9271 -2.3970 -4.9031 11 1 5.3064 -1.5796 -5.2392 12 6 6.9268 -2.8938 -5.7278 13 7 7.1175 -2.3696 -6.9201 14 14 8.0009 -4.3072 -5.1464 15 1 7.3785 -5.5966 -5.5407 16 1 9.3450 -4.1958 -5.7679 17 1 8.1330 -4.2529 -3.6683 18 6 2.3604 -2.1795 0.6452 19 6 2.0671 -0.7735 1.2263 20 1 2.9805 -0.3133 1.6032 21 7 1.0475 -0.8489 2.2812 22 6 1.6677 -1.0209 3.6017 23 6 0.5932 -1.0946 4.6557 24 7 -0.0155 -2.1970 5.0930 25 7 -0.8677 -1.8353 5.9915 26 7 -0.8087 -0.5559 6.1260 27 6 -1.6204 0.2395 7.0505 28 7 0.0830 -0.0879 5.3216 29 1 -0.3633 -1.0276 0.0123 30 1 -0.3633 0.5032 -0.8961 31 1 -0.3634 0.5245 0.8838 32 1 1.2331 -1.1554 -1.8110 33 1 2.6781 -0.1084 -1.8366 34 1 3.4461 -2.1943 -3.4075 35 1 4.6001 -1.0315 -2.7116 36 1 7.8165 -2.7165 -7.4963 37 1 1.4460 -2.7697 0.5864 38 1 3.1133 -2.6932 1.2429 39 1 0.3866 -1.5878 2.0932 40 1 2.2504 -1.9420 3.6122 41 1 2.3227 -0.1743 3.8085 42 1 -1.1025 0.3269 8.0056 43 1 -1.7799 1.2330 6.6313 44 1 -2.5826 -0.2496 7.2022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274173390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = 80.002252 kcal Electronic energy + Delta-G solvation = -26312.428403 eV Core-core repulsion = 22428.607486 eV Total energy + Delta-G solvation = -3883.820916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.34979 -41.26039 -39.29197 -36.86218 -35.71317 -34.67678 -34.24932 -33.16195 -31.53719 -30.08945 -28.77397 -27.86445 -27.26083 -26.62449 -24.27314 -23.94238 -23.12311 -20.86979 -20.61132 -19.61583 -18.52212 -18.45831 -18.17643 -17.39848 -17.18969 -17.10924 -16.36354 -16.02388 -15.76655 -15.32590 -15.20257 -15.09608 -14.89395 -14.49834 -14.33093 -14.11066 -14.09777 -13.69352 -13.62949 -13.37377 -13.32745 -13.30294 -13.01827 -12.97821 -12.75437 -12.64805 -12.16087 -12.02159 -11.97625 -11.87434 -11.68554 -11.51639 -11.17606 -11.17408 -11.01677 -10.54794 -9.91815 -9.47707 -9.01382 -8.51768 -6.23165 0.18907 0.94081 1.01952 1.14911 1.31144 1.44582 1.49010 1.52515 2.00377 2.24776 2.66447 2.75527 2.86435 3.15530 3.27519 3.47675 3.63417 3.82565 3.94905 4.05840 4.16627 4.19275 4.25556 4.27890 4.32995 4.40215 4.51517 4.56500 4.61500 4.70962 4.71976 4.74945 4.79427 4.82320 4.94577 5.12173 5.21769 5.29257 5.34652 5.58119 5.70566 5.81281 6.11064 6.17609 6.35940 6.93316 7.02784 7.30954 8.60502 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031306 B = 0.001871 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.185679 B =14963.797096 C =15591.773760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 H 0.101 0.899 4 C 0.093 3.907 5 N -0.615 5.615 6 C 0.552 3.448 7 O -0.565 6.565 8 C -0.102 4.102 9 S -0.176 6.176 10 C -0.529 4.529 11 H 0.063 0.937 12 C 0.048 3.952 13 N -0.915 5.915 14 Si 0.913 3.087 15 H -0.263 1.263 16 H -0.258 1.258 17 H -0.238 1.238 18 C 0.076 3.924 19 C 0.093 3.907 20 H 0.102 0.898 21 N -0.657 5.657 22 C 0.155 3.845 23 C 0.166 3.834 24 N -0.312 5.312 25 N -0.083 5.083 26 N -0.129 5.129 27 C 0.078 3.922 28 N -0.300 5.300 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.277 0.723 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.350 0.650 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.112 10.710 28.048 36.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.102 4.102 3 H 0.119 0.881 4 C -0.029 4.029 5 N -0.350 5.350 6 C 0.340 3.660 7 O -0.443 6.443 8 C -0.253 4.253 9 S 0.051 5.949 10 C -0.676 4.676 11 H 0.081 0.919 12 C -0.158 4.158 13 N -0.553 5.553 14 Si 0.735 3.265 15 H -0.188 1.188 16 H -0.182 1.182 17 H -0.162 1.162 18 C -0.048 4.048 19 C -0.018 4.018 20 H 0.120 0.880 21 N -0.289 5.289 22 C 0.024 3.976 23 C -0.117 4.117 24 N -0.183 5.183 25 N -0.076 5.076 26 N -0.043 5.043 27 C -0.060 4.060 28 N -0.153 5.153 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.170 0.830 40 H 0.089 0.911 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.640 9.784 29.162 37.043 hybrid contribution 0.492 -0.292 -1.380 1.493 sum -20.148 9.492 27.782 35.608 Atomic orbital electron populations 1.21598 0.92628 1.01797 1.02456 1.22018 0.97665 0.99547 0.90997 0.88077 1.22606 0.94892 0.87547 0.97887 1.48538 1.32686 1.35678 1.18055 1.19628 0.78616 0.81308 0.86468 1.90689 1.54443 1.31156 1.68051 1.23196 1.01777 1.04219 0.96088 1.84724 1.42303 1.49489 1.18388 1.22438 1.22423 1.22228 1.00548 0.91868 1.25533 0.97385 0.98808 0.94076 1.70013 1.33324 1.42780 1.09185 0.85889 0.79408 0.79841 0.81368 1.18759 1.18188 1.16155 1.23345 0.99365 0.99192 0.82928 1.22605 0.94842 0.93046 0.91317 0.87997 1.60592 1.16269 1.52422 0.99626 1.20240 0.89753 1.03879 0.83777 1.25681 1.01178 0.84339 1.00511 1.75834 1.07107 1.26795 1.08522 1.78917 1.17504 0.96689 1.14496 1.50602 1.23470 1.04890 1.25345 1.23028 0.95296 0.96466 0.91179 1.74703 1.06065 1.27698 1.06830 0.93301 0.92170 0.90964 0.90107 0.89838 0.87272 0.86943 0.91341 0.90094 0.91201 0.82999 0.91139 0.86593 0.85986 0.85269 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.05 71.98 0.58 -0.86 16 2 C -0.08 -1.07 3.57 -9.91 -0.04 -1.11 16 3 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 4 C 0.09 1.66 6.42 86.53 0.56 2.22 16 5 N -0.62 -15.73 3.29 -809.42 -2.66 -18.40 16 6 C 0.55 19.97 7.91 87.66 0.69 20.67 16 7 O -0.56 -25.14 16.07 -3.03 -0.05 -25.19 16 8 C -0.10 -3.97 5.24 71.24 0.37 -3.59 16 9 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 10 C -0.53 -30.97 10.04 67.95 0.68 -30.29 16 11 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 12 C 0.05 2.80 5.50 84.86 0.47 3.27 16 13 N -0.92 -55.75 13.97 21.65 0.30 -55.45 16 14 Si 0.91 45.28 27.74 68.60 1.90 47.18 16 15 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 18 C 0.08 1.54 6.66 86.73 0.58 2.12 16 19 C 0.09 1.31 3.27 46.13 0.15 1.46 16 20 H 0.10 1.41 7.83 -2.39 -0.02 1.40 16 21 N -0.66 -8.33 4.88 -489.31 -2.39 -10.72 16 22 C 0.16 2.08 6.17 85.56 0.53 2.61 16 23 C 0.17 2.94 7.88 138.55 1.09 4.03 16 24 N -0.31 -6.68 12.50 -51.27 -0.64 -7.32 16 25 N -0.08 -1.56 13.25 37.02 0.49 -1.07 16 26 N -0.13 -1.70 4.40 -206.74 -0.91 -2.61 16 27 C 0.08 0.06 11.63 127.77 1.49 1.54 16 28 N -0.30 -4.95 12.13 -51.21 -0.62 -5.57 16 29 H 0.05 0.58 7.89 -2.39 -0.02 0.57 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.87 7.58 -2.38 -0.02 0.85 16 32 H 0.08 1.34 7.68 -2.39 -0.02 1.32 16 33 H 0.08 1.47 7.55 -2.39 -0.02 1.45 16 34 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 35 H 0.11 4.02 7.92 -2.39 -0.02 4.00 16 36 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.08 1.49 7.77 -2.39 -0.02 1.47 16 38 H 0.07 1.66 7.85 -2.39 -0.02 1.64 16 39 H 0.35 4.64 7.70 -89.69 -0.69 3.95 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.12 1.29 8.08 -2.38 -0.02 1.27 16 42 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.13 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: -1.00 -81.33 381.27 1.82 -79.51 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.30 Total: 7.65 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 7.15 Total: 2.06 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -6.43 Total: -101.14 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -81.33 1.82 -79.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.508 kcal (2) G-P(sol) polarization free energy of solvation -81.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds