Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35355 * 116.99968 * 2 1 4 4 N 1.30548 * 125.44456 * 179.97438 * 3 2 1 5 5 C 1.36328 * 108.38077 * 180.02562 * 4 3 2 6 6 C 1.47366 * 126.41270 * 180.02562 * 5 4 3 7 7 O 1.21627 * 120.00239 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00241 * 0.02562 * 6 5 4 9 9 C 1.46506 * 120.00614 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46379 * 324.99979 * 9 8 6 11 11 C 1.53002 * 109.47040 * 84.99628 * 9 8 6 12 12 C 1.52999 * 109.47075 * 205.00168 * 9 8 6 13 13 H 1.08996 * 109.46929 * 299.99044 * 12 9 8 14 14 C 1.52997 * 109.47317 * 59.99940 * 12 9 8 15 15 N 1.46906 * 109.46507 * 179.97438 * 12 9 8 16 16 C 1.46904 * 110.99716 * 154.99875 * 15 12 9 17 17 C 1.50700 * 109.47105 * 179.97438 * 16 15 12 18 18 O 1.21294 * 119.99799 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99763 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99668 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99955 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00105 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99749 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00210 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47135 * 59.99583 * 24 22 20 26 26 H 1.48503 * 109.47208 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46889 * 299.99762 * 24 22 20 28 28 C 1.35911 * 107.17715 * 0.26264 * 5 4 3 29 29 O 1.34200 * 125.44388 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.46905 * 59.99993 * 1 2 3 31 31 H 1.09002 * 109.47158 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47377 * 299.99988 * 1 2 3 33 33 H 0.97000 * 119.99625 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47142 * 300.00370 * 11 9 8 35 35 H 1.08996 * 109.46698 * 60.00424 * 11 9 8 36 36 H 1.09002 * 109.46838 * 179.97438 * 11 9 8 37 37 H 1.09002 * 109.47153 * 299.99641 * 14 12 9 38 38 H 1.09001 * 109.46832 * 179.97438 * 14 12 9 39 39 H 1.09004 * 109.47261 * 59.99813 * 14 12 9 40 40 H 1.00900 * 110.99634 * 278.94600 * 15 12 9 41 41 H 1.08996 * 109.46868 * 300.00084 * 16 15 12 42 42 H 1.09007 * 109.46973 * 59.99616 * 16 15 12 43 43 H 0.96997 * 120.00718 * 0.02562 * 19 17 16 44 44 H 0.96993 * 119.99702 * 180.02562 * 23 22 20 45 45 H 1.08001 * 126.46124 * 179.73420 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5700 2.7406 0.0009 6 6 4.8891 3.3976 0.0009 7 8 4.9639 4.6116 0.0018 8 7 6.0127 2.6533 0.0001 9 6 7.3242 3.3064 0.0007 10 1 7.2740 4.2225 -0.5878 11 6 7.7247 3.6448 1.4381 12 6 8.3634 2.3642 -0.6101 13 1 8.4136 1.4481 -0.0215 14 6 7.9628 2.0259 -2.0474 15 7 9.6782 3.0194 -0.6099 16 6 10.7611 2.0267 -0.6111 17 6 12.0915 2.7345 -0.6115 18 8 12.1335 3.9467 -0.6105 19 7 13.2346 2.0205 -0.6120 20 6 14.4449 2.6645 -0.6119 21 1 14.4823 3.7438 -0.6110 22 6 15.6235 1.9285 -0.6130 23 7 15.5780 0.6152 -0.6136 24 14 17.2726 2.8059 -0.6121 25 1 17.3810 3.6550 0.6014 26 1 18.3673 1.8024 -0.6129 27 1 17.3806 3.6579 -1.8237 28 6 2.3603 3.3600 0.0066 29 8 1.4227 2.3958 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 5.9531 1.6852 -0.0010 34 1 6.9842 4.3161 1.8731 35 1 7.7747 2.7287 2.0265 36 1 8.7006 4.1303 1.4385 37 1 6.9872 1.5399 -2.0479 38 1 8.7035 1.3549 -2.4826 39 1 7.9127 2.9420 -2.6359 40 1 9.7670 3.6521 -1.3909 41 1 10.6819 1.4017 0.2784 42 1 10.6813 1.4030 -1.5015 43 1 13.2011 1.0512 -0.6125 44 1 16.4007 0.1014 -0.6140 45 1 2.1849 4.4256 0.0124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275453500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = -76.514927 kcal Electronic energy + Delta-G solvation = -28634.643445 eV Core-core repulsion = 24268.989812 eV Total energy + Delta-G solvation = -4365.653633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.90765 -40.00887 -39.29604 -38.40840 -37.17432 -35.38972 -34.48592 -33.76932 -31.28400 -30.98108 -30.26174 -29.50136 -28.00272 -26.30270 -24.99940 -24.15000 -23.19405 -22.64348 -20.98124 -20.67202 -19.41157 -19.17108 -17.99930 -17.88513 -17.67203 -16.87961 -16.37049 -16.01092 -15.74149 -15.72126 -15.20275 -14.98120 -14.58951 -14.46976 -14.11094 -13.87939 -13.74630 -13.70182 -13.44021 -13.01189 -12.88927 -12.52282 -12.32017 -12.17487 -12.09899 -11.57395 -11.52604 -11.46309 -11.42641 -11.25243 -11.23036 -10.99293 -10.64598 -10.42346 -10.39327 -10.18814 -9.47522 -9.31050 -9.08598 -8.43647 -8.02823 -7.93192 -6.39324 -3.80071 0.68862 1.42780 1.62065 2.24709 2.85941 3.03307 3.22342 3.27800 3.32476 3.93608 4.01277 4.16951 4.27975 4.39133 4.40206 4.46599 4.63023 4.71230 4.83797 4.96984 5.04287 5.18452 5.22139 5.29441 5.31143 5.50139 5.56380 5.72047 5.74369 5.87903 5.94121 6.04336 6.08784 6.11425 6.13763 6.27758 6.40635 6.58725 6.99595 7.20358 7.37751 7.57481 7.66241 7.96838 8.08662 8.63811 9.20338 9.56893 10.08444 10.78347 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.001682 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.064033 B =16645.199697 C =17253.231401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.244 6.244 3 C 0.381 3.619 4 N -0.455 5.455 5 C -0.046 4.046 6 C 0.604 3.396 7 O -0.532 6.532 8 N -0.703 5.703 9 C 0.152 3.848 10 H 0.092 0.908 11 C -0.153 4.153 12 C 0.077 3.923 13 H 0.083 0.917 14 C -0.185 4.185 15 N -0.657 5.657 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.003 3.997 29 O -0.226 6.226 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.408 0.592 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.353 0.647 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.839 -3.428 0.511 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.152 6.152 3 C 0.135 3.865 4 N -0.201 5.201 5 C -0.165 4.165 6 C 0.389 3.611 7 O -0.409 6.409 8 N -0.353 5.353 9 C 0.048 3.952 10 H 0.110 0.890 11 C -0.211 4.211 12 C -0.034 4.034 13 H 0.101 0.899 14 C -0.244 4.244 15 N -0.289 5.289 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.069 4.069 29 O -0.117 6.117 30 H 0.087 0.913 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.173 0.827 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -31.098 -2.530 1.193 31.223 hybrid contribution -0.079 -0.693 -0.930 1.162 sum -31.176 -3.223 0.263 31.344 Atomic orbital electron populations 1.23327 0.74963 1.05798 1.03060 1.86399 1.23767 1.15805 1.89198 1.23377 0.85627 0.79580 0.97934 1.71103 1.09770 1.15673 1.23566 1.21741 0.95985 0.88349 1.10433 1.16582 0.81851 0.85977 0.76727 1.90861 1.86603 1.12613 1.50804 1.45891 1.05394 1.10808 1.73221 1.20974 0.79714 0.96218 0.98272 0.89019 1.22047 1.02994 1.01509 0.94550 1.21744 0.89718 0.96648 0.95291 0.89910 1.22545 1.01944 1.02259 0.97652 1.60001 0.99127 1.18321 1.51483 1.21692 0.91063 0.94033 1.01228 1.19801 0.84915 0.88180 0.84473 1.90531 1.87033 1.13753 1.55320 1.41851 1.04712 1.09065 1.64425 1.19660 0.81971 0.93649 1.47649 0.87962 1.25257 0.99856 0.95478 0.97337 1.69605 1.29317 1.04833 1.50610 0.85916 0.80640 0.78576 0.79070 1.19890 1.21014 1.19939 1.25001 0.84904 0.93836 1.03152 1.84399 1.39552 1.15881 1.71839 0.91334 0.86183 0.91334 0.75687 0.93038 0.93040 0.89312 0.92077 0.92178 0.92184 0.82716 0.89548 0.93757 0.77476 0.91856 0.74690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 10.73 101.05 1.08 1.14 16 2 O -0.24 -1.77 10.55 -40.99 -0.43 -2.20 16 3 C 0.38 3.42 8.98 52.22 0.47 3.89 16 4 N -0.46 -4.89 11.10 -11.72 -0.13 -5.02 16 5 C -0.05 -0.48 6.99 -82.99 -0.58 -1.06 16 6 C 0.60 7.29 7.78 -12.55 -0.10 7.19 16 7 O -0.53 -7.75 16.55 5.25 0.09 -7.66 16 8 N -0.70 -7.72 4.38 -54.89 -0.24 -7.96 16 9 C 0.15 1.86 2.34 -67.93 -0.16 1.70 16 10 H 0.09 1.27 7.58 -51.93 -0.39 0.87 16 11 C -0.15 -1.99 9.33 37.16 0.35 -1.64 16 12 C 0.08 0.93 2.22 -67.71 -0.15 0.78 16 13 H 0.08 0.94 7.80 -51.93 -0.41 0.54 16 14 C -0.19 -2.02 9.00 37.16 0.33 -1.68 16 15 N -0.66 -10.19 5.11 -107.99 -0.55 -10.74 16 16 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 17 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 18 O -0.58 -15.73 15.78 5.55 0.09 -15.64 16 19 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 24 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.00 0.03 11.93 29.90 0.36 0.38 16 29 O -0.23 -1.72 10.20 -17.77 -0.18 -1.90 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.12 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 33 H 0.41 4.00 8.11 -40.82 -0.33 3.67 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.32 7.60 -51.93 -0.39 0.92 16 37 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 38 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 39 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 40 H 0.35 5.77 8.17 -39.29 -0.32 5.45 16 41 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 42 H 0.04 0.69 7.43 -51.93 -0.39 0.30 16 43 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.24 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -34.12 391.05 -4.79 -38.92 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.21 Total: 14.58 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 1.25 Total: 13.78 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.26 Total: -61.91 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.44 Total: -27.41 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.12 -4.79 -38.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275453500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.599 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds