Wall clock time and date at job start Sat Apr 11 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.87936 * 2 1 4 4 C 1.54372 * 109.90246 * 121.14510 * 2 1 3 5 5 C 1.55158 * 102.92023 * 141.57525 * 4 2 1 6 6 H 1.09007 * 111.00305 * 82.64481 * 5 4 2 7 7 N 1.46901 * 111.00178 * 206.45200 * 5 4 2 8 8 C 1.46905 * 110.99870 * 201.82104 * 7 5 4 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 5 10 10 N 1.33320 * 126.54894 * 90.02373 * 9 8 7 11 11 N 1.29002 * 107.35352 * 179.97438 * 10 9 8 12 12 N 1.28772 * 108.72468 * 0.02562 * 11 10 9 13 13 C 1.46506 * 125.44615 * 180.02562 * 12 11 10 14 14 N 1.28881 * 109.10694 * 359.72555 * 12 11 10 15 15 C 1.54906 * 101.62057 * 324.54669 * 5 4 2 16 16 N 1.47027 * 109.88423 * 238.98294 * 2 1 3 17 17 C 1.34785 * 125.64419 * 61.60471 * 16 2 1 18 18 O 1.21277 * 120.00124 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99792 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.47036 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99832 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00136 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00078 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99872 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00092 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47090 * 90.00339 * 25 23 21 27 27 H 1.48506 * 109.46935 * 209.99887 * 25 23 21 28 28 H 1.48493 * 109.47360 * 330.00118 * 25 23 21 29 29 H 1.09003 * 109.47549 * 179.55910 * 1 2 3 30 30 H 1.08994 * 109.47150 * 299.56004 * 1 2 3 31 31 H 1.09004 * 109.47481 * 59.56340 * 1 2 3 32 32 H 1.08999 * 110.70375 * 23.23365 * 4 2 1 33 33 H 1.08993 * 110.75552 * 259.94281 * 4 2 1 34 34 H 1.00901 * 111.00067 * 325.77280 * 7 5 4 35 35 H 1.09001 * 109.46798 * 300.00327 * 8 7 5 36 36 H 1.08998 * 109.46961 * 60.00043 * 8 7 5 37 37 H 1.08998 * 109.47299 * 89.97448 * 13 12 11 38 38 H 1.09000 * 109.46823 * 209.97630 * 13 12 11 39 39 H 1.08999 * 109.47154 * 329.96764 * 13 12 11 40 40 H 1.08999 * 110.37062 * 155.82711 * 15 5 4 41 41 H 1.09003 * 110.36681 * 278.04628 * 15 5 4 42 42 H 1.09005 * 109.47185 * 300.00544 * 19 17 16 43 43 H 1.08999 * 109.46831 * 59.99742 * 19 17 16 44 44 H 0.96997 * 120.00184 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0554 -0.7507 1.2423 5 6 3.2875 -1.5153 0.6902 6 1 4.1658 -0.8703 0.6592 7 7 3.5538 -2.7250 1.4799 8 6 4.9483 -3.1596 1.3232 9 6 5.1831 -4.4005 2.1454 10 7 5.0241 -5.6615 1.7429 11 7 5.3264 -6.4242 2.7385 12 7 5.6645 -5.6854 3.7375 13 6 6.0772 -6.1751 5.0551 14 7 5.5879 -4.4464 3.3909 15 6 2.8145 -1.8784 -0.7395 16 7 2.0300 -0.7125 -1.1849 17 6 1.8073 -0.3586 -2.4663 18 8 1.1435 0.6249 -2.7172 19 6 2.3832 -1.1850 -3.5872 20 16 1.9123 -0.4578 -5.1764 21 6 2.6950 -1.5912 -6.2753 22 1 3.2549 -2.4264 -5.8810 23 6 2.5913 -1.4112 -7.6476 24 7 1.9085 -0.3936 -8.1282 25 14 3.4216 -2.6123 -8.8126 26 1 2.4831 -3.7165 -9.1368 27 1 3.8050 -1.9059 -10.0613 28 1 4.6368 -3.1693 -8.1659 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3634 0.5206 -0.8861 32 1 1.3057 -1.4473 1.6174 33 1 2.3543 -0.0484 2.0203 34 1 3.3277 -2.5790 2.4524 35 1 5.1452 -3.3771 0.2734 36 1 5.6160 -2.3673 1.6616 37 1 7.1576 -6.3192 5.0672 38 1 5.7993 -5.4466 5.8169 39 1 5.5818 -7.1237 5.2617 40 1 3.6716 -2.0319 -1.3952 41 1 2.1901 -2.7716 -0.7170 42 1 3.4699 -1.2032 -3.5039 43 1 1.9970 -2.2023 -3.5239 44 1 1.8363 -0.2675 -9.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278344062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:05 Heat of formation + Delta-G solvation = 105.442787 kcal Electronic energy + Delta-G solvation = -26368.601607 eV Core-core repulsion = 22485.883875 eV Total energy + Delta-G solvation = -3882.717732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.69794 -40.07755 -37.81896 -36.13986 -35.09938 -33.41837 -32.38387 -32.11124 -30.52652 -28.94741 -28.58779 -26.25450 -25.90163 -25.42829 -23.50488 -22.59103 -21.90353 -21.08133 -18.91815 -18.00423 -17.85815 -17.60518 -16.95227 -16.42973 -15.84364 -15.32447 -14.90283 -14.83702 -14.75551 -14.40491 -14.14763 -14.00017 -13.84109 -13.70041 -13.25731 -13.13631 -12.84406 -12.82626 -12.52023 -12.42233 -12.23977 -11.91523 -11.74986 -11.40791 -11.34821 -11.28561 -11.06475 -11.00823 -10.97610 -10.89383 -10.71495 -10.52410 -9.76766 -9.31704 -9.02100 -8.98645 -8.43676 -8.18235 -6.45198 -6.17208 -3.87354 0.82149 1.51587 1.75281 2.92513 3.12702 3.26353 3.27972 3.33142 3.37182 3.62537 3.81291 3.89180 4.21002 4.25101 4.28643 4.35026 4.43485 4.59399 4.77092 4.88250 5.04037 5.04929 5.13040 5.17923 5.20687 5.36139 5.38354 5.38727 5.46650 5.57374 5.65944 5.67607 5.70932 5.72185 5.80719 5.96728 6.10285 6.21136 6.32301 6.47391 6.60825 6.81025 7.64483 7.74866 7.99633 8.40147 8.63303 9.28230 10.90212 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.002387 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.313352 B =11726.748599 C =14013.884857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.074 0.926 4 C -0.128 4.128 5 C 0.074 3.926 6 H 0.069 0.931 7 N -0.670 5.670 8 C 0.156 3.844 9 C 0.174 3.826 10 N -0.263 5.263 11 N -0.063 5.063 12 N -0.143 5.143 13 C 0.095 3.905 14 N -0.308 5.308 15 C 0.112 3.888 16 N -0.623 5.623 17 C 0.551 3.449 18 O -0.514 6.514 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.533 4.533 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.349 0.651 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -7.961 30.905 32.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.166 4.166 5 C -0.036 4.036 6 H 0.087 0.913 7 N -0.304 5.304 8 C 0.024 3.976 9 C -0.109 4.109 10 N -0.134 5.134 11 N -0.057 5.057 12 N -0.055 5.055 13 C -0.045 4.045 14 N -0.160 5.160 15 C -0.012 4.012 16 N -0.361 5.361 17 C 0.339 3.661 18 O -0.388 6.388 19 C -0.298 4.298 20 S 0.165 5.835 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.128 0.872 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.729 -7.466 29.983 31.623 hybrid contribution 1.842 -0.960 0.163 2.083 sum 8.571 -8.426 30.147 32.454 Atomic orbital electron populations 1.22141 0.94659 1.02393 1.02923 1.21410 0.94907 0.96195 0.83919 0.90749 1.22917 0.97302 0.99275 0.97104 1.22684 0.97676 0.89336 0.93942 0.91292 1.60248 1.20628 1.34393 1.15091 1.20190 0.90030 0.88408 0.98943 1.25412 1.00359 0.95787 0.89360 1.75920 1.17126 1.00764 1.19600 1.79048 1.13220 1.21867 0.91557 1.50039 1.40597 1.01422 1.13447 1.22433 1.03065 1.02518 0.76490 1.74657 1.21983 1.03154 1.16213 1.22234 0.95918 0.89399 0.93698 1.48546 1.53868 1.28763 1.04878 1.19987 0.79769 0.84955 0.81356 1.90689 1.38643 1.26948 1.82561 1.23522 1.03614 1.02743 0.99881 1.85367 1.69802 1.37615 0.90687 1.22864 1.38175 1.14040 0.93074 0.90911 1.24990 0.95287 0.95977 0.97364 1.70020 1.38665 1.28039 1.13625 0.86173 0.79506 0.80265 0.79596 1.20265 1.20805 1.19670 0.92466 0.92127 0.90730 0.89382 0.90128 0.83202 0.87166 0.91674 0.88054 0.87158 0.86890 0.90491 0.90138 0.89382 0.89231 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.10 37.15 0.34 -1.66 16 2 C 0.14 1.66 3.46 -66.93 -0.23 1.43 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.02 5.92 -24.87 -0.15 -1.17 16 5 C 0.07 0.61 3.34 -65.56 -0.22 0.39 16 6 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 7 N -0.67 -5.19 6.38 -105.72 -0.67 -5.87 16 8 C 0.16 1.21 6.19 -4.97 -0.03 1.18 16 9 C 0.17 1.71 7.88 -156.62 -1.23 0.47 16 10 N -0.26 -3.16 12.50 32.45 0.41 -2.76 16 11 N -0.06 -0.67 13.25 60.35 0.80 0.13 16 12 N -0.14 -1.10 4.40 -16.69 -0.07 -1.17 16 13 C 0.09 0.16 11.63 59.85 0.70 0.85 16 14 N -0.31 -2.73 12.13 32.46 0.39 -2.34 16 15 C 0.11 1.28 6.38 -2.53 -0.02 1.26 16 16 N -0.62 -9.07 3.07 -162.99 -0.50 -9.57 16 17 C 0.55 10.76 7.66 -10.98 -0.08 10.67 16 18 O -0.51 -11.89 14.90 5.56 0.08 -11.81 16 19 C -0.15 -3.09 5.16 36.01 0.19 -2.90 16 20 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 21 C -0.53 -15.42 9.50 30.94 0.29 -15.12 16 22 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 25 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.16 6.88 -51.93 -0.36 0.80 16 32 H 0.09 0.69 7.85 -51.93 -0.41 0.28 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.35 2.34 8.48 -39.29 -0.33 2.01 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 37 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.11 0.00 8.14 -51.93 -0.42 -0.43 16 39 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 40 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.71 7.85 -51.91 -0.41 1.31 16 43 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -37.95 385.05 -7.30 -45.25 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.49 Total: -2.17 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.54 Total: -2.58 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 1.09 Total: -47.31 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.95 -7.30 -45.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278344062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.691 kcal (2) G-P(sol) polarization free energy of solvation -37.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds