Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.87337 * 2 1 4 4 C 1.54321 * 110.01161 * 238.89849 * 2 1 3 5 5 C 1.55448 * 102.96961 * 262.70128 * 4 2 1 6 6 H 1.09004 * 111.00873 * 82.52495 * 5 4 2 7 7 N 1.46893 * 111.11668 * 206.46036 * 5 4 2 8 8 C 1.46903 * 111.00140 * 198.55972 * 7 5 4 9 9 C 1.50701 * 109.47525 * 180.02562 * 8 7 5 10 10 N 1.33307 * 126.54772 * 269.68795 * 9 8 7 11 11 N 1.29005 * 107.35316 * 179.83023 * 10 9 8 12 12 N 1.28779 * 108.72297 * 0.43201 * 11 10 9 13 13 C 1.46499 * 125.44614 * 179.72208 * 12 11 10 14 14 N 1.28876 * 109.10597 * 359.72479 * 12 11 10 15 15 C 1.54905 * 101.45165 * 324.51771 * 5 4 2 16 16 N 1.47026 * 109.88329 * 121.01607 * 2 1 3 17 17 C 1.34780 * 125.64285 * 300.64713 * 16 2 1 18 18 O 1.21279 * 120.00109 * 0.02562 * 17 16 2 19 19 C 1.50704 * 119.99729 * 180.02562 * 17 16 2 20 20 S 1.80999 * 109.47165 * 180.02562 * 19 17 16 21 21 C 1.76195 * 99.99984 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00206 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99941 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00138 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00024 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47354 * 59.99873 * 25 23 21 27 27 H 1.48495 * 109.47331 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46979 * 300.00050 * 25 23 21 29 29 H 1.08997 * 109.46860 * 300.43934 * 1 2 3 30 30 H 1.08995 * 109.47343 * 60.44351 * 1 2 3 31 31 H 1.08997 * 109.47142 * 180.44217 * 1 2 3 32 32 H 1.08998 * 110.71927 * 21.06573 * 4 2 1 33 33 H 1.08998 * 110.72073 * 144.15996 * 4 2 1 34 34 H 1.00908 * 110.99883 * 74.60815 * 7 5 4 35 35 H 1.09006 * 109.46587 * 299.99946 * 8 7 5 36 36 H 1.08990 * 109.47175 * 60.00129 * 8 7 5 37 37 H 1.08998 * 109.47153 * 270.00443 * 13 12 11 38 38 H 1.09001 * 109.46926 * 30.00148 * 13 12 11 39 39 H 1.09000 * 109.47402 * 149.99939 * 13 12 11 40 40 H 1.09002 * 110.36692 * 278.10842 * 15 5 4 41 41 H 1.08995 * 110.36664 * 155.89643 * 15 5 4 42 42 H 1.08998 * 109.46808 * 300.00551 * 19 17 16 43 43 H 1.09005 * 109.46733 * 60.00331 * 19 17 16 44 44 H 0.97002 * 120.00259 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2416 5 6 2.3583 -2.1709 -0.6897 6 1 1.4529 -2.7770 -0.6579 7 7 3.4058 -2.8341 -1.4776 8 6 3.3878 -4.2868 -1.2603 9 6 4.4740 -4.9313 -2.0825 10 7 4.3599 -5.3896 -3.3291 11 7 5.5108 -5.8603 -3.6728 12 7 6.3265 -5.7192 -2.6863 13 6 7.7311 -6.1355 -2.6791 14 7 5.7096 -5.1534 -1.7065 15 6 2.8599 -1.8465 0.7395 16 7 2.0300 -0.7124 1.1849 17 6 1.7721 -0.3833 2.4662 18 8 1.0720 0.5747 2.7171 19 6 2.3537 -1.2057 3.5872 20 16 1.8287 -0.5166 5.1764 21 6 2.6288 -1.6376 6.2753 22 1 3.2241 -2.4480 5.8811 23 6 2.4941 -1.4793 7.6476 24 7 1.7690 -0.4914 8.1280 25 14 3.3418 -2.6682 8.8126 26 1 4.8089 -2.6198 8.5883 27 1 3.0422 -2.2847 10.2156 28 1 2.8476 -4.0456 8.5602 29 1 -0.3633 0.5206 0.8860 30 1 -0.3634 0.5069 -0.8939 31 1 -0.3633 -1.0276 0.0079 32 1 1.2962 -0.7906 -2.0199 33 1 2.9666 -0.2790 -1.6181 34 1 4.3145 -2.4484 -1.2683 35 1 3.5578 -4.4984 -0.2046 36 1 2.4192 -4.6870 -1.5598 37 1 7.8041 -7.1613 -2.3179 38 1 8.1325 -6.0772 -3.6908 39 1 8.3016 -5.4778 -2.0234 40 1 3.9117 -1.5612 0.7168 41 1 2.7144 -2.7041 1.3963 42 1 2.0022 -2.2340 3.5035 43 1 3.4418 -1.1874 3.5245 44 1 1.6745 -0.3809 9.0871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278344060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = 75.680238 kcal Electronic energy + Delta-G solvation = -26461.801448 eV Core-core repulsion = 22577.793114 eV Total energy + Delta-G solvation = -3884.008333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.34309 -41.30416 -39.04202 -36.89753 -35.74662 -34.59718 -34.10687 -33.34867 -31.14894 -30.24051 -29.30285 -27.67562 -26.95334 -26.68580 -24.06432 -23.63464 -23.00712 -21.79986 -20.35218 -19.55258 -18.57828 -18.48383 -18.02739 -17.34430 -16.95453 -16.88548 -16.33648 -16.05645 -15.79732 -15.61253 -15.01921 -14.75020 -14.61270 -14.44153 -14.25807 -14.10995 -14.00500 -13.89857 -13.59772 -13.44753 -13.18097 -13.08009 -13.03207 -12.87422 -12.84864 -12.61221 -12.33314 -12.01205 -11.99033 -11.92905 -11.75618 -11.58223 -11.15455 -11.13797 -10.88596 -10.29627 -9.77320 -9.51520 -8.68868 -8.35264 -6.14084 0.18749 1.03173 1.14484 1.23254 1.43183 1.44175 1.54177 1.57681 2.05752 2.26594 2.74395 2.98680 3.13208 3.26515 3.30181 3.53145 3.62527 3.88835 4.05677 4.09247 4.12072 4.22711 4.24498 4.28072 4.34624 4.39643 4.45295 4.50338 4.56019 4.67257 4.72753 4.76290 4.78902 4.82500 4.99049 5.05420 5.15956 5.21410 5.34291 5.40086 5.52560 5.81454 6.18422 6.20258 6.40415 7.05544 7.14159 7.32422 8.73737 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009870 B = 0.002538 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.105421 B =11031.048707 C =13560.444038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.064 0.936 4 C -0.100 4.100 5 C 0.094 3.906 6 H 0.111 0.889 7 N -0.664 5.664 8 C 0.156 3.844 9 C 0.166 3.834 10 N -0.299 5.299 11 N -0.083 5.083 12 N -0.129 5.129 13 C 0.078 3.922 14 N -0.314 5.314 15 C 0.063 3.937 16 N -0.609 5.609 17 C 0.547 3.453 18 O -0.560 6.560 19 C -0.120 4.120 20 S -0.149 6.149 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.261 1.261 29 H 0.033 0.967 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.351 0.649 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.303 -12.227 -25.895 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.082 0.918 4 C -0.138 4.138 5 C -0.018 4.018 6 H 0.129 0.871 7 N -0.295 5.295 8 C 0.024 3.976 9 C -0.117 4.117 10 N -0.170 5.170 11 N -0.076 5.076 12 N -0.043 5.043 13 C -0.059 4.059 14 N -0.167 5.167 15 C -0.061 4.061 16 N -0.345 5.345 17 C 0.335 3.665 18 O -0.438 6.438 19 C -0.271 4.271 20 S 0.078 5.922 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.186 1.186 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.170 0.830 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.165 -11.067 -26.437 30.409 hybrid contribution 1.353 -1.186 2.098 2.764 sum 11.518 -12.253 -24.339 29.583 Atomic orbital electron populations 1.22107 0.94751 1.02468 1.02390 1.21760 0.94918 0.96399 0.84336 0.91809 1.22683 1.03021 0.93133 0.94965 1.22729 0.95405 0.95862 0.87754 0.87094 1.60475 1.08985 1.02015 1.58048 1.20258 0.94054 0.87342 0.95927 1.25736 0.92701 1.01365 0.91865 1.75820 1.14089 1.14152 1.12921 1.78937 0.95625 1.17884 1.15178 1.50539 1.14391 1.34324 1.05092 1.23012 0.69718 1.04509 1.08711 1.74698 1.08135 1.16779 1.17094 1.23389 0.95462 0.88989 0.98282 1.48395 1.50857 1.31310 1.03897 1.19733 0.79922 0.84102 0.82785 1.90679 1.39465 1.30135 1.83556 1.23314 1.04397 1.02924 0.96494 1.85587 1.68143 1.42736 0.95755 1.23142 1.36420 1.16181 0.93661 0.89984 1.26136 0.95808 0.97866 0.99325 1.70175 1.38858 1.31445 1.14251 0.85005 0.78734 0.78006 0.76261 1.18607 1.20389 1.18594 0.94731 0.89307 0.91925 0.87570 0.89288 0.82967 0.90460 0.86541 0.86064 0.84908 0.85488 0.90159 0.89876 0.87692 0.87941 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.07 71.98 0.65 -3.02 16 2 C 0.13 2.85 3.49 45.34 0.16 3.01 16 3 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.10 -1.37 6.21 31.88 0.20 -1.17 16 5 C 0.09 1.22 3.33 46.41 0.15 1.38 16 6 H 0.11 1.35 7.92 -2.38 -0.02 1.33 16 7 N -0.66 -8.25 6.37 -487.89 -3.11 -11.36 16 8 C 0.16 2.01 6.18 85.56 0.53 2.53 16 9 C 0.17 2.98 7.88 138.55 1.09 4.07 16 10 N -0.30 -6.52 12.50 -51.26 -0.64 -7.16 16 11 N -0.08 -1.60 13.25 37.02 0.49 -1.11 16 12 N -0.13 -1.82 4.40 -206.73 -0.91 -2.73 16 13 C 0.08 0.16 11.63 127.77 1.49 1.64 16 14 N -0.31 -5.35 12.13 -51.20 -0.62 -5.98 16 15 C 0.06 1.14 6.26 86.85 0.54 1.68 16 16 N -0.61 -16.39 3.08 -788.07 -2.43 -18.82 16 17 C 0.55 21.01 7.65 87.66 0.67 21.68 16 18 O -0.56 -26.63 14.75 -3.03 -0.04 -26.67 16 19 C -0.12 -4.89 5.16 71.24 0.37 -4.52 16 20 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 21 C -0.55 -31.24 9.50 67.95 0.65 -30.60 16 22 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 23 C 0.01 0.77 5.49 84.86 0.47 1.23 16 24 N -0.91 -56.11 13.22 21.65 0.29 -55.82 16 25 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 29 H 0.03 1.09 6.73 -2.39 -0.02 1.07 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.11 1.18 7.83 -2.39 -0.02 1.16 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.35 4.24 8.30 -89.69 -0.74 3.50 16 35 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.12 1.33 8.09 -2.39 -0.02 1.31 16 37 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.08 1.30 7.80 -2.39 -0.02 1.28 16 41 H 0.08 1.45 7.47 -2.39 -0.02 1.44 16 42 H 0.10 3.87 7.84 -2.40 -0.02 3.85 16 43 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -84.66 384.39 1.13 -83.52 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.28 Total: 12.35 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 6.96 Total: -2.07 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -6.93 Total: -102.98 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.04 Total: -26.67 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -84.66 1.13 -83.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278344060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.204 kcal (2) G-P(sol) polarization free energy of solvation -84.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds