Wall clock time and date at job start Sat Apr 11 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47383 * 2 1 4 4 N 1.39931 * 125.75262 * 270.00098 * 3 2 1 5 5 C 1.30415 * 108.95891 * 179.70727 * 4 3 2 6 6 C 1.50700 * 125.97188 * 180.26052 * 5 4 3 7 7 C 1.41334 * 108.04823 * 0.44513 * 5 4 3 8 8 C 1.47304 * 126.43116 * 179.81201 * 7 5 4 9 9 O 1.21622 * 120.00167 * 269.71545 * 8 7 5 10 10 N 1.34774 * 119.99712 * 89.72101 * 8 7 5 11 11 C 1.46504 * 120.00137 * 179.97438 * 10 8 7 12 12 C 1.53772 * 113.61745 * 204.99848 * 11 10 8 13 13 C 1.53774 * 87.08320 * 219.93339 * 12 11 10 14 14 C 1.53002 * 113.61618 * 139.97788 * 13 12 11 15 15 N 1.46506 * 109.47035 * 176.52887 * 14 13 12 16 16 C 1.36938 * 119.99589 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00325 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99821 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99700 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00122 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47389 * 59.99599 * 20 18 16 22 22 H 1.48505 * 109.47237 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46896 * 299.99625 * 20 18 16 24 24 C 1.53784 * 87.17212 * 25.39034 * 13 12 11 25 25 C 1.34351 * 125.74909 * 89.99732 * 3 2 1 26 26 Cl 1.73602 * 126.31968 * 359.97438 * 25 3 2 27 27 H 1.09000 * 109.46701 * 60.00291 * 1 2 3 28 28 H 1.08994 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47457 * 300.00052 * 1 2 3 30 30 H 1.08996 * 109.47457 * 239.99948 * 2 1 3 31 31 H 1.09006 * 109.47093 * 119.99867 * 2 1 3 32 32 H 1.09002 * 109.47305 * 270.21832 * 6 5 4 33 33 H 1.09005 * 109.47282 * 30.21962 * 6 5 4 34 34 H 1.08998 * 109.46773 * 150.21683 * 6 5 4 35 35 H 0.96995 * 120.00214 * 359.97438 * 10 8 7 36 36 H 1.09001 * 112.84520 * 336.19440 * 11 10 8 37 37 H 1.09001 * 113.61872 * 105.37999 * 12 11 10 38 38 H 1.09003 * 113.69209 * 334.49590 * 12 11 10 39 39 H 1.08999 * 113.61920 * 270.79910 * 13 12 11 40 40 H 1.09004 * 109.46930 * 56.53117 * 14 13 12 41 41 H 1.09000 * 109.47312 * 296.53061 * 14 13 12 42 42 H 0.96999 * 120.00080 * 0.02562 * 15 14 13 43 43 H 0.97000 * 119.99481 * 179.97438 * 19 18 16 44 44 H 1.08998 * 113.61528 * 89.16153 * 24 13 12 45 45 H 1.09002 * 113.61529 * 220.06258 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2909 2.1520 -1.1356 5 6 2.7012 3.3312 -0.7588 6 6 3.0938 4.4649 -1.6707 7 6 2.7173 3.3584 0.6542 8 6 3.1187 4.4935 1.5028 9 8 4.2775 4.6113 1.8527 10 7 2.2017 5.4016 1.8914 11 6 2.6007 6.5303 2.7359 12 6 1.4503 7.1068 3.5777 13 6 2.0227 8.4990 3.2638 14 6 0.9505 9.5526 2.9786 15 7 1.5883 10.8555 2.7740 16 6 0.8224 11.9576 2.5019 17 1 -0.2519 11.8663 2.4386 18 6 1.4267 13.1920 2.3076 19 7 2.7359 13.3033 2.3853 20 14 0.3819 14.6955 1.9372 21 1 -0.5622 14.9309 3.0590 22 1 1.2610 15.8812 1.7736 23 1 -0.3838 14.4698 0.6849 24 6 2.6303 7.8792 1.9943 25 6 2.2800 2.1212 1.0904 26 17 2.1012 1.6175 2.7421 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.1584 4.3988 -1.8951 33 1 2.5226 4.4009 -2.5968 34 1 2.8844 5.4153 -1.1797 35 1 1.2776 5.3078 1.6121 36 1 3.5047 6.3298 3.3109 37 1 1.5052 6.8399 4.6331 38 1 0.4636 6.9333 3.1482 39 1 2.7676 8.8375 3.9840 40 1 0.2656 9.6121 3.8245 41 1 0.3970 9.2742 2.0818 42 1 2.5532 10.9374 2.8305 43 1 3.1582 14.1659 2.2491 44 1 1.9676 7.9168 1.1298 45 1 3.6366 8.2350 1.7732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275323222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:41 Heat of formation + Delta-G solvation = 58.384273 kcal Electronic energy + Delta-G solvation = -26594.091676 eV Core-core repulsion = 22674.996876 eV Total energy + Delta-G solvation = -3919.094800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.87722 -39.84274 -38.13646 -37.44025 -35.37585 -34.50373 -33.21195 -31.80102 -30.95682 -30.29019 -28.14129 -26.76261 -25.46329 -24.64065 -23.32631 -22.43306 -21.25013 -20.75671 -20.25936 -19.35783 -17.98752 -17.05766 -16.84621 -16.25073 -15.86012 -15.51992 -15.05757 -14.95734 -14.51128 -14.34461 -14.10625 -13.74344 -13.51368 -13.22787 -13.08937 -13.08454 -12.89615 -12.80222 -12.68117 -12.24782 -12.21510 -12.06850 -11.87220 -11.78633 -11.58187 -11.14037 -11.10338 -10.82742 -10.69714 -10.33745 -10.09390 -10.01774 -9.80966 -9.67396 -9.58781 -9.03672 -8.94755 -8.80538 -6.86479 -5.71904 -3.00214 0.87001 1.02701 1.96529 2.01733 2.44917 3.22375 3.46604 3.50713 3.52058 3.87451 4.29002 4.34313 4.57000 4.60509 4.61518 4.66804 4.83288 4.87380 4.98612 5.01693 5.09618 5.10898 5.17297 5.35120 5.45677 5.47924 5.56336 5.61520 5.77798 5.88651 5.95983 5.99533 6.10147 6.14057 6.15827 6.28817 6.35036 6.46792 6.66810 6.82602 6.96959 7.05895 7.48046 7.72868 8.16805 8.47288 9.58053 10.17667 10.52189 11.50924 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.002074 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.602225 B =13499.750979 C =13847.301789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.120 3.880 3 N -0.350 5.350 4 N -0.272 5.272 5 C 0.123 3.877 6 C -0.080 4.080 7 C -0.257 4.257 8 C 0.597 3.403 9 O -0.528 6.528 10 N -0.706 5.706 11 C 0.118 3.882 12 C -0.137 4.137 13 C -0.111 4.111 14 C 0.166 3.834 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.137 4.137 25 C 0.158 3.842 26 Cl 0.011 6.989 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.401 0.599 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.084 0.916 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -31.104 -3.965 31.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.132 5.132 4 N -0.095 5.095 5 C -0.044 4.044 6 C -0.138 4.138 7 C -0.273 4.273 8 C 0.381 3.619 9 O -0.404 6.404 10 N -0.356 5.356 11 C 0.014 3.986 12 C -0.176 4.176 13 C -0.130 4.130 14 C 0.038 3.962 15 N -0.376 5.376 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.176 4.176 25 C 0.001 3.999 26 Cl 0.039 6.961 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.235 0.765 36 H 0.132 0.868 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.156 -31.866 -4.571 32.346 hybrid contribution -0.591 1.121 0.584 1.395 sum -3.747 -30.745 -3.988 31.228 Atomic orbital electron populations 1.22194 0.93379 1.03668 1.03655 1.21913 0.95963 0.76856 1.05274 1.48614 1.50073 1.12599 1.01932 1.77291 1.23258 1.03859 1.05112 1.22344 0.96230 0.94201 0.91613 1.20343 1.02792 0.93080 0.97631 1.19851 1.18283 0.94987 0.94218 1.17126 0.85281 0.80787 0.78736 1.90809 1.18419 1.75687 1.55440 1.46039 1.11768 1.25855 1.51889 1.22754 0.99223 0.84020 0.92652 1.23327 0.97965 0.96289 0.99980 1.22528 0.99091 0.93696 0.97697 1.20596 0.93030 0.85529 0.97048 1.42346 1.06649 1.02810 1.85776 1.19186 0.90682 0.87034 1.40149 0.91341 1.24746 0.95700 0.97713 1.02955 1.69656 1.07722 1.24102 1.56713 0.86269 0.79076 0.82741 0.78107 1.21328 1.21710 1.21322 1.23472 1.02154 0.94060 0.97920 1.21940 1.02231 0.91972 0.83731 1.98442 1.95960 1.90948 1.10710 0.91168 0.89905 0.91720 0.87671 0.88481 0.89467 0.89895 0.89674 0.76495 0.86829 0.91016 0.89698 0.88870 0.96418 0.96392 0.78226 0.93499 0.89727 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.24 37.16 0.38 -0.35 16 2 C 0.12 0.64 6.97 -4.04 -0.03 0.61 16 3 N -0.35 -3.22 3.58 -57.57 -0.21 -3.43 16 4 N -0.27 -2.96 12.49 33.90 0.42 -2.54 16 5 C 0.12 1.35 7.26 -82.02 -0.60 0.75 16 6 C -0.08 -0.71 10.28 36.01 0.37 -0.34 16 7 C -0.26 -3.03 5.88 -105.02 -0.62 -3.65 16 8 C 0.60 7.95 7.20 -12.58 -0.09 7.86 16 9 O -0.53 -9.04 16.71 5.26 0.09 -8.95 16 10 N -0.71 -8.05 5.36 -54.04 -0.29 -8.34 16 11 C 0.12 1.49 4.24 -67.03 -0.28 1.20 16 12 C -0.14 -1.65 7.39 -25.93 -0.19 -1.84 16 13 C -0.11 -1.73 3.75 -89.81 -0.34 -2.07 16 14 C 0.17 3.28 6.08 -4.04 -0.02 3.26 16 15 N -0.73 -18.67 5.60 -59.90 -0.34 -19.01 16 16 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.14 -2.02 7.45 -25.83 -0.19 -2.21 16 25 C 0.16 1.63 7.54 -16.43 -0.12 1.50 16 26 Cl 0.01 0.10 28.56 -51.86 -1.48 -1.38 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.38 7.77 -51.93 -0.40 -0.02 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 35 H 0.40 3.73 8.71 -40.82 -0.36 3.37 16 36 H 0.11 1.58 7.46 -51.93 -0.39 1.19 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.36 7.87 -51.93 -0.41 -0.05 16 42 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -34.61 397.06 -8.99 -43.60 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.89 Total: 7.04 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.98 Total: -2.71 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.32 Total: -61.14 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.48 Total: -1.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.61 -8.99 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275323222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.981 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds