Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35352 * 117.00518 * 2 1 4 4 N 1.30547 * 125.44723 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38152 * 179.97438 * 4 3 2 6 6 C 1.47372 * 126.41016 * 180.02562 * 5 4 3 7 7 O 1.21620 * 119.99341 * 179.97438 * 6 5 4 8 8 N 1.34775 * 120.00318 * 359.97438 * 6 5 4 9 9 C 1.46494 * 120.00284 * 180.02562 * 8 6 5 10 10 C 1.52990 * 109.47488 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47500 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47178 * 305.00443 * 11 10 9 13 13 C 1.53004 * 109.47606 * 185.00124 * 11 10 9 14 14 N 1.46901 * 109.47335 * 64.99979 * 11 10 9 15 15 C 1.46894 * 111.00627 * 205.00264 * 14 11 10 16 16 C 1.50691 * 109.47432 * 179.97438 * 15 14 11 17 17 O 1.21292 * 119.99968 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00287 * 179.97438 * 16 15 14 19 19 C 1.37089 * 120.00038 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00536 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99959 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00639 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99806 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47089 * 90.00385 * 23 21 19 25 25 H 1.48510 * 109.46976 * 210.00036 * 23 21 19 26 26 H 1.48492 * 109.47327 * 329.99945 * 23 21 19 27 27 C 1.35914 * 107.17453 * 0.02562 * 5 4 3 28 28 O 1.34201 * 125.44503 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46893 * 299.99904 * 1 2 3 31 31 H 1.08999 * 109.46935 * 59.99831 * 1 2 3 32 32 H 0.97005 * 119.99897 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46744 * 300.00252 * 9 8 6 34 34 H 1.09001 * 109.47129 * 59.99227 * 9 8 6 35 35 H 1.09001 * 109.47515 * 300.00001 * 10 9 8 36 36 H 1.09010 * 109.47229 * 59.99884 * 10 9 8 37 37 H 1.09000 * 109.47112 * 300.00359 * 13 11 10 38 38 H 1.09004 * 109.46551 * 60.00042 * 13 11 10 39 39 H 1.09001 * 109.47396 * 179.97438 * 13 11 10 40 40 H 1.00898 * 110.99662 * 328.96062 * 14 11 10 41 41 H 1.09002 * 109.47090 * 300.00324 * 15 14 11 42 42 H 1.08997 * 109.47045 * 59.99566 * 15 14 11 43 43 H 0.97005 * 119.99364 * 359.97438 * 18 16 15 44 44 H 0.96990 * 120.00589 * 179.97438 * 22 21 19 45 45 H 1.07995 * 126.45649 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 7 3.3349 1.3976 0.0005 5 6 3.5702 2.7405 -0.0003 6 6 4.8894 3.3974 -0.0006 7 8 4.9642 4.6113 -0.0018 8 7 6.0130 2.6530 0.0003 9 6 7.3243 3.3060 0.0006 10 6 8.4238 2.2422 0.0024 11 6 9.7934 2.9241 0.0020 12 1 9.8562 3.6127 -0.8407 13 6 10.8906 1.8650 -0.1220 14 7 9.9704 3.6680 1.2563 15 6 10.9269 4.7696 1.0846 16 6 11.0817 5.5083 2.3889 17 8 10.4571 5.1519 3.3656 18 7 11.9150 6.5645 2.4705 19 6 12.0562 7.2361 3.6572 20 1 11.4995 6.9193 4.5267 21 6 12.9150 8.3253 3.7412 22 7 13.0500 8.9695 4.8786 23 14 13.8775 8.8739 2.2372 24 1 13.0836 9.8740 1.4791 25 1 15.1617 9.4838 2.6666 26 1 14.1525 7.7001 1.3702 27 6 2.3605 3.3599 -0.0007 28 8 1.4229 2.3958 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 5.9533 1.6848 0.0016 33 1 7.4209 3.9274 -0.8897 34 1 7.4201 3.9285 0.8902 35 1 8.3271 1.6211 0.8929 36 1 8.3283 1.6193 -0.8871 37 1 10.8278 1.1765 0.7206 38 1 10.7593 1.3131 -1.0528 39 1 11.8663 2.3510 -0.1227 40 1 9.0859 4.0078 1.6030 41 1 11.8924 4.3679 0.7773 42 1 10.5588 5.4547 0.3210 43 1 12.4154 6.8489 1.6896 44 1 13.6497 9.7296 4.9373 45 1 2.1851 4.4255 -0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281739752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = -72.803448 kcal Electronic energy + Delta-G solvation = -28235.427811 eV Core-core repulsion = 23869.935120 eV Total energy + Delta-G solvation = -4365.492691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.92100 -39.88802 -39.27892 -38.59464 -37.25098 -35.41393 -34.85607 -33.89732 -31.75391 -31.42097 -30.62476 -29.07413 -28.00850 -26.58151 -25.08750 -23.78046 -23.13202 -22.51723 -21.11051 -20.42429 -19.44619 -19.26191 -18.31081 -18.01137 -17.64500 -16.87795 -16.49067 -16.11030 -15.92518 -15.77829 -15.60676 -15.31068 -15.02075 -14.67032 -14.30504 -13.96242 -13.82835 -13.61968 -13.33284 -13.06554 -12.89337 -12.61622 -12.52473 -12.24442 -12.13877 -11.93758 -11.73081 -11.51447 -11.33314 -11.32335 -11.24745 -11.14587 -10.84572 -10.55485 -10.44359 -9.93000 -9.52500 -9.37820 -9.11289 -8.52095 -8.15258 -8.09326 -6.26490 -3.77651 0.67428 1.41746 1.59539 2.23245 2.81444 2.98738 3.06497 3.10529 3.18424 3.79831 4.01550 4.11857 4.15542 4.27431 4.39070 4.43339 4.58688 4.64722 4.80637 4.85339 4.87137 4.98104 5.03577 5.25875 5.28402 5.34580 5.39660 5.52300 5.65398 5.74057 5.81497 5.85423 5.92836 5.99004 6.04283 6.09780 6.15550 6.32209 6.95178 7.16977 7.28296 7.62152 7.63955 7.88250 8.19642 8.64866 8.99985 9.47469 9.88259 10.86744 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.001780 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.713001 B =15725.948693 C =16599.810490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.244 6.244 3 C 0.382 3.618 4 N -0.456 5.456 5 C -0.048 4.048 6 C 0.602 3.398 7 O -0.529 6.529 8 N -0.708 5.708 9 C 0.112 3.888 10 C -0.133 4.133 11 C 0.087 3.913 12 H 0.045 0.955 13 C -0.139 4.139 14 N -0.666 5.666 15 C 0.047 3.953 16 C 0.450 3.550 17 O -0.564 6.564 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.007 3.993 28 O -0.225 6.225 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.351 0.649 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.534 -17.771 -17.343 33.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.152 6.152 3 C 0.135 3.865 4 N -0.202 5.202 5 C -0.167 4.167 6 C 0.386 3.614 7 O -0.405 6.405 8 N -0.359 5.359 9 C -0.012 4.012 10 C -0.172 4.172 11 C -0.024 4.024 12 H 0.063 0.937 13 C -0.197 4.197 14 N -0.301 5.301 15 C -0.086 4.086 16 C 0.236 3.764 17 O -0.446 6.446 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.065 4.065 28 O -0.116 6.116 29 H 0.138 0.862 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.172 0.828 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.203 0.797 44 H 0.083 0.917 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -21.891 -18.127 -16.291 32.759 hybrid contribution -0.438 1.313 -1.573 2.095 sum -22.329 -16.814 -17.863 33.172 Atomic orbital electron populations 1.23332 0.74919 1.05802 1.03112 1.86391 1.23803 1.15790 1.89200 1.23360 0.85607 0.79597 0.97904 1.71083 1.09831 1.15621 1.23674 1.21665 0.95863 0.88382 1.10750 1.16630 0.81959 0.85962 0.76799 1.90886 1.86641 1.12635 1.50370 1.45745 1.05289 1.10949 1.73906 1.21564 0.80677 0.95907 1.03015 1.21989 0.93132 0.98180 1.03852 1.21456 0.93822 0.95627 0.91464 0.93675 1.21789 0.98239 0.98441 1.01264 1.60187 1.15840 1.26889 1.27214 1.21758 0.98012 0.92467 0.96329 1.19729 0.83965 0.82813 0.89882 1.90566 1.48512 1.67413 1.38068 1.42205 1.40230 1.28511 1.12155 1.19436 1.24858 1.09542 0.89435 0.86294 1.25034 0.97612 0.96505 0.97033 1.69619 1.37534 1.20709 1.24388 0.86670 0.80586 0.79338 0.82787 1.19677 1.20213 1.19477 1.25026 0.84862 0.93885 1.02747 1.84401 1.39525 1.15864 1.71786 0.86172 0.91265 0.91341 0.75354 0.91092 0.90542 0.89782 0.90417 0.91723 0.92811 0.92477 0.82756 0.89454 0.93699 0.79712 0.91666 0.74596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 10.73 101.05 1.08 1.14 16 2 O -0.24 -1.76 10.55 -40.98 -0.43 -2.19 16 3 C 0.38 3.45 8.98 52.22 0.47 3.92 16 4 N -0.46 -4.92 11.10 -11.71 -0.13 -5.05 16 5 C -0.05 -0.51 6.99 -82.98 -0.58 -1.09 16 6 C 0.60 7.45 7.81 -12.54 -0.10 7.35 16 7 O -0.53 -8.09 16.89 5.26 0.09 -8.00 16 8 N -0.71 -7.53 5.55 -61.41 -0.34 -7.87 16 9 C 0.11 1.22 5.50 -4.05 -0.02 1.19 16 10 C -0.13 -1.25 4.92 -26.74 -0.13 -1.38 16 11 C 0.09 0.98 2.65 -67.71 -0.18 0.80 16 12 H 0.05 0.48 7.80 -51.93 -0.40 0.08 16 13 C -0.14 -1.45 9.42 37.16 0.35 -1.10 16 14 N -0.67 -10.33 5.93 -108.00 -0.64 -10.97 16 15 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 16 C 0.45 10.48 7.82 -10.99 -0.09 10.40 16 17 O -0.56 -15.52 15.78 5.55 0.09 -15.43 16 18 N -0.59 -14.42 5.09 -10.97 -0.06 -14.47 16 19 C -0.30 -8.78 10.16 -14.94 -0.15 -8.93 16 20 H 0.12 3.92 7.39 -52.49 -0.39 3.54 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -26.20 13.96 55.50 0.77 -25.42 16 23 Si 0.88 19.72 27.74 -169.99 -4.71 15.01 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -5.50 6.52 56.52 0.37 -5.14 16 27 C 0.01 0.06 11.93 29.90 0.36 0.42 16 28 O -0.22 -1.76 10.20 -17.74 -0.18 -1.95 16 29 H 0.12 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.41 3.73 8.20 -40.82 -0.33 3.40 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.00 6.43 -51.93 -0.33 0.67 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 40 H 0.35 5.77 6.17 -39.29 -0.24 5.52 16 41 H 0.09 1.33 7.44 -51.93 -0.39 0.94 16 42 H 0.05 0.67 8.05 -51.93 -0.42 0.25 16 43 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.24 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -37.03 388.08 -4.91 -41.95 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -6.10 Total: 14.01 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 0.89 Total: 14.53 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.39 Total: -63.78 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.44 Total: -27.56 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.03 -4.91 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281739752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.855 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds