Wall clock time and date at job start Sat Apr 11 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.87936 * 2 1 4 4 C 1.54372 * 109.90246 * 121.14510 * 2 1 3 5 5 C 1.55158 * 102.92023 * 141.57525 * 4 2 1 6 6 H 1.09007 * 111.00305 * 82.64481 * 5 4 2 7 7 N 1.46901 * 111.00178 * 206.45200 * 5 4 2 8 8 C 1.46905 * 110.99870 * 201.82104 * 7 5 4 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 5 10 10 N 1.33320 * 126.54894 * 90.02373 * 9 8 7 11 11 N 1.29002 * 107.35352 * 179.97438 * 10 9 8 12 12 N 1.28772 * 108.72468 * 0.02562 * 11 10 9 13 13 C 1.46506 * 125.44615 * 180.02562 * 12 11 10 14 14 N 1.28881 * 109.10694 * 359.72555 * 12 11 10 15 15 C 1.54906 * 101.62057 * 324.54669 * 5 4 2 16 16 N 1.47027 * 109.88423 * 238.98294 * 2 1 3 17 17 C 1.34785 * 125.64419 * 61.60471 * 16 2 1 18 18 O 1.21277 * 120.00124 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99792 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.47036 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99832 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00136 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00078 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99872 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00092 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47090 * 90.00339 * 25 23 21 27 27 H 1.48506 * 109.46935 * 209.99887 * 25 23 21 28 28 H 1.48493 * 109.47360 * 330.00118 * 25 23 21 29 29 H 1.09003 * 109.47549 * 179.55910 * 1 2 3 30 30 H 1.08994 * 109.47150 * 299.56004 * 1 2 3 31 31 H 1.09004 * 109.47481 * 59.56340 * 1 2 3 32 32 H 1.08999 * 110.70375 * 23.23365 * 4 2 1 33 33 H 1.08993 * 110.75552 * 259.94281 * 4 2 1 34 34 H 1.00901 * 111.00067 * 325.77280 * 7 5 4 35 35 H 1.09001 * 109.46798 * 300.00327 * 8 7 5 36 36 H 1.08998 * 109.46961 * 60.00043 * 8 7 5 37 37 H 1.08998 * 109.47299 * 89.97448 * 13 12 11 38 38 H 1.09000 * 109.46823 * 209.97630 * 13 12 11 39 39 H 1.08999 * 109.47154 * 329.96764 * 13 12 11 40 40 H 1.08999 * 110.37062 * 155.82711 * 15 5 4 41 41 H 1.09003 * 110.36681 * 278.04628 * 15 5 4 42 42 H 1.09005 * 109.47185 * 300.00544 * 19 17 16 43 43 H 1.08999 * 109.46831 * 59.99742 * 19 17 16 44 44 H 0.96997 * 120.00184 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0554 -0.7507 1.2423 5 6 3.2875 -1.5153 0.6902 6 1 4.1658 -0.8703 0.6592 7 7 3.5538 -2.7250 1.4799 8 6 4.9483 -3.1596 1.3232 9 6 5.1831 -4.4005 2.1454 10 7 5.0241 -5.6615 1.7429 11 7 5.3264 -6.4242 2.7385 12 7 5.6645 -5.6854 3.7375 13 6 6.0772 -6.1751 5.0551 14 7 5.5879 -4.4464 3.3909 15 6 2.8145 -1.8784 -0.7395 16 7 2.0300 -0.7125 -1.1849 17 6 1.8073 -0.3586 -2.4663 18 8 1.1435 0.6249 -2.7172 19 6 2.3832 -1.1850 -3.5872 20 16 1.9123 -0.4578 -5.1764 21 6 2.6950 -1.5912 -6.2753 22 1 3.2549 -2.4264 -5.8810 23 6 2.5913 -1.4112 -7.6476 24 7 1.9085 -0.3936 -8.1282 25 14 3.4216 -2.6123 -8.8126 26 1 2.4831 -3.7165 -9.1368 27 1 3.8050 -1.9059 -10.0613 28 1 4.6368 -3.1693 -8.1659 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3634 0.5206 -0.8861 32 1 1.3057 -1.4473 1.6174 33 1 2.3543 -0.0484 2.0203 34 1 3.3277 -2.5790 2.4524 35 1 5.1452 -3.3771 0.2734 36 1 5.6160 -2.3673 1.6616 37 1 7.1576 -6.3192 5.0672 38 1 5.7993 -5.4466 5.8169 39 1 5.5818 -7.1237 5.2617 40 1 3.6716 -2.0319 -1.3952 41 1 2.1901 -2.7716 -0.7170 42 1 3.4699 -1.2032 -3.5039 43 1 1.9970 -2.2023 -3.5239 44 1 1.8363 -0.2675 -9.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278344062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:04 Heat of formation + Delta-G solvation = 75.998376 kcal Electronic energy + Delta-G solvation = -26369.878413 eV Core-core repulsion = 22485.883875 eV Total energy + Delta-G solvation = -3883.994538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -45.34050 -41.24335 -38.98954 -36.91505 -35.75864 -34.58418 -34.11538 -33.30817 -31.24352 -30.23530 -29.33449 -27.66570 -26.92841 -26.83886 -24.07196 -23.43066 -22.83776 -21.85989 -20.33110 -19.45788 -18.51986 -18.45174 -18.14981 -17.52519 -16.88020 -16.64008 -16.38842 -16.15881 -15.82868 -15.66689 -15.06849 -14.86948 -14.57440 -14.40252 -14.30232 -14.15830 -14.04332 -13.69362 -13.56867 -13.49568 -13.16867 -13.14663 -12.89580 -12.87679 -12.83030 -12.58250 -12.13704 -12.01288 -11.99642 -11.91211 -11.73192 -11.70608 -11.14057 -11.12999 -10.86412 -10.28205 -9.72706 -9.53537 -8.67031 -8.34374 -6.12584 0.18606 1.03433 1.15287 1.25025 1.42582 1.45140 1.56540 1.59747 2.07891 2.27685 2.74328 2.99489 3.12493 3.29193 3.32896 3.46847 3.60145 3.93025 4.03879 4.08957 4.20051 4.25445 4.26078 4.31340 4.37862 4.42166 4.46761 4.52796 4.57688 4.69148 4.73320 4.76980 4.82649 4.84402 4.91815 4.98372 5.16390 5.22613 5.30380 5.42085 5.51333 5.84875 6.20220 6.27934 6.42975 7.06719 7.15927 7.32955 8.74882 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.002387 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.313352 B =11726.748599 C =14013.884857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 H 0.071 0.929 4 C -0.111 4.111 5 C 0.089 3.911 6 H 0.084 0.916 7 N -0.673 5.673 8 C 0.158 3.842 9 C 0.167 3.833 10 N -0.304 5.304 11 N -0.085 5.085 12 N -0.128 5.128 13 C 0.078 3.922 14 N -0.309 5.309 15 C 0.102 3.898 16 N -0.612 5.612 17 C 0.548 3.452 18 O -0.561 6.561 19 C -0.121 4.121 20 S -0.147 6.147 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.013 3.987 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.258 1.258 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.359 0.641 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.750 -9.413 33.738 36.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.021 4.021 6 H 0.101 0.899 7 N -0.308 5.308 8 C 0.026 3.974 9 C -0.116 4.116 10 N -0.175 5.175 11 N -0.079 5.079 12 N -0.042 5.042 13 C -0.060 4.060 14 N -0.162 5.162 15 C -0.022 4.022 16 N -0.347 5.347 17 C 0.336 3.664 18 O -0.439 6.439 19 C -0.273 4.273 20 S 0.080 5.920 21 C -0.693 4.693 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.182 1.182 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.131 0.869 34 H 0.179 0.821 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.524 -8.960 32.888 35.137 hybrid contribution 1.309 -0.551 -0.474 1.497 sum 9.833 -9.511 32.415 35.183 Atomic orbital electron populations 1.22092 0.95037 1.02106 1.02435 1.21724 0.94739 0.96539 0.84280 0.91125 1.22872 0.97002 0.99481 0.95544 1.22504 0.98275 0.89618 0.91744 0.89854 1.60107 1.20917 1.34025 1.15703 1.20240 0.90325 0.88271 0.98519 1.25724 1.00342 0.95746 0.89818 1.75871 1.18815 1.01894 1.20891 1.78966 1.14371 1.22306 0.92228 1.50575 1.38466 1.00952 1.14256 1.23031 1.04602 1.03926 0.74405 1.74640 1.22032 1.03714 1.15842 1.22501 0.95538 0.87999 0.96120 1.48464 1.52906 1.29400 1.03974 1.19672 0.79632 0.84318 0.82747 1.90671 1.40842 1.28832 1.83569 1.23326 1.04627 1.02743 0.96558 1.85517 1.70983 1.39827 0.95674 1.23182 1.38297 1.14160 0.93701 0.90102 1.26129 0.95780 0.97942 0.99293 1.70181 1.40165 1.30154 1.14187 0.84955 0.78661 0.77510 0.76872 1.19341 1.20123 1.18223 0.92535 0.89090 0.94772 0.88620 0.86926 0.82054 0.87712 0.89639 0.86023 0.85082 0.85147 0.90303 0.90435 0.87666 0.88139 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.10 71.98 0.66 -3.11 16 2 C 0.13 2.88 3.46 45.35 0.16 3.04 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 4 C -0.11 -1.37 5.92 31.80 0.19 -1.18 16 5 C 0.09 1.19 3.34 46.31 0.15 1.35 16 6 H 0.08 0.96 7.87 -2.38 -0.02 0.94 16 7 N -0.67 -8.46 6.38 -488.39 -3.12 -11.58 16 8 C 0.16 2.08 6.19 85.55 0.53 2.61 16 9 C 0.17 3.01 7.88 138.55 1.09 4.10 16 10 N -0.30 -7.11 12.50 -51.26 -0.64 -7.76 16 11 N -0.09 -1.72 13.25 37.02 0.49 -1.23 16 12 N -0.13 -1.71 4.40 -206.72 -0.91 -2.62 16 13 C 0.08 0.05 11.63 127.77 1.49 1.53 16 14 N -0.31 -4.83 12.13 -51.20 -0.62 -5.45 16 15 C 0.10 2.14 6.38 86.85 0.55 2.70 16 16 N -0.61 -17.38 3.07 -787.96 -2.42 -19.79 16 17 C 0.55 21.83 7.66 87.66 0.67 22.50 16 18 O -0.56 -27.13 14.90 -3.02 -0.04 -27.17 16 19 C -0.12 -5.17 5.16 71.24 0.37 -4.80 16 20 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 21 C -0.55 -32.02 9.50 67.95 0.65 -31.38 16 22 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.77 5.49 84.86 0.47 1.24 16 24 N -0.91 -56.88 13.22 21.65 0.29 -56.60 16 25 Si 1.00 44.65 29.55 68.60 2.03 46.67 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 28 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.09 6.88 -2.38 -0.02 1.07 16 32 H 0.10 1.12 7.85 -2.39 -0.02 1.10 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.36 3.54 8.48 -89.69 -0.76 2.78 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 0.78 8.09 -2.39 -0.02 0.76 16 37 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.08 1.65 7.48 -2.39 -0.02 1.63 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.11 4.07 7.85 -2.39 -0.02 4.06 16 43 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 44 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -86.98 385.05 1.13 -85.86 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.26 Total: 10.67 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 6.97 Total: -1.40 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -6.93 Total: -105.02 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.17 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -86.98 1.13 -85.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278344062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.856 kcal (2) G-P(sol) polarization free energy of solvation -86.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds