Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35355 * 116.99968 * 2 1 4 4 N 1.30548 * 125.44456 * 179.97438 * 3 2 1 5 5 C 1.36328 * 108.38077 * 180.02562 * 4 3 2 6 6 C 1.47366 * 126.41270 * 180.02562 * 5 4 3 7 7 O 1.21627 * 120.00239 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00241 * 0.02562 * 6 5 4 9 9 C 1.46506 * 120.00614 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46379 * 324.99979 * 9 8 6 11 11 C 1.53002 * 109.47040 * 84.99628 * 9 8 6 12 12 C 1.52999 * 109.47075 * 205.00168 * 9 8 6 13 13 H 1.08996 * 109.46929 * 299.99044 * 12 9 8 14 14 C 1.52997 * 109.47317 * 59.99940 * 12 9 8 15 15 N 1.46906 * 109.46507 * 179.97438 * 12 9 8 16 16 C 1.46904 * 110.99716 * 154.99875 * 15 12 9 17 17 C 1.50700 * 109.47105 * 179.97438 * 16 15 12 18 18 O 1.21294 * 119.99799 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99763 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99668 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99955 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00105 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99749 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00210 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47135 * 59.99583 * 24 22 20 26 26 H 1.48503 * 109.47208 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46889 * 299.99762 * 24 22 20 28 28 C 1.35911 * 107.17715 * 0.26264 * 5 4 3 29 29 O 1.34200 * 125.44388 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.46905 * 59.99993 * 1 2 3 31 31 H 1.09002 * 109.47158 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47377 * 299.99988 * 1 2 3 33 33 H 0.97000 * 119.99625 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47142 * 300.00370 * 11 9 8 35 35 H 1.08996 * 109.46698 * 60.00424 * 11 9 8 36 36 H 1.09002 * 109.46838 * 179.97438 * 11 9 8 37 37 H 1.09002 * 109.47153 * 299.99641 * 14 12 9 38 38 H 1.09001 * 109.46832 * 179.97438 * 14 12 9 39 39 H 1.09004 * 109.47261 * 59.99813 * 14 12 9 40 40 H 1.00900 * 110.99634 * 278.94600 * 15 12 9 41 41 H 1.08996 * 109.46868 * 300.00084 * 16 15 12 42 42 H 1.09007 * 109.46973 * 59.99616 * 16 15 12 43 43 H 0.96997 * 120.00718 * 0.02562 * 19 17 16 44 44 H 0.96993 * 119.99702 * 180.02562 * 23 22 20 45 45 H 1.08001 * 126.46124 * 179.73420 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5700 2.7406 0.0009 6 6 4.8891 3.3976 0.0009 7 8 4.9639 4.6116 0.0018 8 7 6.0127 2.6533 0.0001 9 6 7.3242 3.3064 0.0007 10 1 7.2740 4.2225 -0.5878 11 6 7.7247 3.6448 1.4381 12 6 8.3634 2.3642 -0.6101 13 1 8.4136 1.4481 -0.0215 14 6 7.9628 2.0259 -2.0474 15 7 9.6782 3.0194 -0.6099 16 6 10.7611 2.0267 -0.6111 17 6 12.0915 2.7345 -0.6115 18 8 12.1335 3.9467 -0.6105 19 7 13.2346 2.0205 -0.6120 20 6 14.4449 2.6645 -0.6119 21 1 14.4823 3.7438 -0.6110 22 6 15.6235 1.9285 -0.6130 23 7 15.5780 0.6152 -0.6136 24 14 17.2726 2.8059 -0.6121 25 1 17.3810 3.6550 0.6014 26 1 18.3673 1.8024 -0.6129 27 1 17.3806 3.6579 -1.8237 28 6 2.3603 3.3600 0.0066 29 8 1.4227 2.3958 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 5.9531 1.6852 -0.0010 34 1 6.9842 4.3161 1.8731 35 1 7.7747 2.7287 2.0265 36 1 8.7006 4.1303 1.4385 37 1 6.9872 1.5399 -2.0479 38 1 8.7035 1.3549 -2.4826 39 1 7.9127 2.9420 -2.6359 40 1 9.7670 3.6521 -1.3909 41 1 10.6819 1.4017 0.2784 42 1 10.6813 1.4030 -1.5015 43 1 13.2011 1.0512 -0.6125 44 1 16.4007 0.1014 -0.6140 45 1 2.1849 4.4256 0.0124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275453500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = -107.171588 kcal Electronic energy + Delta-G solvation = -28635.972818 eV Core-core repulsion = 24268.989812 eV Total energy + Delta-G solvation = -4366.983005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.55189 -40.96151 -40.14815 -39.77312 -38.41512 -36.11288 -36.01848 -35.36486 -33.25244 -32.04174 -31.07464 -30.50823 -28.30407 -27.93318 -25.84025 -25.82635 -24.10656 -23.37689 -21.81367 -21.69166 -21.02448 -20.06816 -19.87617 -18.58843 -18.47763 -17.73099 -17.40101 -17.34183 -16.67416 -16.39870 -16.30921 -16.25999 -15.87781 -15.82677 -15.34637 -15.15624 -15.10832 -14.58480 -14.51544 -14.25006 -13.94014 -13.51272 -13.36662 -13.19281 -13.09667 -12.97357 -12.95101 -12.70711 -12.55856 -12.41036 -12.24555 -12.11250 -12.08912 -11.94150 -11.67000 -11.47902 -11.37390 -10.35225 -10.21615 -9.98962 -9.76233 -9.28032 -8.44496 -5.92979 0.01307 0.87443 0.89906 1.41316 1.43057 1.53800 1.67591 2.00687 2.08737 2.17731 2.31699 2.98537 3.23027 3.35525 3.58471 3.67767 3.74970 4.03259 4.11962 4.21664 4.22385 4.25589 4.33962 4.41560 4.48766 4.49600 4.58402 4.64085 4.65750 4.68244 4.80414 4.87303 4.97502 5.05906 5.22215 5.36677 5.43039 5.49438 5.59448 5.91048 6.11561 6.27914 6.38725 6.56667 6.62832 7.07210 7.15123 7.59333 8.14929 8.72585 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.001682 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.064033 B =16645.199697 C =17253.231401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.256 6.256 3 C 0.381 3.619 4 N -0.481 5.481 5 C -0.075 4.075 6 C 0.605 3.395 7 O -0.563 6.563 8 N -0.694 5.694 9 C 0.160 3.840 10 H 0.074 0.926 11 C -0.146 4.146 12 C 0.085 3.915 13 H 0.098 0.902 14 C -0.178 4.178 15 N -0.669 5.669 16 C 0.068 3.932 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.028 3.972 29 O -0.216 6.216 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.346 0.654 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.406 -4.665 0.433 33.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.164 6.164 3 C 0.135 3.865 4 N -0.227 5.227 5 C -0.193 4.193 6 C 0.391 3.609 7 O -0.443 6.443 8 N -0.344 5.344 9 C 0.056 3.944 10 H 0.092 0.908 11 C -0.204 4.204 12 C -0.026 4.026 13 H 0.116 0.884 14 C -0.237 4.237 15 N -0.301 5.301 16 C -0.064 4.064 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.045 4.045 29 O -0.107 6.107 30 H 0.095 0.905 31 H 0.163 0.837 32 H 0.095 0.905 33 H 0.252 0.748 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.165 0.835 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -32.698 -3.827 1.116 32.940 hybrid contribution 0.249 -0.323 -0.891 0.980 sum -32.449 -4.150 0.225 32.714 Atomic orbital electron populations 1.23703 0.72617 1.07759 1.03909 1.86419 1.26127 1.14965 1.88924 1.23471 0.85534 0.80294 0.97222 1.70999 1.11006 1.15894 1.24811 1.21523 0.95822 0.88733 1.13251 1.16788 0.82568 0.85640 0.75892 1.90840 1.87149 1.13886 1.52401 1.45746 1.04725 1.11079 1.72864 1.20758 0.80465 0.95798 0.97427 0.90777 1.21950 1.01584 1.01609 0.95268 1.21729 0.87748 0.96678 0.96437 0.88365 1.22467 1.02700 1.02122 0.96429 1.59958 1.00201 1.18423 1.51516 1.21544 0.87782 0.93799 1.03261 1.20896 0.86516 0.87922 0.82098 1.90502 1.87987 1.15877 1.56552 1.41915 1.04741 1.09264 1.65154 1.19634 0.83847 0.92985 1.49975 0.90361 1.26015 1.02647 0.96229 0.96320 1.69664 1.30430 1.05635 1.50338 0.85003 0.76756 0.77764 0.78895 1.19830 1.19497 1.19742 1.25569 0.84082 0.94781 1.00071 1.84437 1.39151 1.15586 1.71510 0.90475 0.83725 0.90486 0.74774 0.93705 0.92012 0.91329 0.90736 0.91911 0.92790 0.83457 0.87541 0.91315 0.76949 0.91339 0.71916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.73 113.37 1.22 1.26 16 2 O -0.26 -3.32 10.55 -64.24 -0.68 -4.00 16 3 C 0.38 6.30 8.98 130.43 1.17 7.47 16 4 N -0.48 -9.83 11.10 -419.40 -4.65 -14.48 16 5 C -0.08 -1.49 6.99 40.31 0.28 -1.21 16 6 C 0.61 14.32 7.78 86.65 0.67 14.99 16 7 O -0.56 -16.41 16.55 -4.12 -0.07 -16.48 16 8 N -0.69 -14.72 4.38 -445.83 -1.95 -16.67 16 9 C 0.16 3.85 2.34 44.99 0.11 3.96 16 10 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 11 C -0.15 -3.78 9.33 71.98 0.67 -3.11 16 12 C 0.08 1.92 2.22 44.91 0.10 2.02 16 13 H 0.10 1.98 7.80 -2.39 -0.02 1.96 16 14 C -0.18 -3.59 9.00 71.98 0.65 -2.94 16 15 N -0.67 -20.33 5.11 -495.56 -2.53 -22.87 16 16 C 0.07 2.26 5.97 85.56 0.51 2.77 16 17 C 0.44 20.67 7.82 87.66 0.69 21.35 16 18 O -0.62 -34.51 15.78 -3.07 -0.05 -34.55 16 19 N -0.57 -29.34 5.29 -306.99 -1.62 -30.97 16 20 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 23 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 24 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 C 0.03 0.38 11.93 67.28 0.80 1.19 16 29 O -0.22 -2.87 10.20 18.83 0.19 -2.68 16 30 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.14 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.42 7.62 8.11 -92.71 -0.75 6.87 16 34 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 2.07 7.60 -2.39 -0.02 2.05 16 37 H 0.07 1.31 7.45 -2.39 -0.02 1.29 16 38 H 0.06 1.25 7.45 -2.39 -0.02 1.23 16 39 H 0.05 1.16 8.13 -2.38 -0.02 1.14 16 40 H 0.35 11.36 8.17 -89.69 -0.73 10.63 16 41 H 0.11 3.14 8.06 -2.39 -0.02 3.12 16 42 H 0.07 1.97 7.43 -2.38 -0.02 1.96 16 43 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 44 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.27 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -74.87 391.05 -2.06 -76.94 By element: Atomic # 1 Polarization: 41.80 SS G_CDS: -1.15 Total: 40.65 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 8.15 Total: 29.26 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -10.48 Total: -134.38 kcal Atomic # 8 Polarization: -57.11 SS G_CDS: -0.60 Total: -57.71 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -74.87 -2.06 -76.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275453500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.236 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds