Wall clock time and date at job start Sat Apr 11 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35354 * 116.99830 * 2 1 4 4 N 1.30552 * 125.44685 * 180.29814 * 3 2 1 5 5 C 1.36329 * 108.38266 * 180.16438 * 4 3 2 6 6 C 1.47366 * 126.40988 * 179.82564 * 5 4 3 7 7 O 1.21628 * 119.99607 * 179.68500 * 6 5 4 8 8 N 1.34770 * 120.00293 * 359.69122 * 6 5 4 9 9 C 1.46504 * 119.99996 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47384 * 34.99506 * 9 8 6 11 11 C 1.52998 * 109.46876 * 274.99364 * 9 8 6 12 12 C 1.53002 * 109.47062 * 154.99792 * 9 8 6 13 13 H 1.09004 * 109.47006 * 294.99655 * 12 9 8 14 14 C 1.52993 * 109.47392 * 54.99431 * 12 9 8 15 15 N 1.46906 * 109.47053 * 174.99868 * 12 9 8 16 16 C 1.46894 * 111.00072 * 154.99769 * 15 12 9 17 17 C 1.50703 * 109.47113 * 179.97438 * 16 15 12 18 18 O 1.21290 * 119.99912 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99982 * 179.97438 * 17 16 15 20 20 C 1.37090 * 120.00116 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99763 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00119 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00131 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00028 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47151 * 59.99757 * 24 22 20 26 26 H 1.48491 * 109.47056 * 180.02562 * 24 22 20 27 27 H 1.48510 * 109.46910 * 299.99957 * 24 22 20 28 28 C 1.35919 * 107.17445 * 359.56089 * 5 4 3 29 29 O 1.34204 * 125.44732 * 359.97438 * 3 2 1 30 30 H 1.09000 * 109.47131 * 60.00159 * 1 2 3 31 31 H 1.09008 * 109.47077 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47521 * 299.99904 * 1 2 3 33 33 H 0.96998 * 119.99973 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.47081 * 60.00255 * 11 9 8 35 35 H 1.09000 * 109.47396 * 179.97438 * 11 9 8 36 36 H 1.08998 * 109.47230 * 300.00237 * 11 9 8 37 37 H 1.08992 * 109.47715 * 300.00188 * 14 12 9 38 38 H 1.09004 * 109.46862 * 60.00135 * 14 12 9 39 39 H 1.09004 * 109.46998 * 179.97438 * 14 12 9 40 40 H 1.00901 * 110.99477 * 278.95311 * 15 12 9 41 41 H 1.08998 * 109.47278 * 299.99867 * 16 15 12 42 42 H 1.09000 * 109.47351 * 59.99975 * 16 15 12 43 43 H 0.97008 * 119.99862 * 0.02562 * 19 17 16 44 44 H 0.97002 * 120.00064 * 180.02562 * 23 22 20 45 45 H 1.07995 * 126.45543 * 180.29679 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3348 1.3979 -0.0055 5 6 3.5700 2.7407 0.0003 6 6 4.8891 3.3977 0.0006 7 8 4.9638 4.6116 0.0003 8 7 6.0126 2.6534 0.0011 9 6 7.3240 3.3066 0.0020 10 1 7.2736 4.2220 0.5916 11 6 7.7253 3.6466 -1.4347 12 6 8.3630 2.3636 0.6121 13 1 8.1257 2.1919 1.6621 14 6 8.3458 1.0309 -0.1391 15 7 9.6971 2.9693 0.5043 16 6 10.5980 2.4460 1.5398 17 6 11.9539 3.0883 1.3974 18 8 12.1503 3.9017 0.5193 19 7 12.9480 2.7590 2.2457 20 6 14.1815 3.3429 2.1158 21 1 14.3565 4.0672 1.3340 22 6 15.2067 3.0030 2.9901 23 7 14.9940 2.1214 3.9411 24 14 16.8873 3.7993 2.8136 25 1 16.7568 5.2704 2.9684 26 1 17.7982 3.2698 3.8599 27 1 17.4430 3.4901 1.4715 28 6 2.3601 3.3601 -0.0004 29 8 1.4226 2.3959 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 5.9531 1.6852 0.0016 34 1 6.9851 4.3184 -1.8693 35 1 8.7008 4.1330 -1.4341 36 1 7.7757 2.7312 -2.0242 37 1 7.3560 0.5815 -0.0592 38 1 8.5831 1.2026 -1.1891 39 1 9.0863 0.3593 0.2953 40 1 10.0845 2.8290 -0.4167 41 1 10.1900 2.6724 2.5248 42 1 10.6942 1.3662 1.4259 43 1 12.7910 2.1082 2.9477 44 1 15.7095 1.8844 4.5516 45 1 2.1848 4.4257 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275453574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:52 Heat of formation + Delta-G solvation = -104.315675 kcal Electronic energy + Delta-G solvation = -28647.262062 eV Core-core repulsion = 24280.402898 eV Total energy + Delta-G solvation = -4366.859164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.55798 -41.01759 -40.16075 -39.77965 -38.55965 -36.11955 -36.02606 -35.33729 -33.26092 -32.15156 -31.08564 -30.01411 -28.30584 -27.97847 -26.22870 -25.86783 -24.51823 -23.44430 -21.88422 -21.14226 -20.81031 -20.10880 -19.89079 -18.59401 -18.55443 -17.73591 -17.40116 -17.11243 -16.86665 -16.41231 -16.36608 -16.27581 -16.01956 -15.82650 -15.59078 -15.18538 -15.12472 -14.73500 -14.50804 -14.09246 -13.87775 -13.48633 -13.33000 -13.15973 -13.09543 -13.06310 -12.95687 -12.86094 -12.56044 -12.41328 -12.11660 -12.10957 -11.96164 -11.89463 -11.81174 -11.48266 -11.37835 -10.35737 -10.20296 -9.99596 -9.76518 -9.30738 -8.44817 -5.93421 0.00679 0.86881 0.89097 1.41203 1.42932 1.53791 1.67207 2.01131 2.07821 2.16694 2.31384 2.97211 3.22611 3.34713 3.56160 3.73403 3.79178 3.89692 4.11000 4.21371 4.22745 4.25572 4.31389 4.41192 4.45953 4.48156 4.55374 4.63112 4.65182 4.67038 4.75321 4.86719 4.96388 5.02012 5.21918 5.40989 5.42423 5.44643 5.58966 5.89639 6.10386 6.27110 6.41735 6.55584 6.62224 7.06327 7.14506 7.58511 8.13953 8.72259 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028267 B = 0.001680 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.310249 B =16666.583499 C =17147.570450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.256 6.256 3 C 0.382 3.618 4 N -0.481 5.481 5 C -0.076 4.076 6 C 0.603 3.397 7 O -0.563 6.563 8 N -0.696 5.696 9 C 0.159 3.841 10 H 0.074 0.926 11 C -0.156 4.156 12 C 0.084 3.916 13 H 0.090 0.910 14 C -0.184 4.184 15 N -0.672 5.672 16 C 0.067 3.933 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.029 3.971 29 O -0.216 6.216 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.414 0.586 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.350 0.650 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.303 -7.468 -6.647 33.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.164 6.164 3 C 0.135 3.865 4 N -0.228 5.228 5 C -0.194 4.194 6 C 0.389 3.611 7 O -0.442 6.442 8 N -0.348 5.348 9 C 0.054 3.946 10 H 0.092 0.908 11 C -0.214 4.214 12 C -0.026 4.026 13 H 0.108 0.892 14 C -0.243 4.243 15 N -0.305 5.305 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.044 4.044 29 O -0.106 6.106 30 H 0.095 0.905 31 H 0.163 0.837 32 H 0.095 0.905 33 H 0.253 0.747 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.170 0.830 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -31.705 -6.353 -6.715 33.025 hybrid contribution 0.380 -0.687 0.091 0.790 sum -31.325 -7.040 -6.625 32.782 Atomic orbital electron populations 1.23707 0.72603 1.07774 1.03920 1.86418 1.26137 1.14925 1.88919 1.23468 0.85520 0.80307 0.97184 1.70990 1.11051 1.15885 1.24865 1.21523 0.95815 0.88757 1.13331 1.16838 0.82665 0.85679 0.75889 1.90843 1.87179 1.13906 1.52303 1.45911 1.04757 1.11146 1.72992 1.20770 0.80493 0.95762 0.97574 0.90755 1.22096 1.01842 1.01996 0.95501 1.21686 0.88209 0.92076 1.00657 0.89232 1.22555 1.03291 0.97054 1.01412 1.59967 1.01837 1.61154 1.07517 1.21550 0.89608 0.97626 0.97786 1.20878 0.87194 0.85626 0.83759 1.90494 1.83952 1.38665 1.37751 1.41917 1.09887 1.39457 1.29785 1.19643 0.88308 1.22965 1.15571 0.90307 1.26024 1.03154 0.97112 0.94925 1.69664 1.35539 1.32854 1.18023 0.84995 0.76874 0.78319 0.78178 1.19851 1.19499 1.19662 1.25571 0.84058 0.94789 0.99980 1.84435 1.39130 1.15576 1.71499 0.90454 0.83698 0.90498 0.74682 0.93328 0.91266 0.91144 0.90438 0.91397 0.91765 0.83025 0.87934 0.91100 0.76966 0.91330 0.71892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.73 113.37 1.22 1.26 16 2 O -0.26 -3.31 10.55 -64.23 -0.68 -3.98 16 3 C 0.38 6.34 8.98 130.43 1.17 7.52 16 4 N -0.48 -9.94 11.10 -419.38 -4.65 -14.59 16 5 C -0.08 -1.54 6.99 40.31 0.28 -1.26 16 6 C 0.60 14.63 7.78 86.65 0.67 15.31 16 7 O -0.56 -16.78 16.55 -4.12 -0.07 -16.85 16 8 N -0.70 -15.12 4.99 -445.84 -2.22 -17.34 16 9 C 0.16 3.88 2.63 44.99 0.12 4.00 16 10 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 11 C -0.16 -3.80 8.86 71.98 0.64 -3.16 16 12 C 0.08 1.95 2.64 44.91 0.12 2.06 16 13 H 0.09 1.99 7.80 -2.38 -0.02 1.98 16 14 C -0.18 -3.40 8.68 71.98 0.62 -2.77 16 15 N -0.67 -20.67 5.23 -495.58 -2.59 -23.26 16 16 C 0.07 2.24 5.97 85.56 0.51 2.75 16 17 C 0.44 20.84 7.82 87.66 0.69 21.52 16 18 O -0.62 -34.57 15.78 -3.06 -0.05 -34.61 16 19 N -0.57 -29.52 5.29 -306.98 -1.62 -31.15 16 20 C -0.34 -19.20 9.68 84.04 0.81 -18.38 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 24 Si 0.99 43.29 29.55 68.60 2.03 45.31 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 C 0.03 0.41 11.93 67.28 0.80 1.21 16 29 O -0.22 -2.89 10.20 18.90 0.19 -2.70 16 30 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.15 -0.31 8.14 -2.38 -0.02 -0.33 16 32 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.41 7.78 6.30 -92.71 -0.58 7.20 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.89 7.13 -2.39 -0.02 1.87 16 36 H 0.07 1.46 6.56 -2.39 -0.02 1.44 16 37 H 0.08 1.17 6.29 -2.39 -0.02 1.15 16 38 H 0.07 1.24 6.55 -2.38 -0.02 1.23 16 39 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 40 H 0.35 11.19 7.39 -89.69 -0.66 10.53 16 41 H 0.10 3.16 8.06 -2.39 -0.02 3.15 16 42 H 0.07 2.05 7.44 -2.39 -0.02 2.03 16 43 H 0.40 19.35 7.90 -92.70 -0.73 18.61 16 44 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 45 H 0.27 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -75.52 384.33 -2.17 -77.68 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -0.91 Total: 41.23 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 8.12 Total: 29.85 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -10.81 Total: -135.93 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -0.60 Total: -58.15 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -75.52 -2.17 -77.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275453574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.635 kcal (2) G-P(sol) polarization free energy of solvation -75.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds